NonredundantMotifs:67: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;49.636582;188.331903;15.653514;65.913674!2;182.44103;5.232991;115.211513;16.650139!3;7.337097;152.958876;94.4080779999999;64.831622!4;30.046149;234.720516;9.86091;44.908098!5;44.443345;52.432663;33.42907;189.230595!6;10.977514;105.461445;155.778334;47.31838!7;9.831132;83.061223;29.277186;197.366132!8;8.936186;88.680118;81.012872;140.906497!9;17.504556;158.862486;62.177035;80.991596!10;78.182046;85.4894369999999;59.257764;96.606426!11;60.938647;79.430435;100.631992;78.5345989999999!12;47.020353;42.565187;66.578624;163.371509!13;8.992938;121.972905;12.342448;176.227382!14;12.196962;13.649225;47.03758;246.651906!15;11.148649;1.681438;261.7799;44.925686!16;7.063101;20.106863;287.945606;4.420103!17;39.772017;206.298665;22.331128;51.133863!18;157.571746;30.761384;77.413063;53.78948!19;39.591222;165.350128;69.789597;44.804726!20;14.667034;105.169377;116.310559;83.3887029999999!21;16.137777;134.425176;120.375801;48.596919!22;81.0205269999999;49.839038;66.225921;122.450187!23;12.225561;72.6054409999999;222.152379;12.552292!24;8.541623;266.343039;19.712826;24.938185!25;35.913149;251.939662;12.449359;19.233503!26;169.542509;36.967714;44.471721;68.553729!27;113.720548;12.885882;156.635014;36.294229!28;44.486897;161.960429;62.076499;51.011848!29;80.2461149999999;93.87162;28.368203;117.049735 | |||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2 /JASPAR:MA0119.1;TLX1::NFIC /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2 | ||
|name=known67 | |name=known67 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known67
- db :SWISSREGULON
- Id :NFIX.p2
- name :
- score :3.539803224280569
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
