NonredundantMotifs:112: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=4086
|motif_cluster_2013_march_motif_members= /HOCOMOCO:UBIP1_f1~SMAD1_si
|name=known112
|representative_motif_db=HOCOMOCO
|representative_...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;5.24242424242423;0.2727272727272715;3.969696969696956;2.4545454545454506!2;0.0;5.757575757575738;6.181818181818163;0.0!3;0.9696969696969663;8.787878787878762;0.0;2.181818181818174!4;1.93939393939393;8.909090909090878;1.090909090909087;0.0!5;0.9696969696969663;0.9696969696969663;0.0;9.999999999999972!6;0.9696969696969663;3.1515151515151394;7.272727272727243;0.5454545454545442!7;0.0;0.5454545454545442;0.0;11.393939393939348!8;0.0;9.757575757575726;2.181818181818174;0.0!9;1.090909090909087;0.0;0.0;10.848484848484807!10;0.0;0.0;10.848484848484807;1.090909090909087!11;1.090909090909087;7.696969696969668;0.9696969696969663;2.181818181818174!12;3.1515151515151394;6.606060606060587;0.0;2.181818181818174 | |||
|entrez_gene_id=4086 | |entrez_gene_id=4086 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:UBIP1_f1~SMAD1_si | |motif_cluster_2013_march_motif_members= /HOCOMOCO:UBIP1_f1~SMAD1_si | ||
Revision as of 10:47, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known112
- db :HOCOMOCO
- Id :SMAD1_si
- name :
- score :0.20911607655690156
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
