MCL coexpression mm9:32: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 3: | Line 3: | ||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137398724818722,0,0,0,0,0.843105151457473,0,0,0.0680912293502604,0.167134271056746,0.346878773447846,0.581814217257228,0.783131931091108,0.618330859289471,0.697784014453803,0.669080574888846,0.914342408476174,0.868605904306367,0.952099450836469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0871588832444397,0.081359932135904,0,0.0595943511903615,0.098117166361508,0.0750453505157095,0.0745542549075041,0.0763037466917402,0.0690411384905589,0,0.0540274765852335,0.0766073954291401,0,0.0596387295197733,0.0757246162613553,0.0709519923534245,0.092873634605593,0.0589368614163519,0.0748964051866952,0.0678996586311492,0.0729583017401753,0.101427320830301,0.0553034373508932,0,0.0486884105045233,0.0780974029773103,0,0.0625582350728301,0.0766064454112358,0,0.091291089277545,0.0845301845292944,0,0,0 | |coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137398724818722,0,0,0,0,0.843105151457473,0,0,0.0680912293502604,0.167134271056746,0.346878773447846,0.581814217257228,0.783131931091108,0.618330859289471,0.697784014453803,0.669080574888846,0.914342408476174,0.868605904306367,0.952099450836469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0871588832444397,0.081359932135904,0,0.0595943511903615,0.098117166361508,0.0750453505157095,0.0745542549075041,0.0763037466917402,0.0690411384905589,0,0.0540274765852335,0.0766073954291401,0,0.0596387295197733,0.0757246162613553,0.0709519923534245,0.092873634605593,0.0589368614163519,0.0748964051866952,0.0678996586311492,0.0729583017401753,0.101427320830301,0.0553034373508932,0,0.0486884105045233,0.0780974029773103,0,0.0625582350728301,0.0766064454112358,0,0.091291089277545,0.0845301845292944,0,0,0 | ||
|gostat_on_MCL_coexpression=GO:0050828;regulation of liquid surface tension;3.46568580688957e-07;20387,20389,20388,20390!GO:0007585;respiratory gaseous exchange;8.29781631282212e-06;15531,20387,20389,20388,20390!GO:0009653;anatomical structure morphogenesis;0.00382825939187166;15531,224796,21869,18541,12168,20671,11482,104394,20348,27428,71461,12389,21687,19303,208449!GO:0005886;plasma membrane;0.00382825939187166;12289,380928,22068,12389,20272,14747,27410,218194,12741,19263,21872,27428,16182,71461,13385,19303,65962,208449,56788,56492!GO:0005912;adherens junction;0.0241979413251207;21872,27428,19303,380928!GO:0022836;gated channel activity;0.0241979413251207;224796,12289,20276,20272,69454,22068,20278!GO:0005272;sodium channel activity;0.0241979413251207;20276,20272,20278!GO:0051179;localization;0.0241979413251207;224796,12289,21869,11596,69035,69454,74121,22068,20348,12389,21687,20276,20272,20390,27410,20387,19073,234678,109323,20309,20278,13385,19303,66610!GO:0006811;ion transport;0.0241979413251207;20387,224796,12289,69454,22068,20278,109323,12389,20276,20272,20390!GO:0044459;plasma membrane part;0.0241979413251207;218194,12289,12741,380928,22068,21872,27428,12389,16182,19303,13385,65962,20272,56788,14747,56492!GO:0019199;transmembrane receptor protein kinase activity;0.0241979413251207;71461,21687,12168,11482!GO:0030054;cell junction;0.0241979413251207;218194,12741,380928,27428,21872,13385,19303,56492!GO:0048856;anatomical structure development;0.0241979413251207;224796,21869,18541,20671,104394,20348,12389,21687,54598,15531,19073,12168,11482,20309,71461,27428,19303,208449!GO:0015280;amiloride-sensitive sodium channel activity;0.0241979413251207;20276,20278!GO:0009887;organ morphogenesis;0.0241979413251207;15531,224796,21869,20671,11482,104394,20348,12389,21687!GO:0015698;inorganic anion transport;0.0241979413251207;20387,224796,69454,20390,109323!GO:0044421;extracellular region