NonredundantMotifs:50: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;59.405703;0.80491;27.344188;0.541267!2;42.982944;6.277354;0;38.83577!3;83.4973509999999;0;1.945583;2.653134!4;87.3588629999999;0;0;0.737205!5;4.316322;6.338996;0.544015;76.896735!6;0;2.921714;3.278825;81.8955289999999!7;43.489619;0;43.995291;0.611158!8;1.940413;0;86.1556549999999;0 | |||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX(A4,D4).p2~MEF2(A,B,C,D).p2 /JASPAR:MA0052.1;MEF2A /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /HOCOMOCO:MEF2A_f1~MEF2C_f1~MEF2D_f1 | ||
|name=known50 | |name=known50 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known50
- db :SWISSREGULON
- Id :HOX(A4,D4).p2
- name :
- score :0.18028113807999635
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
