NonredundantMotifs:47: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX{A6,A7,B6,B7}.p2~NKX6-1,2.p2 /HOMER:NANOG_mES-Nanog-ChIP-Seq /JASPAR:MA0132.1;Pdx...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX | |motif_cluster_2013_march_motif_members= /JASPAR:MA0132.1;Pdx1 /HOCOMOCO:NANOG_f1~ISL1_f1 /SWISSREGULON:NKX6-1,2.p2~HOX(A6,A7,B6,B7).p2 /HOMER:NANOG_mES-Nanog-ChIP-Seq /UNIPROBE:Hoxa3_secondary;SCI09 | ||
|name=known47 | |name=known47 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known47
- db :SWISSREGULON
- Id :NKX6-1,2.p2
- name :
- score :0.10111669751939348
- External refs:
- Internal refs:
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Sub Motif Members
