FFCP PHASE1:Hg19::chr10:94000192..94000197,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22849|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=21746|TSSclassifier=S|UniProt=Q8NE35|association_with_transcript=-74bp_to_uc001khu.1_5end|coexpression_cluster_id=C24|description=CAGE_peak_27_at_CPEB3_5end|id=chr10:94000192..94000197,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;8.69e-18;3|ontology_enrichment_disease=DOID:5409!4.74e-07!4;DOID:1325!5.87e-07!7;DOID:3904!5.87e-07!7|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.10e-23!115;UBERON:0001049!3.87e-14!57;UBERON:0005068!3.87e-14!57;UBERON:0006241!3.87e-14!57;UBERON:0007135!3.87e-14!57;UBERON:0002616!1.66e-13!59;UBERON:0000955!2.01e-13!69;UBERON:0006238!2.01e-13!69;UBERON:0000153!3.44e-13!129;UBERON:0007811!3.44e-13!129;UBERON:0000033!5.42e-13!123;UBERON:0002780!8.42e-13!41;UBERON:0001890!8.42e-13!41;UBERON:0006240!8.42e-13!41;UBERON:0003075!1.41e-12!86;UBERON:0007284!1.41e-12!86;UBERON:0003080!2.03e-12!42;UBERON:0005743!3.03e-12!86;UBERON:0002420!5.46e-12!9;UBERON:0007245!5.46e-12!9;UBERON:0010009!5.46e-12!9;UBERON:0010011!5.46e-12!9;UBERON:0000454!5.46e-12!9;UBERON:0000073!8.84e-12!94;UBERON:0001016!8.84e-12!94;UBERON:0002346!9.05e-12!90;UBERON:0001017!1.08e-11!82;UBERON:0002020!1.10e-11!34;UBERON:0003528!1.10e-11!34;UBERON:0001893!1.40e-11!34;UBERON:0004121!7.28e-11!169;UBERON:0001869!1.65e-10!32;UBERON:0000924!1.95e-10!173;UBERON:0006601!1.95e-10!173;UBERON:0000349!2.41e-10!5;UBERON:0002791!3.04e-10!33;UBERON:0003056!3.91e-10!61;UBERON:0002308!3.76e-08!9;UBERON:0000125!3.76e-08!9;UBERON:0001905!5.87e-08!2;UBERON:0002757!5.87e-08!2;UBERON:0010134!5.87e-08!2;UBERON:0002784!5.87e-08!2;UBERON:0005408!5.87e-08!2;UBERON:0001899!5.87e-08!2;UBERON:0001876!9.87e-08!2;UBERON:0000062!2.90e-07!511;UBERON:0002619!3.06e-07!22;UBERON:0009663!4.68e-07!7|ontology_enrichment_uberon_v019=UBERON:0001905;1.55e-98;2!UBERON:0002757;1.55e-98;2!UBERON:0010134;1.55e-98;2!UBERON:0005408;1.55e-98;2!UBERON:0001899;1.55e-98;2!UBERON:0003296;5.13e-50;4!UBERON:0010133;5.13e-50;4!UBERON:0002784;5.13e-50;4!UBERON:0001894;3.65e-29;7!UBERON:0000966;3.10e-11;5!UBERON:0005388;3.10e-11;5!UBERON:0001802;3.10e-11;5!UBERON:0000970;5.70e-11;20!UBERON:0002104;1.69e-10;21!UBERON:0000020;1.12e-09;23!UBERON:0001032;2.56e-09;24!UBERON:0004456;2.56e-09;24|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.38e-99,2;UBERON:0002757,9.38e-99,2;UBERON:0010134,9.38e-99,2;UBERON:0005408,9.38e-99,2;UBERON:0001899,9.38e-99,2;UBERON:0003296,4.00e-50,4;UBERON:0010133,4.00e-50,4;UBERON:0002784,4.00e-50,4;UBERON:0001894,3.16e-29,7;UBERON:0006222,3.16e-29,7;UBERON:0000970,1.77e-10,21;UBERON:0002104,1.77e-10,21;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000020,2.67e-09,24;UBERON:0001032,2.67e-09,24;UBERON:0004456,2.67e-09,24;UBERON:0003056,4.50e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0.0969890164884194,0,1.58186518546373,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0.2249738915515,0,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21746 | |||
|TSSclassifier=S | |||
|UniProt=Q8NE35 | |||
|association_with_transcript=-74bp_to_uc001khu.1_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_27_at_CPEB3_5end | |||
|id=chr10:94000192..94000197,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.69e-18;3 | |||
