FFCP PHASE1:Hg19::chr12:6345371..6345421,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2228|description=CAGE_peak_at_chr12:6345371..6345421,+|id=chr12:6345371..6345421,+|ontology_enrichment_celltype=CL:0000066!9.19e-22!254;CL:0002078!6.20e-12!44;CL:0002139!1.09e-11!24;CL:0000115!4.76e-11!35;CL:0000071!2.11e-09!18;CL:0002546!2.11e-09!18;CL:0000213!3.59e-08!57;CL:0000215!3.59e-08!57;CL:0000076!1.83e-07!62;CL:0002321!2.89e-07!248;CL:0000220!5.12e-07!246|ontology_enrichment_celltype_v019=CL:0002139;1.75e-15;24!CL:0000115;2.56e-13;36!CL:0002078;1.64e-11;45!CL:0000071;3.34e-11;18!CL:0000213;2.75e-07;58!CL:0000215;2.75e-07;58!CL:1000413;4.64e-07;9!CL:0002681;5.28e-07;12!CL:0002584;5.28e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,9.36e-20,253;CL:0002078,6.11e-16,45;CL:0000115,1.51e-15,36;CL:0002139,2.80e-15,24;CL:0000071,1.89e-11,18;CL:0002546,1.89e-11,18;CL:0000213,2.96e-11,58;CL:0000215,2.96e-11,58;CL:0000076,2.73e-08,63;CL:1000413,1.58e-07,9;CL:0002681,8.70e-07,12;CL:0002584,8.70e-07,12|ontology_enrichment_development_v019=CL:0002546;3.34e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!1.24e-15!659;UBERON:0000922!8.84e-14!612;UBERON:0000467!1.94e-13!625;UBERON:0000480!1.96e-13!626;UBERON:0002050!6.06e-12!605;UBERON:0005423!6.06e-12!605;UBERON:0000923!1.10e-11!604;UBERON:0005291!1.10e-11!604;UBERON:0006598!1.10e-11!604;UBERON:0002532!1.10e-11!604;UBERON:0000062!1.43e-09!511;UBERON:0000464!1.96e-09!104;UBERON:0001986!2.11e-09!18;UBERON:0004638!2.11e-09!18;UBERON:0004852!2.11e-09!18;UBERON:0001004!3.53e-09!72;UBERON:0000926!4.68e-09!448;UBERON:0004120!4.68e-09!448;UBERON:0006603!4.68e-09!448;UBERON:0000487!6.87e-09!22;UBERON:0004119!1.90e-08!169;UBERON:0000925!1.90e-08!169;UBERON:0006595!1.90e-08!169;UBERON:0000477!5.54e-08!286;UBERON:0006914!8.15e-08!25;UBERON:0001007!2.12e-07!155;UBERON:0001555!2.12e-07!155;UBERON:0007026!2.12e-07!155;UBERON:0002553!2.12e-07!70;UBERON:0004111!3.60e-07!241;UBERON:0000055!8.66e-07!69|ontology_enrichment_uberon_v019=UBERON:0004638;3.34e-11;18!UBERON:0001986;3.34e-11;18!UBERON:0004852;3.34e-11;18!UBERON:0000487;1.75e-09;22!UBERON:0006914;3.93e-09;25!UBERON:0003915;4.64e-07;9!UBERON:0004700;4.64e-07;9!UBERON:0001917;4.64e-07;9!UBERON:0001225;5.28e-07;12!UBERON:0008987;5.28e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.89e-11,18;UBERON:0001986,1.89e-11,18;UBERON:0004852,1.89e-11,18;UBERON:0000487,1.26e-09,22;UBERON:0006914,2.90e-09,25;UBERON:0003915,1.58e-07,9;UBERON:0004700,1.58e-07,9;UBERON:0001917,1.58e-07,9;UBERON:0001225,8.70e-07,12;UBERON:0008987,8.70e-07,12|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0,0.737201809504527,2.09340350391728,0.655324116390517,1.05506791291381,1.73272894144065,1.98838425436749,0.672325146451775,0.602694528023977,2.19093027116212,1.46379839637152,0.984968464614303,0.408001382488506,0.313454721478088,0,0.136874425072884,0.627713197974014,0,0.246301768349837,0,0.393364276848904,0,0,0,0.6024118375565,1.10926203050036,0.0774672005803016,0,0,0,0,0,0,1.29557466407592,0.257575567634187,0.436194716338694,3.02300754951048,0.242584061187816,0.464858073811369,1.23350366406548,0.619412741790207,0,0,0,0.344745680736619,3.22742341791913,1.35426486594342,0.188242339542605,1.09162460023138,0.674170453335254,0,0.320929027076094,0,0,0.398927315243264,0.852449501