FFCP PHASE1:Hg19::chr11:18416103..18416118,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3939|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6535|TSSclassifier=S|UniProt=A8MXQ4,B4DKQ2,E9PH51,F5GZQ4,F5GXC7,F5H6W8,F5H5J4,F5H308,F5GXY2,F5GXU1,F5GWW2,F5H8H6|association_with_transcript=0bp_to_ENST00000396222,ENST00000430553,ENST00000445376,ENST00000469976,ENST00000494573,ENST00000535451,ENST00000536528,ENST00000539814,ENST00000541097,ENST00000541620,ENST00000543445,ENST00000543695,ENST00000545215,ENST00000545467_5end|coexpression_cluster_id=C3123|description=CAGE_peak_1_at_LDHA_5end|id=chr11:18416103..18416118,+|ontology_enrichment_celltype=CL:0000548!2.85e-26!679;CL:0000004!2.85e-26!679;CL:0000255!2.85e-26!679;CL:0000012!4.27e-26!682;CL:0000055!7.25e-23!180;CL:0000144!4.48e-20!625;CL:0002371!3.38e-19!591;CL:0000003!1.74e-14!722;CL:0000057!5.95e-14!75;CL:0000063!4.27e-12!578;CL:0000359!3.83e-10!32;CL:0000220!1.00e-09!246;CL:0002321!2.07e-09!248;CL:0000680!4.26e-09!57;CL:0000056!4.26e-09!57;CL:0000355!4.26e-09!57;CL:0002620!5.77e-09!23;CL:0000723!1.25e-08!436;CL:0000048!2.12e-08!430;CL:0000034!2.25e-08!444;CL:0000187!3.34e-08!54;CL:0000192!5.35e-08!42;CL:0000514!5.35e-08!42;CL:0000393!4.13e-07!60;CL:0000211!4.13e-07!60;CL:0000183!8.88e-07!59|ontology_enrichment_celltype_v019=CL:0000359;1.54e-09;32!CL:0002620;5.76e-09;23|ontology_enrichment_celltype_v019_2=CL:0000057,2.19e-14,76;CL:0000359,3.83e-10,32;CL:0002321,3.16e-09,250;CL:0002620,5.77e-09,23;CL:0000680,1.09e-08,58;CL:0000056,1.09e-08,58;CL:0000355,1.09e-08,58;CL:0000723,5.15e-08,433;CL:0000187,8.18e-08,55;CL:0000048,8.49e-08,427;CL:0000034,9.05e-08,441;CL:0000192,1.50e-07,43;CL:0000514,1.50e-07,43;CL:0000393,8.76e-07,61;CL:0000211,8.76e-07,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!6.90e-12!83;UBERON:0002329!6.90e-12!83;UBERON:0003077!6.90e-12!83;UBERON:0003059!6.90e-12!83;UBERON:0007282!6.90e-12!83;UBERON:0009618!6.90e-12!83;UBERON:0007285!6.90e-12!83;UBERON:0000486!2.02e-11!82;UBERON:0004290!7.86e-11!70;UBERON:0001637!1.16e-10!42;UBERON:0003509!1.16e-10!42;UBERON:0004572!1.16e-10!42;UBERON:0002100!2.22e-10!216;UBERON:0002199!4.37e-10!45;UBERON:0002416!4.37e-10!45;UBERON:0005256!1.82e-09!143;UBERON:0002097!6.30e-09!40;UBERON:0001134!1.40e-08!61;UBERON:0002036!1.40e-08!61;UBERON:0003082!1.40e-08!61;UBERON:0000490!1.85e-08!138;UBERON:0004573!1.86e-08!33;UBERON:0004571!1.86e-08!33;UBERON:0002385!2.12e-08!63;UBERON:0001015!2.12e-08!63;UBERON:0000383!2.12e-08!63;UBERON:0003102!2.31e-08!95;UBERON:0004872!2.55e-07!84;UBERON:0003104!2.62e-07!238;UBERON:0009142!2.62e-07!238;UBERON:0001981!4.18e-07!60;UBERON:0007500!4.18e-07!60;UBERON:0004537!4.18e-07!60;UBERON:0006965!4.18e-07!60;UBERON:0001737!6.84e-07!9|ontology_enrichment_uberon_v019=UBERON:0004573;1.50e-07;33!UBERON:0004571;1.50e-07;33!UBERON:0002097;1.58e-07;41!UBERON:0001637;1.92e-07;42!UBERON:0003509;1.92e-07;42!UBERON:0004572;1.92e-07;42!UBERON:0002199;6.20e-07;46!UBERON:0002416;6.20e-07;46!UBERON:0001737;6.84e-07;9!UBERON:0001557;6.84e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.90e-11,83;UBERON:0001637,1.16e-10,42;UBERON:0003509,1.16e-10,42;UBERON:0004572,1.16e-10,42;UBERON:0002329,2.01e-10,71;UBERON:0003059,2.01e-10,71;UBERON:0007282,2.01e-10,71;UBERON:0004290,2.01e-10,71;UBERON:0009618,2.01e-10,71;UBERON:0002199,2.95e-10,46;UBERON:0002416,2.95e-10,46;UBERON:0000490,4.32e-10,148;UBERON:0007524,4.62e-10,73;UBERON:0003077,6.69e-10,72;UBERON:0007285,6.69e-10,72;UBERON:0002100,7.86e-10,199;UBERON:0003102,2.46e-09,99;UBERON:0002097,4.27e-09,41;UBERON:0007503,9.82e-09,78;UBERON:0004573,1.86e-08,33;UBERON:0004571,1.86e-08,33;UBERON:0005256,3.04e-08,122;UBERON:0001134,3.31e-08,62;UBERON:0002036,3.31e-08,62;UBERON:0003082,3.31e-08,62;UBERON:0002385,4.86e-08,64;UBERON:0001015,4.86e-08,64;UBERON:0000383,4.86e-08,64;UBERON:0004872,5.27e-07,83;UBERON:0001737,6.84e-07,9;UBERON:0003914,8.26e-07,117;UBERON:0007500,9.31e-07,59;UBERON:0001981,9.31e-07,59;UBERON:0004537,9.31e-07,59;UBERON:0006965,9.31e-07,59|phase1_expression=9372.96926494729,4839.74234255567,7125.94989907182,4584.3577975569,3880.51622181771,7417.49447042543,1996.00303996629,3022.77959434739,1227.57245253924,1963.90562052006,753.625261410222,755.588706198266,526.742655522222,932.455703200991,780.109422463514,765.10601666212,723.233433628772,790.195517799138,771.421754887792,864.186706640974,489.193657603719,497.452642985725,534.402587973683,710.241391703196,573.22769238987,2289.72770323736,1764.25956668988,2049.47132384558,424.440054719967,608.753425382179,354.374106270498,1895.84656487555,2123.80293330544,1414.67884289813,1124.90121962656,2157.7024414616,537.28880398277,409.402606905057,361.381094341195,292.9646754664,106.359850263964,134.415871397877,121.060516788068,439.102681114285,315.148537036467,354.172729334212,327.260083963204,248.345404365183,260.772764293677,336.887791409238,242.328028376529,295.366305130843,560.901222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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6535 | |||
|TSSclassifier=S | |||
|UniProt=A8MXQ4,B4DKQ2,E9PH51,F5GZQ4,F5GXC7,F5H6W8,F5H5J4,F5H308,F5GXY2,F5GXU1,F5GWW2,F5H8H6 | |||
|association_with_transcript=0bp_to_ENST00000396222,ENST00000430553,ENST00000445376,ENST00000469976,ENST00000494573,ENST00000535451,ENST00000536528,ENST00000539814,ENST00000541097,ENST00000541620,ENST00000543445,ENST00000543695,ENST00000545215,ENST00000545467_5end | |||
|coexpression_cluster_id=C3123 | |||
|description=CAGE_peak_1_at_LDHA_5end | |||
|id=chr11:18416103..18416118,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.85e-26!679;CL:0000004!2.85e-26!679;CL:0000255!2.85e-26!679;CL:0000012!4.27e-26!682;CL:0000055!7.25e-23!180;CL:0000144!4.48e-20!625;CL:0002371!3.38e-19!591;CL:0000003!1.74e-14!722;CL:0000057!5.95e-14!75;CL:0000063!4.27e-12!578;CL:0000359!3.83e-10!32;CL:0000220!1.00e-09!246;CL:0002321!2.07e-09!248;CL:0000680!4.26e-09!57;CL:0000056!4.26e-09!57;CL:0000355!4.26e-09!57;CL:0002620!5.77e-09!23;CL:0000723!1.25e-08!436;CL:0000048!2.12e-08!430;CL:0000034!2.25e-08!444;CL:0000187!3.34e-08!54;CL:0000192!5.35e-08!42;CL:0000514!5.35e-08!42;CL:0000393!4.13e-07!60;CL:0000211!4.13e-07!60;CL:0000183!8.88e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.54e-09;32!CL:0002620;5.76e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.19e-14,76;CL:0000359,3.83e-10,32;CL:0002321,3.16e-09,250;CL:0002620,5.77e-09,23;CL:0000680,1.09e-08,58;CL:0000056,1.09e-08,58;CL:0000355,1.09e-08,58;CL:0000723,5.15e-08,433;CL:0000187,8.18e-08,55;CL:0000048,8.49e-08,427;CL:0000034,9.05e-08,441;CL:0000192,1.50e-07,43;CL:0000514,1.50e-07,43;CL:0000393,8.76e-07,61;CL:0000211,8.76e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004573;1.50e-07;33!UBERON:0004571;1.50e-07;33!UBERON:0002097;1.58e-07;41!UBERON:0001637;1.92e-07;42!UBERON:0003509;1.92e-07;42!UBERON:0004572;1.92e-07;42!UBERON:0002199;6.20e-07;46!UBERON:0002416;6.20e-07;46!UBERON:0001737;6.84e-07;9!UBERON:0001557;6.84e-07;9 | |||
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| |||
|short_description=p1@LDHA | |||
}} |
Revision as of 17:00, 10 September 2013
Short description: | p1@LDHA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LDHA_5end |
Coexpression cluster: | C3123_basal_Adipocyte_Preadipocyte_Olfactory_serous_mesenchymal_Smooth |
Association with transcript: | 0bp_to_ENST00000396222, ENST00000430553, ENST00000445376, ENST00000469976, ENST00000494573, ENST00000535451, ENST00000536528, ENST00000539814, ENST00000541097, ENST00000541620, ENST00000543445, ENST00000543695, ENST00000545215, ENST00000545467_5end |
EntrezGene: | LDHA |
HGNC: | 6535 |
UniProt: | A8MXQ4B4DKQ2E9PH51F5GZQ4F5GXC7F5H6W8F5H5J4F5H308F5GXY2F5GXU1F5GWW2F5H8H6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.19e-14 | 76 |
vascular associated smooth muscle cell | 3.83e-10 | 32 |
embryonic cell | 3.16e-09 | 250 |
skin fibroblast | 5.77e-09 | 23 |
muscle precursor cell | 1.09e-08 | 58 |
myoblast | 1.09e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.09e-08 | 58 |
somatic stem cell | 5.15e-08 | 433 |
muscle cell | 8.18e-08 | 55 |
multi fate stem cell | 8.49e-08 | 427 |
stem cell | 9.05e-08 | 441 |
smooth muscle cell | 1.50e-07 | 43 |
smooth muscle myoblast | 1.50e-07 | 43 |
electrically responsive cell | 8.76e-07 | 61 |
electrically active cell | 8.76e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.90e-11 | 83 |
artery | 1.16e-10 | 42 |
arterial blood vessel | 1.16e-10 | 42 |
arterial system | 1.16e-10 | 42 |
somite | 2.01e-10 | 71 |
presomitic mesoderm | 2.01e-10 | 71 |
presumptive segmental plate | 2.01e-10 | 71 |
dermomyotome | 2.01e-10 | 71 |
trunk paraxial mesoderm | 2.01e-10 | 71 |
integument | 2.95e-10 | 46 |
integumental system | 2.95e-10 | 46 |
unilaminar epithelium | 4.32e-10 | 148 |
dense mesenchyme tissue | 4.62e-10 | 73 |
paraxial mesoderm | 6.69e-10 | 72 |
presumptive paraxial mesoderm | 6.69e-10 | 72 |
trunk | 7.86e-10 | 199 |
surface structure | 2.46e-09 | 99 |
skin of body | 4.27e-09 | 41 |
epithelial vesicle | 9.82e-09 | 78 |
systemic artery | 1.86e-08 | 33 |
systemic arterial system | 1.86e-08 | 33 |
trunk mesenchyme | 3.04e-08 | 122 |
skeletal muscle tissue | 3.31e-08 | 62 |
striated muscle tissue | 3.31e-08 | 62 |
myotome | 3.31e-08 | 62 |
muscle tissue | 4.86e-08 | 64 |
musculature | 4.86e-08 | 64 |
musculature of body | 4.86e-08 | 64 |
splanchnic layer of lateral plate mesoderm | 5.27e-07 | 83 |
larynx | 6.84e-07 | 9 |
epithelial tube | 8.26e-07 | 117 |
epithelial tube open at both ends | 9.31e-07 | 59 |
blood vessel | 9.31e-07 | 59 |
blood vasculature | 9.31e-07 | 59 |
vascular cord | 9.31e-07 | 59 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.