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NonredundantMotifs:83: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;4.956896551724147;2.4784482758620734;12.392241379310343;4.2025862068965605!2;5.064655172413792;3.663793103448264;11.314655172413797;3.9870689655172464!3;7.866379310344824;0.9698275862068956;11.314655172413797;3.8793103448275774!4;0.0;0.9698275862068956;18.53448275862068;4.525862068965519!5;1.0775862068965525;4.633620689655164;10.452586206896543;7.866379310344824!6;5.495689655172419;1.9396551724137938;4.956896551724147;11.637931034482756!7;2.6939655172413874;13.038793103448262;4.741379310344834;3.556034482758619!8;12.715517241379303;3.0172413793103465;7.219827586206907;1.0775862068965525!9;5.280172413793106;8.081896551724137;7.866379310344824;2.801724137931032!10;4.0948275862068915;15.301724137931044;2.6939655172413874;1.9396551724137938!11;5.603448275862064;7.543103448275866;7.004310344827592;3.8793103448275774!12;11.853448275862071;3.124999999999991;6.46551724137932;2.586206896551718!13;8.728448275862055;5.926724137931023;9.374999999999998;0.0!14;20.150862068965523;0.0;3.0172413793103465;0.8620689655172411!15;0.0;0.0;24.0301724137931;0.0!16;0.0;0.0;16.91810344827586;7.112068965517238!17;4.4181034482758506;0.0;0.0;19.61206896551725!18;2.0474137931034484;20.366379310344836;1.6163793103448276;0.0!19;22.952586206896555;1.0775862068965525;0.0;0.0!20;6.815732758620697;8.2165948275862;7.785560344827597;1.2122844827586194
|PWM=P0;A;C;G;T!1;67.7808040271798;1.9706190330777424;46.594561776516336;4.654015163226166!2;0.0;0.41928064533569015;119.07130903145557;1.50941032320849!3;5.924426760444315;3.5219574208198017;77.60454078924587;33.949075029489876!4;5.7022167765653915;0.8385612906713803;9.949520955666939;104.50970097709619!5;0.7547051616042425;88.77832619669711;21.96608673468982;9.500881907008763!6;106.18682355843885;0.0;13.303766118352401;1.50941032320849!7;27.47123284979842;36.942756353484775;26.016320252334598;30.56969054438221!8;20.984952508306378;46.13757214754736;39.73514793512246;14.142327409023792!9;33.56337186837699;23.026858009240172;48.22975629332561;16.18001382905735!10;53.62168787604448;12.213636440479716;38.70373506389457;16.460940619581226!11;29.789846060355853;30.26362443143611;52.2254920852257;8.72103742298236!12;71.78489039939059;15.928445441855935;21.798374476555544;11.48828968219791!13;8.775535148727005;13.55533450555382;93.83483326314744;4.834297082571521!14;12.075282585667871;6.595275792981415;73.15594686778728;29.173494753563425!15;16.880221264916923;13.219909989285263;17.605568023198714;73.2943007225991!16;11.899175956477901;84.21656153359375;16.20097786132405;8.683284648604165!17;87.72590550245758;10.104663552590129;13.848830957288865;9.320599987663396
|entrez_gene_id=5916
|entrez_gene_id=5914
|motif_cluster_2013_march_motif_members= /JASPAR:MA0159.1;RXR::RAR_DR5 /HOCOMOCO:RARA_f2~RARG_do
|motif_cluster_2013_march_motif_members= /HOCOMOCO:RARG_do~RARA_f2 /JASPAR:MA0159.1;RXR::RAR_DR5
|name=known83
|name=non-redundant83
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=RARG_do
|representative_motif_id=RARA_f2
|representative_motif_name=  
|representative_motif_name=  
|score=0.4986598336095242
|score=0.40599813945122243
|uniprot_entry_name=RARG_HUMAN
|uniprot_entry_name=RARA_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant83
  • db :HOCOMOCO
  • Id :RARA_f2
  • name  :
  • score :0.40599813945122243
  • External refs:
EntrezGene:5914
UniProt:5914

  • Internal refs:
EntrezGene:5914


Motif matrix
P0ACGT
167.78080402717981.970619033077742446.5945617765163364.654015163226166
20.00.41928064533569015119.071309031455571.50941032320849
35.9244267604443153.521957420819801777.6045407892458733.949075029489876
45.70221677656539150.83856129067138039.949520955666939104.50970097709619
50.754705161604242588.7783261966971121.966086734689829.500881907008763
6106.186823558438850.013.3037661183524011.50941032320849
727.4712328497984236.94275635348477526.01632025233459830.56969054438221
820.98495250830637846.1375721475473639.7351479351224614.142327409023792
933.5633718683769923.02685800924017248.2297562933256116.18001382905735
1053.6216878760444812.21363644047971638.7037350638945716.460940619581226
1129.78984606035585330.2636244314361152.22549208522578.72103742298236
1271.7848903993905915.92844544185593521.79837447655554411.48828968219791
138.77553514872700513.5553345055538293.834833263147444.834297082571521
1412.0752825856678716.59527579298141573.1559468677872829.173494753563425
1516.88022126491692313.21990998928526317.60556802319871473.2943007225991
1611.89917595647790184.2165615335937516.200977861324058.683284648604165
1787.7259055024575810.10466355259012913.8488309572888659.320599987663396

Sub Motif Members

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