065388,0,1.13477044938228,0,0.502497330513487,1.0429658368404,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,1.59331170856906,0,1.94653948121054,0.189069634328136,0.221729397462564,0.263504357079378,0.196468613246569,1.82147644146271,2.59549109949101,0.97364218096405,0.696518949197069,1.06366368415092,0,0,0,1.59009925893364,3.4409383804245,1.73570250803797,1.69592382577203,0.838998872419812,2.47606237746061,4.59788926380983,1.55050055501597,1.06729878806013,1.00416183829401,3.22263453687318,2.28081631715554,3.66093086322254,1.47065232138347,6.48113558305408,0.625098097988558,0.673588117878509,1.0135033243499,1.53316637465883,2.84779697870439,3.11442964681692,0,0,1.3082821564276,0.496971951695318,0.759783069987479,0.264818361626438,0.573673241497627,0.709336764396714,0,0,0,0,0.67355336034844,0.326923806226917,0,0,0,0,0.570471821544449,1.04614076386261,0.23486899728753,0,0,1.42907919878425,0.491337269247072,0.516628905878827,0,0.494533858557114,0,0,0.673344455816265,0.500474079487857,1.10825646193673,0.438977620880838,0.30648779579902,0.45071417671979,0.907457465280168,0,0,0.211931901159562,0.300091096084402,0.412210116953756,0,0,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.484938170456436,0,0,0.169560592310488,1.54608682530637,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2228 | |||
|description=CAGE_peak_at_chr12:6345371..6345421,+ | |||
|id=chr12:6345371..6345421,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.19e-22!254;CL:0002078!6.20e-12!44;CL:0002139!1.09e-11!24;CL:0000115!4.76e-11!35;CL:0000071!2.11e-09!18;CL:0002546!2.11e-09!18;CL:0000213!3.59e-08!57;CL:0000215!3.59e-08!57;CL:0000076!1.83e-07!62;CL:0002321!2.89e-07!248;CL:0000220!5.12e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.75e-15;24!CL:0000115;2.56e-13;36!CL:0002078;1.64e-11;45!CL:0000071;3.34e-11;18!CL:0000213;2.75e-07;58!CL:0000215;2.75e-07;58!CL:1000413;4.64e-07;9!CL:0002681;5.28e-07;12!CL:0002584;5.28e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.36e-20,253;CL:0002078,6.11e-16,45;CL:0000115,1.51e-15,36;CL:0002139,2.80e-15,24;CL:0000071,1.89e-11,18;CL:0002546,1.89e-11,18;CL:0000213,2.96e-11,58;CL:0000215,2.96e-11,58;CL:0000076,2.73e-08,63;CL:1000413,1.58e-07,9;CL:0002681,8.70e-07,12;CL:0002584,8.70e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;3.34e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.24e-15!659;UBERON:0000922!8.84e-14!612;UBERON:0000467!1.94e-13!625;UBERON:0000480!1.96e-13!626;UBERON:0002050!6.06e-12!605;UBERON:0005423!6.06e-12!605;UBERON:0000923!1.10e-11!604;UBERON:0005291!1.10e-11!604;UBERON:0006598!1.10e-11!604;UBERON:0002532!1.10e-11!604;UBERON:0000062!1.43e-09!511;UBERON:0000464!1.96e-09!104;UBERON:0001986!2.11e-09!18;UBERON:0004638!2.11e-09!18;UBERON:0004852!2.11e-09!18;UBERON:0001004!3.53e-09!72;UBERON:0000926!4.68e-09!448;UBERON:0004120!4.68e-09!448;UBERON:0006603!4.68e-09!448;UBERON:0000487!6.87e-09!22;UBERON:0004119!1.90e-08!169;UBERON:0000925!1.90e-08!169;UBERON:0006595!1.90e-08!169;UBERON:0000477!5.54e-08!286;UBERON:0006914!8.15e-08!25;UBERON:0001007!2.12e-07!155;UBERON:0001555!2.12e-07!155;UBERON:0007026!2.12e-07!155;UBERON:0002553!2.12e-07!70;UBERON:0004111!3.60e-07!241;UBERON:0000055!8.66e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.34e-11;18!UBERON:0001986;3.34e-11;18!UBERON:0004852;3.34e-11;18!UBERON:0000487;1.75e-09;22!UBERON:0006914;3.93e-09;25!UBERON:0003915;4.64e-07;9!UBERON:0004700;4.64e-07;9!UBERON:0001917;4.64e-07;9!UBERON:0001225;5.28e-07;12!UBERON:0008987;5.28e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.89e-11,18;UBERON:0001986,1.89e-11,18;UBERON:0004852,1.89e-11,18;UBERON:0000487,1.26e-09,22;UBERON:0006914,2.90e-09,25;UBERON:0003915,1.58e-07,9;UBERON:0004700,1.58e-07,9;UBERON:0001917,1.58e-07,9;UBERON:0001225,8.70e-07,12;UBERON:0008987,8.70e-07,12 | |||
|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0,0.737201809504527,2.09340350391728,0.655324116390517,1.05506791291381,1.73272894144065,1.98838425436749,0.672325146451775,0.602694528023977,2.19093027116212,1.46379839637152,0.984968464614303,0.408001382488506,0.313454721478088,0,0.136874425072884,0.627713197974014,0,0.246301768349837,0,0.393364276848904,0,0,0,0.6024118375565,1.10926203050036,0.0774672005803016,0,0,0,0,0,0,1.29557466407592,0.257575567634187,0.436194716338694,3.02300754951048,0.242584061187816,0.464858073811369,1.23350366406548,0.619412741790207,0,0,0,0.344745680736619,3.22742341791913,1.35426486594342,0.188242339542605,1.09162460023138,0.674170453335254,0,0.320929027076094,0,0,0.398927315243264,0.852449501065388,0,1.13477044938228,0,0.502497330513487,1.0429658368404,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,1.59331170856906,0,1.94653948121054,0.189069634328136,0.221729397462564,0.263504357079378,0.196468613246569,1.82147644146271,2.59549109949101,0.97364218096405,0.696518949197069,1.06366368415092,0,0,0,1.59009925893364,3.4409383804245,1.73570250803797,1.69592382577203,0.838998872419812,2.47606237746061,4.59788926380983,1.55050055501597,1.06729878806013,1.00416183829401,3.22263453687318,2.28081631715554,3.66093086322254,1.47065232138347,6.48113558305408,0.625098097988558,0.673588117878509,1.0135033243499,1.53316637465883,2.84779697870439,3.11442964681692,0,0,1.3082821564276,0.496971951695318,0.759783069987479,0.264818361626438,0.573673241497627,0.709336764396714,0,0,0,0,0.67355336034844,0.326923806226917,0,0,0,0,0.570471821544449,1.04614076386261,0.23486899728753,0,0,1.42907919878425,0.491337269247072,0.516628905878827,0,0.494533858557114,0,0,0.673344455816265,0.500474079487857,1.10825646193673,0.438977620880838,0.30648779579902,0.45071417671979,0.907457465280168,0,0,0.211931901159562,0.300091096084402,0.412210116953756,0,0,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.484938170456436,0,0,0.169560592310488,1.54608682530637,0.545492241181669,1.14721838155602,1.09776335516636,0.662648841607426,1.97529702878181,0.725627385107593,1.7662459561294,0,0,1.28648187638577,0,0,0,0.828147600278907,1.51726221070292,1.44606617930089,0.772057809126758,0.435758888184812,1.18635309555548,1.21348177344148,1.76599318612811,1.92373578473195,3.69077727312324,0,0,4.41026134156626,0,0,0.590789906681404,0,0.368965315629341,0.171567810298526,1.31700342490351,0,2.41269533787914,0.648119116109707,0,1.03993478527958,0,0.34779121492523,0,1.15493158208859,3.70388410061289,2.66355813128438,1.58040879591855,0.858486162094873,0.492434012174795,2.57404691653161,1.93220510975347,1.87467667973554,0.839910640994298,0.992425680696705,0.806026704325635,1.16253575405585,1.53353071666084,2.46331618947972,0.704387472105808,0.829312462163088,0.432359860250884,0.25248486685276,0.63497894292169,0,0,0,1.33675740514321,2.40274446275134,0.571652865261156,0,0,0.22001485746285,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0.791951872933429,1.50719688529793,0,1.19967589418468,15.8110914833548,5.52482800575339,35.8417697121154,0,1.14861935834114,0,0.579125226670317,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0.414415513436035,0.858840442033979,2.00068208423871,0.813795071099207,1.66376689224646,2.85486382075459,1.10391690523754,1.28855556491985,0,0,0,0,0.184369168541703,0.695068915744663,0.587403472388222,0,0,0,0,0.606255142892519,0,0,0.248107807818777,0,0,0.256278298511402,0,0.804269605718038,0,0.308419387605311,0.355123450626254,0.246381468041427,0.519254429183621,0.232420756919918,0.120859449591622,1.80455823272956,1.74953878978203,0.574072240823034,0.364182336013434,0.917870904715969,3.60959690325929,1.00119938235739,0,1.46139224653261,0.422206515571503,3.4120015221269,7.14393562161366,0.863663664408557,1.54227252690289,0.812839312631559,2.00675909541941,3.82314409567557,4.98645605357235,0.895499018888713,0,0,1.02580050046556,0.328014645699706,0,0.309123034943167,0.183138929636687,0.082509499920588,0,1.30012049207304,0,0,0,0.307007349452259,0,0,0.145016693914229,0.170453254832202,0.0890320356467374,0.330569830721956,2.69066094311149,0.765676274967505,2.32662895967765,0,0.62962469366128,0,1.54016790088044,0,0.869932992075073,0,0.429374660225974,0,0.316379424718726,0,0.255897791311334,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.606547444719948,3.17020642346017,0,0,0.243713489631284,0,0.136499911407986,0,1.13008116620243,0.551365343546124,0,2.63070531152258,1.73632660280006,1.31178950409327,0.608731130888112,0,0.563391205064483,0.143411352204052,0,0.35667105148125,1.06428319221179,3.37772216476263,0,0.379473173765715,0,0.384888450902048,1.34060455107157,1.08890984861323,0.0941438007767792,0.43050537267123,3.36942951335251,1.7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| |||
|short_description=p@chr12:6345371..6345421,+ | |||
}} |
Revision as of 23:51, 10 September 2013
Short description: | p@chr12:6345371..6345421, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:6345371..6345421, + |
Coexpression cluster: | C2228_Monocytederived_seminal_leiomyoma_Renal_Wilms_Endothelial_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.36e-20 | 253 |
meso-epithelial cell | 6.11e-16 | 45 |
endothelial cell | 1.51e-15 | 36 |
endothelial cell of vascular tree | 2.80e-15 | 24 |
blood vessel endothelial cell | 1.89e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.89e-11 | 18 |
lining cell | 2.96e-11 | 58 |
barrier cell | 2.96e-11 | 58 |
squamous epithelial cell | 2.73e-08 | 63 |
endothelial cell of artery | 1.58e-07 | 9 |
kidney cortical cell | 8.70e-07 | 12 |
renal cortical epithelial cell | 8.70e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.89e-11 | 18 |
endothelium | 1.89e-11 | 18 |
cardiovascular system endothelium | 1.89e-11 | 18 |
simple squamous epithelium | 1.26e-09 | 22 |
squamous epithelium | 2.90e-09 | 25 |
endothelial tube | 1.58e-07 | 9 |
arterial system endothelium | 1.58e-07 | 9 |
endothelium of artery | 1.58e-07 | 9 |
cortex of kidney | 8.70e-07 | 12 |
renal parenchyma | 8.70e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.