NonredundantMotifs:47: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;22.30931;21.438092;7.673808;70.172457!2;24.325415;5.826091;0;91.442161!3;0.99705;11.744536;0.968043;107.884038!4;0;0;9.700364;111.893303!5;0.955093;0.991855;0;119.646719!6;118.721655;0;1.914486;0.957526!7;117.73104;0;0.993391;2.869236!8;0.950568;0.998636;0.978917;118.665546!9;2.945647;1.959559;17.463171;99.22529!10;9.694439;0;99.253511;12.645717!11;30.119807;18.632427;65.075649;7.765784!12;20.336801;21.330884;0.972578;78.953404!13;15.541067;4.841014;5.888014;95.323572 | |PWM=P0;A;C;G;T!1;22.30931;21.438092;7.673808;70.172457!2;24.325415;5.826091;0;91.442161!3;0.99705;11.744536;0.968043;107.884038!4;0;0;9.700364;111.893303!5;0.955093;0.991855;0;119.646719!6;118.721655;0;1.914486;0.957526!7;117.73104;0;0.993391;2.869236!8;0.950568;0.998636;0.978917;118.665546!9;2.945647;1.959559;17.463171;99.22529!10;9.694439;0;99.253511;12.645717!11;30.119807;18.632427;65.075649;7.765784!12;20.336801;21.330884;0.972578;78.953404!13;15.541067;4.841014;5.888014;95.323572 | ||
|entrez_gene_id= | |entrez_gene_id=NKX6-1,2 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX6-1,2.p2~HOX(A6,A7,B6,B7).p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0132.1;Pdx1 /SWISSREGULON:NKX6-1,2.p2~HOX(A6,A7,B6,B7).p2 /HOMER:NANOG_mES-Nanog-ChIP-Seq /UNIPROBE:Hoxa3_secondary;SCI09 /HOCOMOCO:NANOG_f1~ISL1_f1 | ||
|name=known47 | |name=known47 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=NKX6-1,2.p2 | |representative_motif_id=NKX6-1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=NKX6-1,2 | ||
|score=0.10111669751939348 | |score=0.10111669751939348 | ||
|uniprot_entry_name= | |uniprot_entry_name=NKX6-1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known47
- db :SWISSREGULON
- Id :NKX6-1,2.p2
- name :NKX6-1,2
- score :0.10111669751939348
- External refs:
- Internal refs:
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Sub Motif Members