part;0.0278784978857889;11596,20348,68662,21687,16782,54598,20390,11421,20387,12741,19073,20389,20388,109323,20309,16182,76477,117158,56788,56492!GO:0030855;epithelial cell differentiation;0.0279067754608613;27428,71461,12389!GO:0005911;intercellular junction;0.0279067754608613;21872,27428,12741,380928,56492!GO:0042592;homeostatic process;0.0287912357053508;12389,20387,20389,20388,104394,22068,20390!GO:0043296;apical junction complex;0.0287912357053508;21872,27428,12741,56492!GO:0016327;apicolateral plasma membrane;0.0294594967756831;21872,27428,12741,56492!GO:0007275;multicellular organismal development;0.0294594967756831;224796,21869,20671,104394,20348,12389,21687,54598,15531,218877,19073,12168,11482,20309,27428,71461,19303,70248,330890!GO:0006820;anion transport;0.0343162665327835;20387,224796,69454,20390,109323!GO:0005216;ion channel activity;0.0343162665327835;224796,12289,20276,20272,69454,22068,20278!GO:0004675;transmembrane receptor protein serine/threonine kinase activity;0.0349062400725646;12168,11482!GO:0005024;transforming growth factor beta receptor activity;0.0349062400725646;12168,11482!GO:0048514;blood vessel morphogenesis;0.0349062400725646;12389,21687,20671,11482,20348!GO:0022838;substrate specific channel activity;0.0349062400725646;224796,12289,20276,20272,69454,22068,20278!GO:0016504;protease activator activity;0.0368210725504567;12389,66824!GO:0016050;vesicle organization and biogenesis;0.0368210725504567;13385,19073!GO:0016324;apical plasma membrane;0.0384013414820771;27428,65962,380928!GO:0048513;organ development;0.0384013414820771;15531,224796,21869,19073,12168,20671,11482,104394,20348,20309,12389,21687,54598!GO:0022803;passive transmembrane transporter activity;0.0384013414820771;224796,12289,20276,20272,69454,22068,20278!GO:0015267;channel activity;0.0384013414820771;224796,12289,20276,20272,69454,22068,20278!GO:0044425;membrane part;0.0384013414820771;224405,11596,12389,54199,21687,20276,84682,14747,27410,218194,15531,12168,21872,71461,65962,109246,208449,12289,380928,69035,22068,14261,20272,54598,75689,11421,243653,12741,234678,11482,20389,20278,27428,16182,239739,68801,13385,19303,67888,56788,84094,56492!GO:0065008;regulation of biological quality;0.0414775361990715;20387,20389,20388,104394,22068,12389,13385,208449,20390!GO:0048731;system development;0.0414775361990715;224796,21869,20671,104394,20348,12389,21687,54598,15531,12168,19073,11482,20309,71461,27428!GO:0031404;chloride ion binding;0.0414775361990715;224796,69454,11421!GO:0043168;anion binding;0.0414775361990715;224796,69454,11421!GO:0005247;voltage-gated chloride channel activity;0.0426634215258619;224796,69454!GO:0022844;voltage-gated anion channel activity;0.0426634215258619;224796,69454!GO:0032501;multicellular organismal process;0.0426634215258619;224796,12289,21869,20671,104394,20348,12389,21687,20276,109828,54598,20390,15531,20387,218877,19073,12168,20389,11482,59069,20388,20278,20309,27428,71461,13385,19303,70248,330890!GO:0035295;tube development;0.0442416081393667;27428,71461,12389,19303,21869!GO:0001568;blood vessel development;0.0451572172564159;12389,21687,20671,11482,20348!GO:0005615;extracellular space;0.0460707192408398;11596,20348,68662,21687,16782,54598,20390,11421,20387,12741,19073,109323,20309,16182,76477,117158,56788,56492!GO:0001944;vasculature development;0.0460707192408398;12389,21687,20671,11482,20348!GO:0016337;cell-cell adhesion;0.0470337026782448;27428,71461,21687,12741,380928!GO:0016020;membrane;0.0477729688270422;224796,224405,11596,69454,12389,54199,21687,20276,84682,74071,14747,27410,218194,15531,12168,21872,71461,65962,109246,208449,12289,380928,69035,22068,14261,20272,54598,75689,11421,243653,12741,19263,234678,20389,11482,20278,27428,16182,239739,19303,13385,68801,67888,56788,84094,56492!GO:0032502;developmental