FFCP PHASE1:Hg19::chr10:15139071..15139106,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10557|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30329|TSSclassifier=S|UniProt=P78345|association_with_transcript=-72bp_to_ENST00000378203_5end|coexpression_cluster_id=C1|description=CAGE_peak_6_at_RPP38_5end|id=chr10:15139071..15139106,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;5.06e-10;6!CL:0000404;5.06e-10;6|ontology_enrichment_celltype_v019_2=CL:0000540,9.19e-10,6;CL:0000031,9.19e-10,6;CL:0000404,9.19e-10,6;CL:0000047,3.28e-07,8|ontology_enrichment_development_v019=CL:0000031;5.06e-10;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0.281908808191942,1.0007329835313,0.446961094427288,0,0,1.26343974685366,0.783556884599516,0.245733936501509,0.697801167972428,0,0.527533956456907,0.123766352960047,0,1.34465029290355,0,0,0,1.23121058076788,1.22400414746552,0.626909442956176,1.71741592278634,0.273748850145768,0.753255837568817,0.61130724598361,0.656804715599566,0.393553906568396,0,0.383829398097213,0.154816123316076,0.919421224478927,0.30120591877825,0.739508020333575,0.387336002901508,0.142169232487422,0.293600439334847,0,0,0,0,0,0.257575567634187,0,0,0.485168122375632,0,0,0.309706370895104,0,0.768482119587302,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0,0,0,0.150176892841506,0.16072558669708,0.285012743741249,0.79566670879636,0.365328307529268,1.75996244461323,0.546138611262131,0.889509253863555,0.426730222566507,0.800791974072025,1.14950487990897,1.32208974556972,0,0.569212969109448,0.587237189370939,0,3.96513985737078,0,0.526768169550154,0,0.393010762749165,0.205601498999509,0,0,0,0,0.111410456885174,0,0.443067789167242,0,0.384273959177026,0.390178042679635,0,0.276350017785848,0,0.14828656316206,0,0,0.226618685395132,0.383220493601921,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.255973222308837,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0.12786256184353,0.361439152384566,0,0.724232594804119,0,0,0.661743720148475,0.665188192387692,0.87834785693126,4.1913304159268,0.728590576585084,1.11235332835329,0.324547393654683,0.174129737299267,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0,0.626984899610432,0,0,0.33472061276467,0.402829317109147,0,0.488124115096339,0.367663080345869,0.81014194788176,0.357198913136319,0,0.563057402416611,0,0,0.732806975721629,1.31780417436063,0,0.436094052142534,0.993943903390637,0.12663051166458,0,0.286836620748814,0.354668382198357,0,0,0.49333509683432,0,0.538842688278752,0.163461903113459,1.05950199351452,1.15235184896,1.17160715916898,0.624320153660641,1.1409436430889,0.448346041655403,0.822041490506354,0.323745888736263,0.140450806702248,0.408308342509787,0.245668634623536,0.516628905878827,0,1.48360157567134,0,0,0.336672227908132,0.250237039743928,0.554128230968366,0.877955241761676,0,0.751190294532984,0.226864366320042,0.538168907066586,0.213557388818567,0.423863802319124,0.300091096084402,0.618315175430633,0,0,0.168776332241266,0.389748020644795,0,0.276149695926898,0,1.06502877754984,0.201504196455281,0.508681776931463,0.773043412653187,0.272746120590835,0.860413786167011,0.975789649036763,1.32529768321485,0.232387885739037,1.0366105501537,3.5324919122588,1.82488679537915,0,0.643240938192885,1.38134921352481,0.928735856063958,0,0.591534000199219,0.674338760312407,0.482022059766964,1.10293972732394,0.435758888184812,1.66089433377768,1.34831308160164,0.588664395376038,0.769494313892781,0,0,0.8231480226628,0,0,2.94848165003288,0,0.441463099414651,0.614942192715568,0.343135620597051,0.219500570817251,0,0.402115889646523,0.185176890317059,0,0,0,0.579652024875384,0.587043471179108,0,0,0.190254152234598,0.790204397959275,0.858486162094873,0,0,0,0,0.335964256397719,0.850650583454319,0.179117045405697,0,0.383382679165211,0.492663237895943,0.176096868026452,0.414656231081544,0.864719720501769,0.25248486685276,0.380987365753014,0,0,1.71072446022705,0.205654985406647,0,0.285826432630578,0.897048674762886,0.43596006883328,0.22001485746285,0.517086863031111,0,0.845302752556,0.26593811658487,1.04007436911366,0.771622122786426,2.83698264046557,0.266422179016099,0,0.542621605391443,0.823240336780769,1.30294473717494,0,0,0.301439377059586,0.871533458600294,0.699810938274399,0,0.502257091432126,0,0.718874566474748,1.14861935834114,0,0.144781306667579,0.205476322550383,0.537182889719687,0.112085143993527,0,0,0,0,0,2.31986643833309,0.167516265334349,5.10351001322531,0,0,0,0.49076596687656,0,0.271265023699736,0.623912584592421,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,0,1.10621501125022,0.521301686808497,1.17480694477644,2.74514739048685,0,0,0.106727557803444,0.303127571446259,0,0.30239029332968,1.24053903909388,0,0,0.384417447767103,0,0.160853921143607,4.45254199334973,0.462629081407967,0.887808626565635,0.3285086240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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10557 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30329 | |||
|TSSclassifier=S | |||
|UniProt=P78345 | |||
|association_with_transcript=-72bp_to_ENST00000378203_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_RPP38_5end | |||
|id=chr10:15139071..15139106,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;5.06e-10;6!CL:0000404;5.06e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.19e-10,6;CL:0000031,9.19e-10,6;CL:0000404,9.19e-10,6;CL:0000047,3.28e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000031;5.06e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p6@RPP38 | |||
}} |
Revision as of 12:35, 10 September 2013
Short description: | p6@RPP38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_RPP38_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -72bp_to_ENST00000378203_5end |
EntrezGene: | RPP38 |
HGNC: | 30329 |
UniProt: | P78345 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.19e-10 | 6 |
neuroblast | 9.19e-10 | 6 |
electrically signaling cell | 9.19e-10 | 6 |
neuronal stem cell | 3.28e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.