FFCP PHASE1:Hg19::chr10:33212601..33212662,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3688 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6153 | |||
|TSSclassifier=W | |||
|UniProt=P05556 | |||
|association_with_transcript=2bp_to_BC113901_5end | |||
|coexpression_cluster_id=C582 | |||
|description=CAGE_peak_6_at_ITGB1_5end | |||
|id=chr10:33212601..33212662,- | |||
|ontology_enrichment_celltype=CL:0000055!7.20e-16!180;CL:0000057!3.30e-12!75;CL:0000548!3.27e-11!679;CL:0000004!3.27e-11!679;CL:0000255!3.27e-11!679;CL:0000012!2.36e-10!682;CL:0000144!1.77e-09!625;CL:0002371!2.93e-08!591;CL:0000222!4.06e-08!119;CL:0000220!5.42e-08!246;CL:0000680!5.67e-08!57;CL:0000056!5.67e-08!57;CL:0000355!5.67e-08!57;CL:0002321!5.77e-08!248;CL:0000393!3.55e-07!60;CL:0000211!3.55e-07!60;CL:0002620!4.31e-07!23;CL:0000187!5.48e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.79e-08;23!CL:0000134;6.82e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.75e-14,76;CL:0000222,2.92e-08,121;CL:0000723,5.21e-08,433;CL:0000048,5.72e-08,427;CL:0000680,5.93e-08,58;CL:0000056,5.93e-08,58;CL:0000355,5.93e-08,58;CL:0002620,9.35e-08,23;CL:0000034,1.58e-07,441;CL:0000187,7.28e-07,55;CL:0000393,7.55e-07,61;CL:0000211,7.55e-07,61;CL:0002334,9.05e-07,12;CL:0002321,9.49e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.33e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.32e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.32e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-08!83;UBERON:0002329!1.01e-08!83;UBERON:0003077!1.01e-08!83;UBERON:0003059!1.01e-08!83;UBERON:0007282!1.01e-08!83;UBERON:0009618!1.01e-08!83;UBERON:0007285!1.01e-08!83;UBERON:0004290!4.74e-08!70;UBERON:0003102!5.04e-08!95;UBERON:0000486!1.13e-07!82;UBERON:0004872!1.90e-07!84;UBERON:0001134!3.11e-07!61;UBERON:0002036!3.11e-07!61;UBERON:0003082!3.11e-07!61;UBERON:0002385!3.53e-07!63;UBERON:0001015!3.53e-07!63;UBERON:0000383!3.53e-07!63;UBERON:0001637!5.03e-07!42;UBERON:0003509!5.03e-07!42;UBERON:0004572!5.03e-07!42;UBERON:0002049!9.38e-07!79;UBERON:0007798!9.38e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.82e-09,99;UBERON:0007524,7.47e-09,73;UBERON:0002329,9.13e-09,71;UBERON:0003059,9.13e-09,71;UBERON:0007282,9.13e-09,71;UBERON:0004290,9.13e-09,71;UBERON:0009618,9.13e-09,71;UBERON:0003077,2.05e-08,72;UBERON:0007285,2.05e-08,72;UBERON:0002199,3.31e-08,46;UBERON:0002416,3.31e-08,46;UBERON:0000486,3.82e-08,83;UBERON:0001134,1.35e-07,62;UBERON:0002036,1.35e-07,62;UBERON:0003082,1.35e-07,62;UBERON:0002385,1.48e-07,64;UBERON:0001015,1.48e-07,64;UBERON:0000383,1.48e-07,64;UBERON:0007503,2.88e-07,78;UBERON:0004872,3.16e-07,83;UBERON:0002097,5.23e-07,41;UBERON:0000926,6.47e-07,315;UBERON:0004120,6.47e-07,315;UBERON:0006603,6.47e-07,315;UBERON:0004573,7.35e-07,33;UBERON:0004571,7.35e-07,33;UBERON:0001637,7.72e-07,42;UBERON:0003509,7.72e-07,42;UBERON:0004572,7.72e-07,42 | |||
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| |||
|short_description=p6@ITGB1 | |||
}} |
Revision as of 13:13, 10 September 2013
Short description: | p6@ITGB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_ITGB1_5end |
Coexpression cluster: | C582_Smooth_tenocyte_mesenchymal_leiomyoma_Fibroblast_Olfactory_Aortic |
Association with transcript: | 2bp_to_BC113901_5end |
EntrezGene: | ITGB1 |
HGNC: | 6153 |
UniProt: | P05556 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.75e-14 | 76 |
mesodermal cell | 2.92e-08 | 121 |
somatic stem cell | 5.21e-08 | 433 |
multi fate stem cell | 5.72e-08 | 427 |
muscle precursor cell | 5.93e-08 | 58 |
myoblast | 5.93e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.93e-08 | 58 |
skin fibroblast | 9.35e-08 | 23 |
stem cell | 1.58e-07 | 441 |
muscle cell | 7.28e-07 | 55 |
electrically responsive cell | 7.55e-07 | 61 |
electrically active cell | 7.55e-07 | 61 |
preadipocyte | 9.05e-07 | 12 |
embryonic cell | 9.49e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.82e-09 | 99 |
dense mesenchyme tissue | 7.47e-09 | 73 |
somite | 9.13e-09 | 71 |
presomitic mesoderm | 9.13e-09 | 71 |
presumptive segmental plate | 9.13e-09 | 71 |
dermomyotome | 9.13e-09 | 71 |
trunk paraxial mesoderm | 9.13e-09 | 71 |
paraxial mesoderm | 2.05e-08 | 72 |
presumptive paraxial mesoderm | 2.05e-08 | 72 |
integument | 3.31e-08 | 46 |
integumental system | 3.31e-08 | 46 |
multilaminar epithelium | 3.82e-08 | 83 |
skeletal muscle tissue | 1.35e-07 | 62 |
striated muscle tissue | 1.35e-07 | 62 |
myotome | 1.35e-07 | 62 |
muscle tissue | 1.48e-07 | 64 |
musculature | 1.48e-07 | 64 |
musculature of body | 1.48e-07 | 64 |
epithelial vesicle | 2.88e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 3.16e-07 | 83 |
skin of body | 5.23e-07 | 41 |
mesoderm | 6.47e-07 | 315 |
mesoderm-derived structure | 6.47e-07 | 315 |
presumptive mesoderm | 6.47e-07 | 315 |
systemic artery | 7.35e-07 | 33 |
systemic arterial system | 7.35e-07 | 33 |
artery | 7.72e-07 | 42 |
arterial blood vessel | 7.72e-07 | 42 |
arterial system | 7.72e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.32e-10 | 14 |
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