process;0.0477729688270422;224796,21869,18541,20671,104394,20348,12389,21687,54598,15531,218877,19073,12168,11482,66824,20309,27428,71461,19303,208449,70248,330890!GO:0006817;phosphate transport;0.0477729688270422;20387,20390,109323!GO:0006928;cell motility;0.0477729688270422;21687,19303,21869,20348,20309,66610!GO:0051674;localization of cell;0.0477729688270422;21687,19303,21869,20348,20309,66610!GO:0005923;tight junction;0.0477729688270422;21872,12741,56492!GO:0051260;protein homooligomerization;0.0477729688270422;12389,109323!GO:0008092;cytoskeletal protein binding;0.0477729688270422;27428,218194,77569,17912,380928,59069!GO:0052547;regulation of peptidase activity;0.0477729688270422;12389!GO:0030857;negative regulation of epithelial cell differentiation;0.0477729688270422;12389!GO:0033371;T cell secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0477729688270422;19073!GO:0030215;semaphorin receptor binding;0.0477729688270422;20348!GO:0033365;protein localization in organelle;0.0477729688270422;19073!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0477729688270422;19073!GO:0033367;protein localization in mast cell secretory granule;0.0477729688270422;19073!GO:0042629;mast cell granule;0.0477729688270422;19073!GO:0033363;secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033366;protein localization in secretory granule;0.0477729688270422;19073!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0477729688270422;19073!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0477729688270422;19073!GO:0048702;embryonic neurocranium morphogenesis;0.0477729688270422;15531!GO:0042599;lamellar body;0.0477729688270422;27410!GO:0033380;granzyme B localization in T cell secretory granule;0.0477729688270422;19073!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0477729688270422;19073!GO:0033483;gas homeostasis;0.0477729688270422;12389!GO:0000138;Golgi trans cisterna;0.0477729688270422;208449!GO:0031234;extrinsic to internal side of plasma membrane;0.0477729688270422;13385!GO:0045908;negative regulation of vasodilation;0.0477729688270422;12389!GO:0033484;nitric oxide homeostasis;0.0477729688270422;12389!GO:0033364;mast cell secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033368;protease localization in mast cell secretory granule;0.0477729688270422;19073!GO:0042312;regulation of vasodilation;0.0477729688270422;12389!GO:0033374;protein localization in T cell secretory granule;0.0477729688270422;19073!GO:0033375;protease localization in T cell secretory granule;0.0477729688270422;19073!GO:0035239;tube morphogenesis;0.0482263274263998;27428,71461,12389,19303!GO:0005261;cation channel activity;0.0488979114826303;12289,20276,20272,22068,20278!GO:0003779;actin binding;0.0488979114826303;27428,218194,77569,17912,59069!GO:0000902;cell morphogenesis;0.0488979114826303;27428,71461,19303,224796,18541,208449,104394!GO:0032989;cellular structure morphogenesis;0.0488979114826303;27428,71461,19303,224796,18541,208449,104394! | |gostat_on_MCL_coexpression=GO:0050828;regulation of liquid surface tension;3.46568580688957e-07;20387,20389,20388,20390!GO:0007585;respiratory gaseous exchange;8.29781631282212e-06;15531,20387,20389,20388,20390!GO:0009653;anatomical structure morphogenesis;0.00382825939187166;15531,224796,21869,18541,12168,20671,11482,104394,20348,27428,71461,12389,21687,19303,208449!GO:0005886;plasma membrane;0.00382825939187166;12289,380928,22068,12389,20272,14747,27410,218194,12741,19263,21872,27428,16182,71461,13385,19303,65962,208449,56788,56492!GO:0005912;adherens junction;0.0241979413251207;21872,27428,19303,380928!GO:0022836;gated channel activity;0.0241979413251207;224796,12289,20276,20272,69454,22068,20278!GO:0005272;sodium channel