FFCP PHASE1:Hg19::chr10:43633883..43633904,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55454|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24292|TSSclassifier=S|UniProt=Q8N6G5|association_with_transcript=-29bp_to_ENST00000374464,ENST00000374466,NM_018590,uc001jam.1,uc001jan.2_5end|coexpression_cluster_id=C0|description=CAGE_peak_1_at_CSGALNACT2_5end|id=chr10:43633883..43633904,+|ontology_enrichment_celltype=CL:0000766!7.56e-33!76;CL:0000738!5.35e-32!140;CL:0000557!1.86e-29!71;CL:0002057!8.05e-28!42;CL:0000839!1.10e-27!70;CL:0002009!1.64e-27!65;CL:0002194!1.50e-26!63;CL:0000576!1.50e-26!63;CL:0000040!1.50e-26!63;CL:0000559!1.50e-26!63;CL:0002031!2.66e-26!124;CL:0000037!1.77e-25!172;CL:0000566!1.77e-25!172;CL:0002087!3.35e-25!119;CL:0000860!6.10e-24!45;CL:0002032!5.28e-23!165;CL:0000837!5.28e-23!165;CL:0000763!4.56e-22!112;CL:0000049!4.56e-22!112;CL:0000134!8.18e-22!358;CL:0000988!9.86e-22!182;CL:0002320!7.81e-21!365;CL:0000048!1.20e-18!430;CL:0000723!2.09e-17!436;CL:0000034!1.66e-16!444;CL:0000219!3.70e-16!390|ontology_enrichment_celltype_v019=CL:0000860;8.30e-21;33!CL:0002057;8.30e-21;33!CL:0000473;4.12e-20;39!CL:0000234;4.12e-20;39!CL:0000576;1.41e-16;48!CL:0000766;1.55e-15;69!CL:0002087;2.55e-08;104!CL:0000738;5.69e-08;136!CL:0000763;4.29e-07;100|ontology_enrichment_celltype_v019_2=CL:0000766,6.44e-36,72;CL:0000738,7.56e-34,136;CL:0000557,1.95e-32,67;CL:0000473,5.01e-31,48;CL:0000234,5.01e-31,48;CL:0000839,1.48e-30,66;CL:0002009,1.51e-30,61;CL:0002194,1.40e-29,59;CL:0000576,1.40e-29,59;CL:0000040,1.40e-29,59;CL:0000559,1.40e-29,59;CL:0002031,4.66e-28,120;CL:0000860,8.05e-28,42;CL:0002057,8.05e-28,42;CL:0002087,5.87e-27,115;CL:0000037,7.95e-27,168;CL:0002032,2.69e-24,161;CL:0000837,2.69e-24,161;CL:0000763,9.80e-24,108;CL:0000049,9.80e-24,108;CL:0000988,2.75e-23,177;CL:0000134,4.45e-23,354;CL:0002320,4.68e-22,361;CL:0000048,8.40e-20,427;CL:0000723,1.61e-18,433;CL:0000034,1.39e-17,441;CL:0000219,3.41e-17,386|ontology_enrichment_development_v019=CL:0002057;3.05e-20;42!CL:0000049;3.79e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.51e-28!102;UBERON:0003061!1.51e-28!102;UBERON:0002371!9.93e-28!80;UBERON:0001474!8.18e-27!86;UBERON:0004765!5.93e-25!101;UBERON:0001434!5.93e-25!101;UBERON:0002193!1.38e-24!112;UBERON:0002384!4.54e-21!375;UBERON:0002405!1.28e-18!115;UBERON:0002204!2.04e-17!167;UBERON:0003081!8.26e-10!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.02e-30,98;UBERON:0003061,1.02e-30,98;UBERON:0002371,2.62e-30,76;UBERON:0001474,3.49e-29,82;UBERON:0002405,4.33e-27,93;UBERON:0004765,1.37e-26,90;UBERON:0002193,2.15e-26,108;UBERON:0001434,4.35e-26,100;UBERON:0002384,2.76e-22,371;UBERON:0002204,3.93e-18,167;UBERON:0003081,5.80e-13,203;UBERON:0000926,1.17e-09,315;UBERON:0004120,1.17e-09,315;UBERON:0006603,1.17e-09,315|phase1_expression=17.0777676514323,18.1985445307336,17.9012093201883,15.0109947529696,8.93922188854576,10.4680622892044,0,13.8978372153903,4.17897005119742,2.94880723801811,2.09340350391728,4.80571018686379,2.90143676051299,8.53987835424322,10.6047160232933,8.74022690387308,9.04041792035965,9.49403117503585,12.6862527685532,3.20114750999649,3.26401105990805,