|ontology_enrichment_disease=DOID:5409!4.74e-07!4;DOID:1325!5.87e-07!7;DOID:3904!5.87e-07!7 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.10e-23!115;UBERON:0001049!3.87e-14!57;UBERON:0005068!3.87e-14!57;UBERON:0006241!3.87e-14!57;UBERON:0007135!3.87e-14!57;UBERON:0002616!1.66e-13!59;UBERON:0000955!2.01e-13!69;UBERON:0006238!2.01e-13!69;UBERON:0000153!3.44e-13!129;UBERON:0007811!3.44e-13!129;UBERON:0000033!5.42e-13!123;UBERON:0002780!8.42e-13!41;UBERON:0001890!8.42e-13!41;UBERON:0006240!8.42e-13!41;UBERON:0003075!1.41e-12!86;UBERON:0007284!1.41e-12!86;UBERON:0003080!2.03e-12!42;UBERON:0005743!3.03e-12!86;UBERON:0002420!5.46e-12!9;UBERON:0007245!5.46e-12!9;UBERON:0010009!5.46e-12!9;UBERON:0010011!5.46e-12!9;UBERON:0000454!5.46e-12!9;UBERON:0000073!8.84e-12!94;UBERON:0001016!8.84e-12!94;UBERON:0002346!9.05e-12!90;UBERON:0001017!1.08e-11!82;UBERON:0002020!1.10e-11!34;UBERON:0003528!1.10e-11!34;UBERON:0001893!1.40e-11!34;UBERON:0004121!7.28e-11!169;UBERON:0001869!1.65e-10!32;UBERON:0000924!1.95e-10!173;UBERON:0006601!1.95e-10!173;UBERON:0000349!2.41e-10!5;UBERON:0002791!3.04e-10!33;UBERON:0003056!3.91e-10!61;UBERON:0002308!3.76e-08!9;UBERON:0000125!3.76e-08!9;UBERON:0001905!5.87e-08!2;UBERON:0002757!5.87e-08!2;UBERON:0010134!5.87e-08!2;UBERON:0002784!5.87e-08!2;UBERON:0005408!5.87e-08!2;UBERON:0001899!5.87e-08!2;UBERON:0001876!9.87e-08!2;UBERON:0000062!2.90e-07!511;UBERON:0002619!3.06e-07!22;UBERON:0009663!4.68e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.55e-98;2!UBERON:0002757;1.55e-98;2!UBERON:0010134;1.55e-98;2!UBERON:0005408;1.55e-98;2!UBERON:0001899;1.55e-98;2!UBERON:0003296;5.13e-50;4!UBERON:0010133;5.13e-50;4!UBERON:0002784;5.13e-50;4!UBERON:0001894;3.65e-29;7!UBERON:0000966;3.10e-11;5!UBERON:0005388;3.10e-11;5!UBERON:0001802;3.10e-11;5!UBERON:0000970;5.70e-11;20!UBERON:0002104;1.69e-10;21!UBERON:0000020;1.12e-09;23!UBERON:0001032;2.56e-09;24!UBERON:0004456;2.56e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.38e-99,2;UBERON:0002757,9.38e-99,2;UBERON:0010134,9.38e-99,2;UBERON:0005408,9.38e-99,2;UBERON:0001899,9.38e-99,2;UBERON:0003296,4.00e-50,4;UBERON:0010133,4.00e-50,4;UBERON:0002784,4.00e-50,4;UBERON:0001894,3.16e-29,7;UBERON:0006222,3.16e-29,7;UBERON:0000970,1.77e-10,21;UBERON:0002104,1.77e-10,21;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000020,2.67e-09,24;UBERON:0001032,2.67e-09,24;UBERON:0004456,2.67e-09,24;UBERON:0003056,4.50e-08,61 | |||
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|short_description=p27@CPEB3 | |||
}} |
Revision as of 15:00, 10 September 2013
Short description: | p27@CPEB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_27_at_CPEB3_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -74bp_to_uc001khu.1_5end |
EntrezGene: | CPEB3 |
HGNC: | 21746 |
UniProt: | Q8NE35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 9.38e-99 | 2 |
regional part of epithalamus | 9.38e-99 | 2 |
secretory circumventricular organ | 9.38e-99 | 2 |
circumventricular organ | 9.38e-99 | 2 |
epithalamus | 9.38e-99 | 2 |
gland of diencephalon | 4.00e-50 | 4 |
neuroendocrine gland | 4.00e-50 | 4 |
regional part of diencephalon | 4.00e-50 | 4 |
diencephalon | 3.16e-29 | 7 |
future diencephalon | 3.16e-29 | 7 |
eye | 1.77e-10 | 21 |
visual system | 1.77e-10 | 21 |
retina | 1.57e-09 | 6 |
photoreceptor array | 1.57e-09 | 6 |
posterior segment of eyeball | 1.57e-09 | 6 |
sense organ | 2.67e-09 | 24 |
sensory system | 2.67e-09 | 24 |
entire sense organ system | 2.67e-09 | 24 |
pre-chordal neural plate | 4.50e-08 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.