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MCL coexpression mm9:616: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0000160!1.04e-11!31;UBERON:0000344!8.20e-09!15;UBERON:0001242!1.09e-07!13;UBERON:0000060!1.09e-07!13;UBERON:0001262!1.09e-07!13;UBERON:0004786!1.09e-07!13
|ontology_enrichment_uberon=UBERON:0000160!1.04e-11!31;UBERON:0000344!8.20e-09!15;UBERON:0001242!1.09e-07!13;UBERON:0000060!1.09e-07!13;UBERON:0001262!1.09e-07!13;UBERON:0004786!1.09e-07!13
|tfbs_overrepresentation_for_novel_motifs=0.737036,0.110566,1.27243,0.303186,0.474017,0.315748,1.02601,0.303924,0.658686,1.19227,0.357058,0.385627,0.630954,0.407615,0.504927,0,0.587245,0.150639,0.279039,0.602977,0.215242,0.725792,0.406794,0.155356,0.251585,0.432737,0.0768517,0.888376,0.558665,0.438367,0.860721,0.683831,1.43157,0.234079,0.505829,0.246271,0.438297,0.995071,0.79515,1.16642,0.466602,0.870859,0.0834993,0.170547,1.26221,0.293566,0.512146,0.34807,0.0642028,0.564214,0.570705,0.457464,0.187938,0.82076,0.837732,0.414119,0.581069,0.977003,0.0716833,1.0604,0.664611,0.46618,0.340458,0.560059,1.08652,0.598412,0.970969,1.3158,0.660133,1.17005,0.229771,0.0945081,2.4894,0.870406,1.84724,0.0619297,0.504564,0.50152,0.648171,0.624196,0.0952669,0.60374,0.464847,0.61111,0.758319,0.842691,0.0395547,0.198381,0.516731,1.47691,1.03946,1.80075,0.696137,0.16091,1.85409,0.11194,0.0892768,0.698838,0.512384,0.166936,0.438441,0.683562,0.803823,0.571268,0.57027,0.869995,1.51783,0.911463,1.84928,0.216685,0.723377,0.805555,0.219561,0.949483,1.04639,0.463309,2.71606,0.306448,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,0.689622,0.969481,0.49047,0.787341,0.296885,2.16475,0.426575,1.06766,0.092963,0.274293,0.327523,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.445509,2.768,0.822286,1.22428,0.425729,0.901933,1.16026,0.52735,0.265096,0.752802,1.02862,0.757491,0.652135,0.719007,0.561023,0.418964,1.38546,0.384198,1.0612
|tfbs_overrepresentation_for_novel_motifs=0.737036,0.110566,1.27243,0.303186,0.474017,0.315748,1.02601,0.303924,0.658686,1.19227,0.357058,0.385627,0.630954,0.407615,0.504927,0,0.587245,0.150639,0.279039,0.602977,0.215242,0.725792,0.406794,0.155356,0.251585,0.432737,0.0768517,0.888376,0.558665,0.438367,0.860721,0.683831,1.43157,0.234079,0.505829,0.246271,0.438297,0.995071,0.79515,1.16642,0.466602,0.870859,0.0834993,0.170547,1.26221,0.293566,0.512146,0.34807,0.0642028,0.564214,0.570705,0.457464,0.187938,0.82076,0.837732,0.414119,0.581069,0.977003,0.0716833,1.0604,0.664611,0.46618,0.340458,0.560059,1.08652,0.598412,0.970969,1.3158,0.660133,1.17005,0.229771,0.0945081,2.4894,0.870406,1.84724,0.0619297,0.504564,0.50152,0.648171,0.624196,0.0952669,0.60374,0.464847,0.61111,0.758319,0.842691,0.0395547,0.198381,0.516731,1.47691,1.03946,1.80075,0.696137,0.16091,1.85409,0.11194,0.0892768,0.698838,