activity;0.0241979413251207;20276,20272,20278!GO:0051179;localization;0.0241979413251207;224796,12289,21869,11596,69035,69454,74121,22068,20348,12389,21687,20276,20272,20390,27410,20387,19073,234678,109323,20309,20278,13385,19303,66610!GO:0006811;ion transport;0.0241979413251207;20387,224796,12289,69454,22068,20278,109323,12389,20276,20272,20390!GO:0044459;plasma membrane part;0.0241979413251207;218194,12289,12741,380928,22068,21872,27428,12389,16182,19303,13385,65962,20272,56788,14747,56492!GO:0019199;transmembrane receptor protein kinase activity;0.0241979413251207;71461,21687,12168,11482!GO:0030054;cell junction;0.0241979413251207;218194,12741,380928,27428,21872,13385,19303,56492!GO:0048856;anatomical structure development;0.0241979413251207;224796,21869,18541,20671,104394,20348,12389,21687,54598,15531,19073,12168,11482,20309,71461,27428,19303,208449!GO:0015280;amiloride-sensitive sodium channel activity;0.0241979413251207;20276,20278!GO:0009887;organ morphogenesis;0.0241979413251207;15531,224796,21869,20671,11482,104394,20348,12389,21687!GO:0015698;inorganic anion transport;0.0241979413251207;20387,224796,69454,20390,109323!GO:0044421;extracellular region part;0.0278784978857889;11596,20348,68662,21687,16782,54598,20390,11421,20387,12741,19073,20389,20388,109323,20309,16182,76477,117158,56788,56492!GO:0030855;epithelial cell differentiation;0.0279067754608613;27428,71461,12389!GO:0005911;intercellular junction;0.0279067754608613;21872,27428,12741,380928,56492!GO:0042592;homeostatic process;0.0287912357053508;12389,20387,20389,20388,104394,22068,20390!GO:0043296;apical junction complex;0.0287912357053508;21872,27428,12741,56492!GO:0016327;apicolateral plasma membrane;0.0294594967756831;21872,27428,12741,56492!GO:0007275;multicellular organismal development;0.0294594967756831;224796,21869,20671,104394,20348,12389,21687,54598,15531,218877,19073,12168,11482,20309,27428,71461,19303,70248,330890!GO:0006820;anion transport;0.0343162665327835;20387,224796,69454,20390,109323!GO:0005216;ion channel activity;0.0343162665327835;224796,12289,20276,20272,69454,22068,20278!GO:0004675;transmembrane receptor protein serine/threonine kinase activity;0.0349062400725646;12168,11482!GO:0005024;transforming growth factor beta receptor activity;0.0349062400725646;12168,11482!GO:0048514;blood vessel morphogenesis;0.0349062400725646;12389,21687,20671,11482,20348!GO:0022838;substrate specific channel activity;0.0349062400725646;224796,12289,20276,20272,69454,22068,20278!GO:0016504;protease activator activity;0.0368210725504567;12389,66824!GO:0016050;vesicle organization and biogenesis;0.0368210725504567;13385,19073!GO:0016324;apical plasma membrane;0.0384013414820771;27428,65962,380928!GO:0048513;organ development;0.0384013414820771;15531,224796,21869,19073,12168,20671,11482,104394,20348,20309,12389,21687,54598!GO:0022803;passive transmembrane transporter activity;0.0384013414820771;224796,12289,20276,20272,69454,22068,20278!GO:0015267;channel activity;0.0384013414820771;224796,12289,20276,20272,69454,22068,20278!GO:0044425;membrane part;0.0384013414820771;224405,11596,12389,54199,21687,20276,84682,14747,27410,218194,15531,12168,21872,71461,65962,109246,208449,12289,380928,69035,22068,14261,20272,54598,75689,11421,243653,12741,234678,11482,20389,20278,27428,16182,239739,68801,13385,19303,67888,56788,84094,56492!GO:0065008;regulation of biological quality;0.0414775361990715;20387,20389,20388,104394,22068,12389,13385,208449,20390!GO:0048731;system development;0.0414775361990715;224796,21869,20671,104394,20348,12389,21687,54598,15531,12168,19073,11482,20309,71461,27428!GO:0031404;chloride ion binding;0.0414775361990715;224796,69454,11421!GO:0043168;anion binding;0.0414775361990715;224796,69454,11421!GO:0005247;voltage-gated