5.64218498660558,6.01095572975219,5.74872585306114,9.0390700508258,5.42535180810454,6.07544361929599,3.62069594042925,46.0236203913218,71.0084386479843,97.2245254424957,0.919421224478927,4.819294700452,4.43704812200145,17.1202513282467,6.96629239188365,18.4968276780954,94.733214858951,106.489101606645,103.948207072893,30.0046735481499,29.7982172737461,31.4242192513708,156.448504926812,180.246825139562,133.178649592111,186.175658561453,251.223579581336,210.60033220867,218.646218164834,228.495350223958,137.869140025045,313.718569470323,313.060071538156,181.471492036418,182.595069356327,201.950551042806,137.081325511502,298.43179506163,261.557157067016,244.866119181033,134.57933047618,199.862584936875,117.211806396491,334.611252138757,383.552411891211,310.165479999796,239.94247532019,266.477771312723,161.588500460607,231.86800950858,328.503651300908,236.397403418341,40.9835255445167,44.6469029926591,40.2544599376082,57.0629446224195,64.5760639218477,95.7924496714598,42.7519115611873,34.4125851554426,47.1273516712756,8.79981222306614,8.19207916893197,11.5636203002262,6.40095333849761,8.00791974072025,14.3688109988621,12.5598525829124,7.63243003628291,18.2148150115023,19.378827249241,21.4073007750128,29.0776922873857,49.3247535423752,9.2184429671277,40.5222126434496,25.1526888159465,32.4850368419225,19.3936334653187,33.2440711966262,35.9820332358397,31.1722765452658,19.274009041135,32.7012557297069,23.0395250366966,33.0380713793319,16.6518715643378,19.6389614815416,17.265979983386,14.64655094265,12.1717296008722,26.3950082428468,30.2321135741376,28.2245914273437,16.8830920619374,29.124757513746,23.0230388473362,24.7959298179113,12.1054857443157,18.8814201618361,15.207232711174,15.2080870268551,15.614366560839,6.246536327617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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55454 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24292 | |||
|TSSclassifier=S | |||
|UniProt=Q8N6G5 | |||
|association_with_transcript=-29bp_to_ENST00000374464,ENST00000374466,NM_018590,uc001jam.1,uc001jan.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_CSGALNACT2_5end | |||
|id=chr10:43633883..43633904,+ | |||
|ontology_enrichment_celltype=CL:0000766!7.56e-33!76;CL:0000738!5.35e-32!140;CL:0000557!1.86e-29!71;CL:0002057!8.05e-28!42;CL:0000839!1.10e-27!70;CL:0002009!1.64e-27!65;CL:0002194!1.50e-26!63;CL:0000576!1.50e-26!63;CL:0000040!1.50e-26!63;CL:0000559!1.50e-26!63;CL:0002031!2.66e-26!124;CL:0000037!1.77e-25!172;CL:0000566!1.77e-25!172;CL:0002087!3.35e-25!119;CL:0000860!6.10e-24!45;CL:0002032!5.28e-23!165;CL:0000837!5.28e-23!165;CL:0000763!4.56e-22!112;CL:0000049!4.56e-22!112;CL:0000134!8.18e-22!358;CL:0000988!9.86e-22!182;CL:0002320!7.81e-21!365;CL:0000048!1.20e-18!430;CL:0000723!2.09e-17!436;CL:0000034!1.66e-16!444;CL:0000219!3.70e-16!