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NonredundantMotifs:3: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.0;0.0;7.030303030303032;0.969696969696968!2;0.0;1.939393939393936;4.0;2.060606060606064!3;0.0;2.060606060606064;3.030303030303032;2.909090909090912!4;0.0;2.060606060606064;4.969696969696968;0.969696969696968!5;1.090909090909088;0.0;6.909090909090912;0.0!6;0.0;6.909090909090912;0.0;1.090909090909088!7;4.0;0.0;0.969696969696968;3.030303030303032!8;0.0;7.030303030303032;0.969696969696968;0.0!9;0.0;0.969696969696968;7.030303030303032;0.0!10;0.0;0.969696969696968;0.0;7.030303030303032!11;0.0;0.0;8.0;0.0!12;0.969696969696968;1.939393939393936;5.090909090909088;0.0!13;0.969696969696968;5.939393939393936;1.090909090909088;0.0!14;2.909090909090912;2.060606060606064;0.969696969696968;2.060606060606064!15;0.0;2.060606060606064;0.969696969696968;4.969696969696968!16;0.0;2.060606060606064;2.909090909090912;3.030303030303032!17;2.939393939393936;2.090909090909088;1.969696969696968;1.0
|PWM=P0;A;C;G;T!1;49.35073723170061;150.7683740892913;253.09512650745353;45.702811667594396!2;55.39665095234532;177.5259004806322;173.39542471041662;92.59907335264587!3;67.5527924307494;181.64982064577737;232.70337908917296;17.011057330340236!4;37.03304980879144;99.20871780863575;107.466564738888;255.20871713972505!5;423.9836515158341;0.514682110703455;72.87466953739238;1.5440463321103701!6;0.0;498.40236738533685;0.0;0.514682110703455!7;0.0;1.02936422140691;497.3730031639301;0.514682110703455!8;0.0;0.0;0.0;498.91704949604!9;0.0;0.0;498.91704949604;0.0!10;103.88964770479032;294.76191451619604;51.77168729100009;48.493799984054206!11;67.98080621865238;131.67867617287078;232.34384398606207;66.91372311845431!12;31.222632805291347;153.94855506020525;195.21194695602236;118.53391467452127
|entrez_gene_id=23493
|entrez_gene_id=3091
|motif_cluster_2013_march_motif_members= /JASPAR:MA0259.1;HIF1A::ARNT~MA0147.1;Myc~MA0093.1;USF1~MA0058.1;MAX~MA0059.1;MYC::MAX~MA0104.2;Mycn~MA0004.1;Arnt~MA0006.1;Arnt::Ahr /SWISSREGULON:AHR_ARNT_ARNT2.p2~HIF1A.p2~ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~SREBF1,2.p2~bHLH_family.p2~HES1.p2~TFEB.p2 /HOMER:ATF3_K562-ATF3-ChIP-Seq~MYCN_mES-nMyc-ChIP-Seq~MAX_K562-Max-ChIP-Seq~USF1_GM12878-Usf1-ChIP-Seq~MYC_LNCAP-cMyc-ChIP-Seq~BHLHE40_HepG2-BHLHE40-ChIP-Seq~HIF1A_MCF7-HIF1a-ChIP-Seq~MYC_mES-cMyc-ChIP-Seq /UNIPROBE:Bhlhb2_primary;SCI09~Max_primary;SCI09~Max_secondary;SCI09~Bhlhb2_secondary;SCI09 /HOCOMOCO:TFE3_f1~TFEB_f1~BHE40_f2~BMAL1_f1~AHR_si~MYCN_si~MITF_f1~MYC_f1~ARNT_f1~HES1_f1~USF1_f1~HEY2_f1~HIF1A_si~MAX_f1~USF2_f1~ENOA_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:USF2_f1~MITF_f1~HEY2_f1~TFE3_f1~HES1_f1~TFEB_f1~USF1_f1~ARNT_f1~BHE40_f2~AHR_si~HIF1A_si~BMAL1_f1~ENOA_si~MYCN_si~MAX_f1~MYC_f1 /HOMER:ATF3_K562-ATF3-ChIP-Seq~BHLHE40_HepG2-BHLHE40-ChIP-Seq~HIF1A_MCF7-HIF1a-ChIP-Seq~USF1_GM12878-Usf1-ChIP-Seq~MYC_LNCAP-cMyc-ChIP-Seq~MYCN_mES-nMyc-ChIP-Seq~MYC_mES-cMyc-ChIP-Seq~MAX_K562-Max-ChIP-Seq /JASPAR:MA0147.1;Myc~MA0004.1;Arnt~MA0104.2;Mycn~MA0059.1;MYC::MAX~MA0058.1;MAX~MA0093.1;USF1~MA0259.1;HIF1A::ARNT~MA0006.1;Arnt::Ahr /SWISSREGULON:ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~HIF1A.p2~HES1.p2~AHR_ARNT_ARNT2.p2~SREBF1,2.p2~TFEB.p2~bHLH_family.p2 /UNIPROBE:Max_secondary;SCI09~Max_primary;SCI09~Bhlhb2_primary;SCI09~Bhlhb2_secondary;SCI09
|name=known3
|name=non-redundant3
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=HEY2_f1
|representative_motif_id=HIF1A_si
|representative_motif_name=  
|representative_motif_name=  
|score=3.475964650151725
|score=0.627881956384904
|uniprot_entry_name=HEY2_HUMAN
|uniprot_entry_name=HIF1A_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant3
  • db :HOCOMOCO
  • Id :HIF1A_si
  • name  :
  • score :0.627881956384904
  • External refs:
EntrezGene:3091
UniProt:3091

  • Internal refs:
EntrezGene:3091


Motif matrix
P0ACGT
149.35073723170061150.7683740892913253.0951265074535345.702811667594396
255.39665095234532177.5259004806322173.3954247104166292.59907335264587
367.5527924307494181.64982064577737232.7033790891729617.011057330340236
437.0330498087914499.20871780863575107.466564738888255.20871713972505
5423.98365151583410.51468211070345572.874669537392381.5440463321103701
60.0498.402367385336850.00.514682110703455
70.01.02936422140691497.37300316393010.514682110703455
80.00.00.0498.91704949604
90.00.0498.917049496040.0
10103.88964770479032294.7619145161960451.7716872910000948.493799984054206
1167.98080621865238131.67867617287078232.3438439860620766.91372311845431
1231.222632805291347153.94855506020525195.21194695602236118.53391467452127

Sub Motif Members

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