chloride channel activity;0.0426634215258619;224796,69454!GO:0022844;voltage-gated anion channel activity;0.0426634215258619;224796,69454!GO:0032501;multicellular organismal process;0.0426634215258619;224796,12289,21869,20671,104394,20348,12389,21687,20276,109828,54598,20390,15531,20387,218877,19073,12168,20389,11482,59069,20388,20278,20309,27428,71461,13385,19303,70248,330890!GO:0035295;tube development;0.0442416081393667;27428,71461,12389,19303,21869!GO:0001568;blood vessel development;0.0451572172564159;12389,21687,20671,11482,20348!GO:0005615;extracellular space;0.0460707192408398;11596,20348,68662,21687,16782,54598,20390,11421,20387,12741,19073,109323,20309,16182,76477,117158,56788,56492!GO:0001944;vasculature development;0.0460707192408398;12389,21687,20671,11482,20348!GO:0016337;cell-cell adhesion;0.0470337026782448;27428,71461,21687,12741,380928!GO:0016020;membrane;0.0477729688270422;224796,224405,11596,69454,12389,54199,21687,20276,84682,74071,14747,27410,218194,15531,12168,21872,71461,65962,109246,208449,12289,380928,69035,22068,14261,20272,54598,75689,11421,243653,12741,19263,234678,20389,11482,20278,27428,16182,239739,19303,13385,68801,67888,56788,84094,56492!GO:0032502;developmental process;0.0477729688270422;224796,21869,18541,20671,104394,20348,12389,21687,54598,15531,218877,19073,12168,11482,66824,20309,27428,71461,19303,208449,70248,330890!GO:0006817;phosphate transport;0.0477729688270422;20387,20390,109323!GO:0006928;cell motility;0.0477729688270422;21687,19303,21869,20348,20309,66610!GO:0051674;localization of cell;0.0477729688270422;21687,19303,21869,20348,20309,66610!GO:0005923;tight junction;0.0477729688270422;21872,12741,56492!GO:0051260;protein homooligomerization;0.0477729688270422;12389,109323!GO:0008092;cytoskeletal protein binding;0.0477729688270422;27428,218194,77569,17912,380928,59069!GO:0052547;regulation of peptidase activity;0.0477729688270422;12389!GO:0030857;negative regulation of epithelial cell differentiation;0.0477729688270422;12389!GO:0033371;T cell secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0477729688270422;19073!GO:0030215;semaphorin receptor binding;0.0477729688270422;20348!GO:0033365;protein localization in organelle;0.0477729688270422;19073!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0477729688270422;19073!GO:0033367;protein localization in mast cell secretory granule;0.0477729688270422;19073!GO:0042629;mast cell granule;0.0477729688270422;19073!GO:0033363;secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033366;protein localization in secretory granule;0.0477729688270422;19073!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0477729688270422;19073!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0477729688270422;19073!GO:0048702;embryonic neurocranium morphogenesis;0.0477729688270422;15531!GO:0042599;lamellar body;0.0477729688270422;27410!GO:0033380;granzyme B localization in T cell secretory granule;0.0477729688270422;19073!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0477729688270422;19073!GO:0033483;gas homeostasis;0.0477729688270422;12389!GO:0000138;Golgi trans cisterna;0.0477729688270422;208449!GO:0031234;extrinsic to internal side of plasma membrane;0.0477729688270422;13385!GO:0045908;negative regulation of vasodilation;0.0477729688270422;12389!GO:0033484;nitric oxide homeostasis;0.0477729688270422;12389!GO:0033364;mast cell secretory granule organization and biogenesis;0.0477729688270422;19073!GO:0033368;protease localization in mast cell secretory granule;0.0477729688270422;19073!GO:0042312;regulation of vasodilation;0.0477729688270422;12389!GO:0033374;protein localization in T cell secretory granule;0.0477729688270422;19073!GO:0033375;protease localization in T cell