NonredundantMotifs:28: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR{1,2}_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR | |motif_cluster_2013_march_motif_members= /JASPAR:MA0100.1;Myb /HOCOMOCO:OVOL1_f1~MYB_f1 /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 | ||
|name=known28 | |name=known28 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=DMAP1_NCOR | |representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0.2074314320749557 | |score=0.2074314320749557 | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known28
- db :SWISSREGULON
- Id :DMAP1_NCOR(1,2)_SMARC.p2
- name :
- score :0.2074314320749557
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