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.30e-21;33!CL:0002057;8.30e-21;33!CL:0000473;4.12e-20;39!CL:0000234;4.12e-20;39!CL:0000576;1.41e-16;48!CL:0000766;1.55e-15;69!CL:0002087;2.55e-08;104!CL:0000738;5.69e-08;136!CL:0000763;4.29e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.44e-36,72;CL:0000738,7.56e-34,136;CL:0000557,1.95e-32,67;CL:0000473,5.01e-31,48;CL:0000234,5.01e-31,48;CL:0000839,1.48e-30,66;CL:0002009,1.51e-30,61;CL:0002194,1.40e-29,59;CL:0000576,1.40e-29,59;CL:0000040,1.40e-29,59;CL:0000559,1.40e-29,59;CL:0002031,4.66e-28,120;CL:0000860,8.05e-28,42;CL:0002057,8.05e-28,42;CL:0002087,5.87e-27,115;CL:0000037,7.95e-27,168;CL:0002032,2.69e-24,161;CL:0000837,2.69e-24,161;CL:0000763,9.80e-24,108;CL:0000049,9.80e-24,108;CL:0000988,2.75e-23,177;CL:0000134,4.45e-23,354;CL:0002320,4.68e-22,361;CL:0000048,8.40e-20,427;CL:0000723,1.61e-18,433;CL:0000034,1.39e-17,441;CL:0000219,3.41e-17,386 | |||
|ontology_enrichment_development_v019=CL:0002057;3.05e-20;42!CL:0000049;3.79e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.51e-28!102;UBERON:0003061!1.51e-28!102;UBERON:0002371!9.93e-28!80;UBERON:0001474!8.18e-27!86;UBERON:0004765!5.93e-25!101;UBERON:0001434!5.93e-25!101;UBERON:0002193!1.38e-24!112;UBERON:0002384!4.54e-21!375;UBERON:0002405!1.28e-18!115;UBERON:0002204!2.04e-17!167;UBERON:0003081!8.26e-10!216 | |||
|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@CSGALNACT2 | |||
}} |
Revision as of 13:25, 10 September 2013
Short description: | p1@CSGALNACT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CSGALNACT2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -29bp_to_ENST00000374464, ENST00000374466, NM_018590, uc001jam.1, uc001jan.2_5end |
EntrezGene: | CSGALNACT2 |
HGNC: | 24292 |
UniProt: | Q8N6G5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.44e-36 | 72 |
leukocyte | 7.56e-34 | 136 |
granulocyte monocyte progenitor cell | 1.95e-32 | 67 |
defensive cell | 5.01e-31 | 48 |
phagocyte | 5.01e-31 | 48 |
myeloid lineage restricted progenitor cell | 1.48e-30 | 66 |
macrophage dendritic cell progenitor | 1.51e-30 | 61 |
monopoietic cell | 1.40e-29 | 59 |
monocyte | 1.40e-29 | 59 |
monoblast | 1.40e-29 | 59 |
promonocyte | 1.40e-29 | 59 |
hematopoietic lineage restricted progenitor cell | 4.66e-28 | 120 |
classical monocyte | 8.05e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.05e-28 | 42 |
nongranular leukocyte | 5.87e-27 | 115 |
hematopoietic stem cell | 7.95e-27 | 168 |
hematopoietic oligopotent progenitor cell | 2.69e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.69e-24 | 161 |
myeloid cell | 9.80e-24 | 108 |
common myeloid progenitor | 9.80e-24 | 108 |
hematopoietic cell | 2.75e-23 | 177 |
mesenchymal cell | 4.45e-23 | 354 |
connective tissue cell | 4.68e-22 | 361 |
multi fate stem cell | 8.40e-20 | 427 |
somatic stem cell | 1.61e-18 | 433 |
stem cell | 1.39e-17 | 441 |
motile cell | 3.41e-17 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.02e-30 | 98 |
blood island | 1.02e-30 | 98 |
bone marrow | 2.62e-30 | 76 |
bone element | 3.49e-29 | 82 |
immune system | 4.33e-27 | 93 |
skeletal element | 1.37e-26 | 90 |
hemolymphoid system | 2.15e-26 | 108 |
skeletal system | 4.35e-26 | 100 |
connective tissue | 2.76e-22 | 371 |
musculoskeletal system | 3.93e-18 | 167 |
lateral plate mesoderm | 5.80e-13 | 203 |
mesoderm | 1.17e-09 | 315 |
mesoderm-derived structure | 1.17e-09 | 315 |
presumptive mesoderm | 1.17e-09 | 315 |
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