Personal tools

NonredundantMotifs:67: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;49.636582;188.331903;15.653514;65.913674!2;182.44103;5.232991;115.211513;16.650139!3;7.337097;152.958876;94.4080779999999;64.831622!4;30.046149;234.720516;9.86091;44.908098!5;44.443345;52.432663;33.42907;189.230595!6;10.977514;105.461445;155.778334;47.31838!7;9.831132;83.061223;29.277186;197.366132!8;8.936186;88.680118;81.012872;140.906497!9;17.504556;158.862486;62.177035;80.991596!10;78.182046;85.4894369999999;59.257764;96.606426!11;60.938647;79.430435;100.631992;78.5345989999999!12;47.020353;42.565187;66.578624;163.371509!13;8.992938;121.972905;12.342448;176.227382!14;12.196962;13.649225;47.03758;246.651906!15;11.148649;1.681438;261.7799;44.925686!16;7.063101;20.106863;287.945606;4.420103!17;39.772017;206.298665;22.331128;51.133863!18;157.571746;30.761384;77.413063;53.78948!19;39.591222;165.350128;69.789597;44.804726!20;14.667034;105.169377;116.310559;83.3887029999999!21;16.137777;134.425176;120.375801;48.596919!22;81.0205269999999;49.839038;66.225921;122.450187!23;12.225561;72.6054409999999;222.152379;12.552292!24;8.541623;266.343039;19.712826;24.938185!25;35.913149;251.939662;12.449359;19.233503!26;169.542509;36.967714;44.471721;68.553729!27;113.720548;12.885882;156.635014;36.294229!28;44.486897;161.960429;62.076499;51.011848!29;80.2461149999999;93.87162;28.368203;117.049735
|PWM=PO;A;C;G;T!1;49.636582;188.331903;15.653514;65.913674!2;182.44103;5.232991;115.211513;16.650139!3;7.337097;152.958876;94.4080779999999;64.831622!4;30.046149;234.720516;9.86091;44.908098!5;44.443345;52.432663;33.42907;189.230595!6;10.977514;105.461445;155.778334;47.31838!7;9.831132;83.061223;29.277186;197.366132!8;8.936186;88.680118;81.012872;140.906497!9;17.504556;158.862486;62.177035;80.991596!10;78.182046;85.4894369999999;59.257764;96.606426!11;60.938647;79.430435;100.631992;78.5345989999999!12;47.020353;42.565187;66.578624;163.371509!13;8.992938;121.972905;12.342448;176.227382!14;12.196962;13.649225;47.03758;246.651906!15;11.148649;1.681438;261.7799;44.925686!16;7.063101;20.106863;287.945606;4.420103!17;39.772017;206.298665;22.331128;51.133863!18;157.571746;30.761384;77.413063;53.78948!19;39.591222;165.350128;69.789597;44.804726!20;14.667034;105.169377;116.310559;83.3887029999999!21;16.137777;134.425176;120.375801;48.596919!22;81.0205269999999;49.839038;66.225921;122.450187!23;12.225561;72.6054409999999;222.152379;12.552292!24;8.541623;266.343039;19.712826;24.938185!25;35.913149;251.939662;12.449359;19.233503!26;169.542509;36.967714;44.471721;68.553729!27;113.720548;12.885882;156.635014;36.294229!28;44.486897;161.960429;62.076499;51.011848!29;80.2461149999999;93.87162;28.368203;117.049735
|entrez_gene_id=
|entrez_gene_id=NFIX
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2 /JASPAR:MA0119.1;TLX1::NFIC /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2
|motif_cluster_2013_march_motif_members= /JASPAR:MA0119.1;TLX1::NFIC /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2 /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2
|name=known67
|name=known67
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=NFIX.p2
|representative_motif_id=NFIX.p2
|representative_motif_name=  
|representative_motif_name=NFIX
|score=3.539803224280569
|score=3.539803224280569
|uniprot_entry_name=
|uniprot_entry_name=NFIX
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known67
  • db :SWISSREGULON
  • Id :NFIX.p2
  • name :NFIX
  • score :3.539803224280569
  • External refs:
EntrezGene:NFIX
UniProt:NFIX

  • Internal refs:
EntrezGene:NFIX


Motif matrix
POACGT
149.636582188.33190315.65351465.913674
2182.441035.232991115.21151316.650139
37.337097152.95887694.408077999999964.831622
430.046149234.7205169.8609144.908098
544.44334552.43266333.42907189.230595
610.977514105.461445155.77833447.31838
79.83113283.06122329.277186197.366132
88.93618688.68011881.012872140.906497
917.504556158.86248662.17703580.991596
1078.18204685.489436999999959.25776496.606426
1160.93864779.430435100.63199278.5345989999999
1247.02035342.56518766.578624163.371509
138.992938121.97290512.342448176.227382
1412.19696213.64922547.03758246.651906
1511.1486491.681438261.779944.925686
167.06310120.106863287.9456064.420103
1739.772017206.29866522.33112851.133863
18157.57174630.76138477.41306353.78948
1939.591222165.35012869.78959744.804726
2014.667034105.169377116.31055983.3887029999999
2116.137777134.425176120.37580148.596919
2281.020526999999949.83903866.225921122.450187
2312.22556172.6054409999999222.15237912.552292
248.541623266.34303919.71282624.938185
2535.913149251.93966212.44935919.233503
26169.54250936.96771444.47172168.553729
27113.72054812.885882156.63501436.294229
2844.486897161.96042962.07649951.011848
2980.246114999999993.8716228.368203117.049735

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:67&oldid=2578454"