0.512384,0.166936,0.438441,0.683562,0.803823,0.571268,0.57027,0.869995,1.51783,0.911463,1.84928,0.216685,0.723377,0.805555,0.219561,0.949483,1.04639,0.463309,2.71606,0.306448,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,0.689622,0.969481,0.49047,0.787341,0.296885,2.16475,0.426575,1.06766,0.092963,0.274293,0.327523,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.157809,0.445509,2.768,0.822286,1.22428,0.425729,0.901933,1.16026,0.52735,0.265096,0.752802,1.02862,0.757491,0.652135,0.719007,0.561023,0.418964,1.38546,0.384198,1.0612
|tfbs_overrepresentation_jaspar=MA0003.1;3.0268,MA0004.1;1.48666,MA0006.1;0.496735,MA0007.1;0.290695,MA0009.1;0.709264,MA0014.1;2.06593,MA0017.1;0.546298,MA0019.1;0.535691,MA0024.1;0.667197,MA0025.1;0.936082,MA0027.1;2.34178,MA0028.1;0.992869,MA0029.1;0.64639,MA0030.1;0.65267,MA0031.1;0.618697,MA0038.1;0.432665,MA0040.1;0.721328,MA0041.1;0.239557,MA0042.1;0.228771,MA0043.1;0.802848,MA0046.1;0.743934,MA0048.1;1.4928,MA0050.1;0.337476,MA0051.1;0.440863,MA0052.1;0.729105,MA0055.1;1.58675,MA0056.1;0,MA0057.1;0.0386961,MA0058.1;2.60652,MA0059.1;1.90644,MA0060.1;0.108526,MA0061.1;0.129002,MA0063.1;0,MA0066.1;0.422624,MA0067.1;1.04514,MA0068.1;0.361347,MA0069.1;0.729433,MA0070.1;0.720077,MA0071.1;0.336739,MA0072.1;0.711905,MA0073.1;2.4416,MA0074.1;0.390075,MA0076.1;2.44945,MA0077.1;0.691048,MA0078.1;0.471303,MA0081.1;0.702944,MA0083.1;0.802078,MA0084.1;1.3693,MA0087.1;0.760279,MA0088.1;0.24301,MA0089.1;0,MA0090.1;0.27428,MA0091.1;0.315003,MA0092.1;0.274547,MA0093.1;2.2957,MA0095.1;0,MA0098.1;0,MA0100.1;1.75463,MA0101.1;0.675688,MA0103.1;1.07649,MA0105.1;0.491577,MA0106.1;0.478503,MA0107.1;0.555009,MA0108.2;0.557195,MA0109.1;0,MA0111.1;0.286331,MA0113.1;0.452439,MA0114.1;0.400482,MA0115.1;0.805567,MA0116.1;0.496352,MA0117.1;0.774259,MA0119.1;0.241106,MA0122.1;0.793507,MA0124.1;0.992825,MA0125.1;0.920215,MA0130.1;0,MA0131.1;0.531427,MA0132.1;0,MA0133.1;0,MA0135.1;0.838263,MA0136.1;0.408073,MA0139.1;1.03624,MA0140.1;0.379562,MA0141.1;0.210047,MA0142.1;0.604892,MA0143.1;0.467531,MA0144.1;0.406018,MA0145.1;0.109043,MA0146.1;1.21003,MA0147.1;0.845188,MA0148.1;0.317692,MA0149.1;0.245177,MA0062.2;1.31267,MA0035.2;0.998181,MA0039.2;2.6063,MA0138.2;0.523978,MA0002.2;0.627335,MA0137.2;1.1287,MA0104.2;1.1126,MA0047.2;0.431964,MA0112.2;0.264932,MA0065.2;0.265926,MA0150.1;0.290598,MA0151.1;0,MA0152.1;0.432062,MA0153.1;0.854464,MA0154.1;0.376318,MA0155.1;1.26717,MA0156.1;0.580656,MA0157.1;0.574484,MA0158.1;0,MA0159.1;0.876351,MA0160.1;0.320315,MA0161.1;0,MA0162.1;2.12712,MA0163.1;1.62398,MA0164.1;0.408402,MA0080.2;0.190316,MA0018.2;1.88337,MA0099.2;0.518072,MA0079.2;1.35452,MA0102.2;1.42135,MA0258.1;0.118033,MA0259.1;1.31847,MA0442.1;0
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Revision as of 12:02, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr13:46764814..46764870,+p1@C78339