secretory granule;0.0477729688270422;19073!GO:0035239;tube morphogenesis;0.0482263274263998;27428,71461,12389,19303!GO:0005261;cation channel activity;0.0488979114826303;12289,20276,20272,22068,20278!GO:0003779;actin binding;0.0488979114826303;27428,218194,77569,17912,59069!GO:0000902;cell morphogenesis;0.0488979114826303;27428,71461,19303,224796,18541,208449,104394!GO:0032989;cellular structure morphogenesis;0.0488979114826303;27428,71461,19303,224796,18541,208449,104394! | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002048!2.54e-23!14;UBERON:0000117!2.54e-23!14;UBERON:0000171!2.54e-23!14;UBERON:0000170!2.54e-23!14;UBERON:0005597!2.54e-23!14;UBERON:0000118!2.54e-23!14;UBERON:0005153!1.12e-18!17;UBERON:0005178!1.12e-18!17;UBERON:0005181!1.12e-18!17;UBERON:0002224!1.12e-18!17;UBERON:0000915!1.12e-18!17;UBERON:0008947!1.12e-18!17;UBERON:0003258!1.12e-18!17;UBERON:0005157!1.99e-15!20 | |||
}} | }} |
Revision as of 19:41, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0050828 | regulation of liquid surface tension | 3.46568580688957e-07 |
GO:0007585 | respiratory gaseous exchange | 8.29781631282212e-06 |
GO:0009653 | anatomical structure morphogenesis | 0.00382825939187166 |
GO:0005886 | plasma membrane | 0.00382825939187166 |
GO:0005912 | adherens junction | 0.0241979413251207 |
GO:0022836 | gated channel activity | 0.0241979413251207 |
GO:0005272 | sodium channel activity | 0.0241979413251207 |
GO:0051179 | localization | 0.0241979413251207 |
GO:0006811 | ion transport | 0.0241979413251207 |
GO:0044459 | plasma membrane part | 0.0241979413251207 |
GO:0019199 | transmembrane receptor protein kinase activity | 0.0241979413251207 |
GO:0030054 | cell junction | 0.0241979413251207 |
GO:0048856 | anatomical structure development | 0.0241979413251207 |
GO:0015280 | amiloride-sensitive sodium channel activity | 0.0241979413251207 |
GO:0009887 | organ morphogenesis | 0.0241979413251207 |
GO:0015698 | inorganic anion transport | 0.0241979413251207 |
GO:0044421 | extracellular region part | 0.0278784978857889 |
GO:0030855 | epithelial cell differentiation | 0.0279067754608613 |
GO:0005911 | intercellular junction | 0.0279067754608613 |
GO:0042592 | homeostatic process | 0.0287912357053508 |
GO:0043296 | apical junction complex | 0.0287912357053508 |
GO:0016327 | apicolateral plasma membrane | 0.0294594967756831 |
GO:0007275 | multicellular organismal development | 0.0294594967756831 |
GO:0006820 | anion transport | 0.0343162665327835 |
GO:0005216 | ion channel activity | 0.0343162665327835 |
GO:0004675 | transmembrane receptor protein serine/threonine kinase activity | 0.0349062400725646 |
GO:0005024 | transforming growth factor beta receptor activity | 0.0349062400725646 |
GO:0048514 | blood vessel morphogenesis | 0.0349062400725646 |
GO:0022838 | substrate specific channel activity | 0.0349062400725646 |
GO:0016504 | protease activator activity | 0.0368210725504567 |
GO:0016050 | vesicle organization and biogenesis | 0.0368210725504567 |
GO:0016324 | apical plasma membrane | 0.0384013414820771 |
GO:0048513 | organ development | 0.0384013414820771 |
GO:0022803 | passive transmembrane transporter activity | 0.0384013414820771 |
GO:0015267 | channel activity | 0.0384013414820771 |
GO:0044425 | membrane part | 0.0384013414820771 |
GO:0065008 | regulation of biological quality | 0.0414775361990715 |
GO:0048731 | system development | 0.0414775361990715 |
GO:0031404 | chloride ion binding | 0.0414775361990715 |
GO:0043168 | anion binding | 0.0414775361990715 |
GO:0005247 | voltage-gated chloride channel activity | 0.0426634215258619 |
GO:0022844 | voltage-gated anion channel activity | 0.0426634215258619 |
GO:0032501 | multicellular organismal process | 0.0426634215258619 |