Mm9::chr13:46764886..46764914,+p2@C78339
Mm9::chr15:76487335..76487364,-p1@Cyhr1
Mm9::chr16:4003721..4003735,-p2@Slx4
Mm9::chr1:95531714..95531765,-p@chr1:95531714..95531765
-
Mm9::chr3:104583966..104584046,+p1@Ppm1j
Mm9::chr3:136618238..136618248,+p@chr3:136618238..136618248
+
Mm9::chr3:58381651..58381661,-p@chr3:58381651..58381661
-
Mm9::chr4:136025670..136025730,+p1@Luzp1
Mm9::chr4:137990562..137990663,+p1@Mul1
Mm9::chr4:155221502..155221576,+p1@Dvl1
Mm9::chr9:111020710..111020721,+p2@Lrrfip2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine1.04e-1131
mucosa8.20e-0915
intestinal mucosa1.09e-0713
anatomical wall1.09e-0713
wall of intestine1.09e-0713
gastrointestinal system mucosa1.09e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.13.0268
MA0004.11.48666
MA0006.10.496735
MA0007.10.290695
MA0009.10.709264
MA0014.12.06593
MA0017.10.546298
MA0019.10.535691
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.992869
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.10.432665
MA0040.10.721328
MA0041.10.239557
MA0042.10.228771
MA0043.10.802848
MA0046.10.743934
MA0048.11.4928
MA0050.10.337476
MA0051.10.440863
MA0052.10.729105
MA0055.11.58675
MA0056.10
MA0057.10.0386961
MA0058.12.60652
MA0059.11.90644
MA0060.10.108526
MA0061.10.129002
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.10.361347
MA0069.10.729433
MA0070.10.720077
MA0071.10.336739
MA0072.10.711905
MA0073.12.4416
MA0074.10.390075
MA0076.12.44945
MA0077.10.691048
MA0078.10.471303
MA0081.10.702944
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.10.24301
MA0089.10
MA0090.10.27428
MA0091.10.315003
MA0092.10.274547
MA0093.12.2957
MA0095.10
MA0098.10
MA0100.11.75463
MA0101.10.675688
MA0103.11.07649
MA0105.10.491577
MA0106.10.478503
MA0107.10.555009
MA0108.20.557195
MA0109.10
MA0111.10.286331
MA0113.10.452439
MA0114.10.400482
MA0115.10.805567
MA0116.10.496352
MA0117.10.774259
MA0119.10.241106
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.10.531427
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.11.03624
MA0140.10.379562
MA0141.10.210047
MA0142.10.604892
MA0143.10.467531
MA0144.10.406018
MA0145.10.109043
MA0146.11.21003
MA0147.10.845188
MA0148.10.317692
MA0149.10.245177
MA0062.21.31267
MA0035.20.998181
MA0039.22.6063
MA0138.20.523978
MA0002.20.627335
MA0137.21.1287
MA0104.21.1126
MA0047.20.431964
MA0112.20.264932
MA0065.20.265926
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.376318
MA0155.11.26717
MA0156.10.580656
MA0157.10.574484
MA0158.10
MA0159.10.876351
MA0160.10.320315
MA0161.10
MA0162.12.12712
MA0163.11.62398
MA0164.10.408402
MA0080.20.190316
MA0018.21.88337
MA0099.20.518072
MA0079.21.35452
MA0102.21.42135
MA0258.10.118033
MA0259.11.31847
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:616&oldid=2574011"