GO:0035295 | tube development | 0.0442416081393667 |
GO:0001568 | blood vessel development | 0.0451572172564159 |
GO:0005615 | extracellular space | 0.0460707192408398 |
GO:0001944 | vasculature development | 0.0460707192408398 |
GO:0016337 | cell-cell adhesion | 0.0470337026782448 |
GO:0016020 | membrane | 0.0477729688270422 |
GO:0032502 | developmental process | 0.0477729688270422 |
GO:0006817 | phosphate transport | 0.0477729688270422 |
GO:0006928 | cell motility | 0.0477729688270422 |
GO:0051674 | localization of cell | 0.0477729688270422 |
GO:0005923 | tight junction | 0.0477729688270422 |
GO:0051260 | protein homooligomerization | 0.0477729688270422 |
GO:0008092 | cytoskeletal protein binding | 0.0477729688270422 |
GO:0052547 | regulation of peptidase activity | 0.0477729688270422 |
GO:0030857 | negative regulation of epithelial cell differentiation | 0.0477729688270422 |
GO:0033371 | T cell secretory granule organization and biogenesis | 0.0477729688270422 |
GO:0033377 | maintenance of protein localization in T cell secretory granule | 0.0477729688270422 |
GO:0030215 | semaphorin receptor binding | 0.0477729688270422 |
GO:0033365 | protein localization in organelle | 0.0477729688270422 |
GO:0033370 | maintenance of protein localization in mast cell secretory granule | 0.0477729688270422 |
GO:0033367 | protein localization in mast cell secretory granule | 0.0477729688270422 |
GO:0042629 | mast cell granule | 0.0477729688270422 |
GO:0033363 | secretory granule organization and biogenesis | 0.0477729688270422 |
GO:0033366 | protein localization in secretory granule | 0.0477729688270422 |
GO:0033382 | maintenance of granzyme B localization in T cell secretory granule | 0.0477729688270422 |
GO:0033373 | maintenance of protease localization in mast cell secretory granule | 0.0477729688270422 |
GO:0048702 | embryonic neurocranium morphogenesis | 0.0477729688270422 |
GO:0042599 | lamellar body | 0.0477729688270422 |
GO:0033380 | granzyme B localization in T cell secretory granule | 0.0477729688270422 |
GO:0033379 | maintenance of protease localization in T cell secretory granule | 0.0477729688270422 |
GO:0033483 | gas homeostasis | 0.0477729688270422 |
GO:0000138 | Golgi trans cisterna | 0.0477729688270422 |
GO:0031234 | extrinsic to internal side of plasma membrane | 0.0477729688270422 |
GO:0045908 | negative regulation of vasodilation | 0.0477729688270422 |
GO:0033484 | nitric oxide homeostasis | 0.0477729688270422 |
GO:0033364 | mast cell secretory granule organization and biogenesis | 0.0477729688270422 |
GO:0033368 | protease localization in mast cell secretory granule | 0.0477729688270422 |
GO:0042312 | regulation of vasodilation | 0.0477729688270422 |
GO:0033374 | protein localization in T cell secretory granule | 0.0477729688270422 |
GO:0033375 | protease localization in T cell secretory granule | 0.0477729688270422 |
GO:0035239 | tube morphogenesis | 0.0482263274263998 |
GO:0005261 | cation channel activity | 0.0488979114826303 |
GO:0003779 | actin binding | 0.0488979114826303 |
GO:0000902 | cell morphogenesis | 0.0488979114826303 |
GO:0032989 | cellular structure morphogenesis | 0.0488979114826303 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
lung | 2.54e-23 | 14 |
respiratory tube | 2.54e-23 | 14 |
respiration organ | 2.54e-23 | 14 |
pair of lungs | 2.54e-23 | 14 |
lung primordium | 2.54e-23 | 14 |
lung bud | 2.54e-23 | 14 |
epithelial bud | 1.12e-18 | 17 |
thoracic cavity element | 1.12e-18 | 17 |
thoracic segment organ | 1.12e-18 | 17 |
thoracic cavity | 1.12e-18 | 17 |
thoracic segment of trunk | 1.12e-18 | 17 |
respiratory primordium | 1.12e-18 | 17 |
endoderm of foregut | 1.12e-18 | 17 |
epithelial fold | 1.99e-15 | 20 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |