FFCP PHASE1:Hg19::chr12:66218051..66218069,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:66218051..66218069,-|id=chr12:66218051..66218069,-|ontology_enrichment_celltype=CL:0002321!4.11e-12!248;CL:0000220!2.37e-11!246;CL:0000055!2.44e-11!180;CL:0000548!3.22e-11!679;CL:0000004!3.22e-11!679;CL:0000255!3.22e-11!679;CL:0000012!6.01e-11!682;CL:0002371!1.47e-09!591;CL:0002368!5.62e-08!13;CL:0000144!5.84e-08!625;CL:0000066!1.31e-07!254;CL:0000003!1.39e-07!722;CL:0002076!1.94e-07!43|ontology_enrichment_celltype_v019=CL:0000307;1.48e-22;3!CL:0002202;1.07e-20;9!CL:0002632;1.07e-20;9!CL:0002368;1.91e-20;13!CL:0002328;2.41e-11;3!CL:0002336;1.13e-08;1!CL:0002261;1.13e-08;1!CL:0002170;1.13e-08;1!CL:0002076;7.29e-08;42|ontology_enrichment_celltype_v019_2=CL:0000068,2.89e-22,3;CL:0000069,2.89e-22,3;CL:0000307,2.89e-22,3;CL:0000377,2.89e-22,3;CL:0002202,1.50e-20,9;CL:0002632,1.50e-20,9;CL:0002368,2.56e-20,13;CL:0002328,2.29e-11,3;CL:0002076,2.87e-10,42;CL:0002336,2.22e-08,1;CL:0002261,2.22e-08,1;CL:0002170,2.22e-08,1;CL:0000223,3.91e-07,58;CL:0002321,4.28e-07,250|ontology_enrichment_development_v019=CL:0000377;1.48e-22;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000486!3.28e-10!82;UBERON:0005256!4.42e-10!143;UBERON:0002100!5.37e-09!216;UBERON:0000475!1.70e-08!365;UBERON:0003104!2.96e-08!238;UBERON:0009142!2.96e-08!238;UBERON:0000119!7.56e-08!312;UBERON:0000914!8.04e-08!83;UBERON:0002329!8.04e-08!83;UBERON:0003077!8.04e-08!83;UBERON:0003059!8.04e-08!83;UBERON:0007282!8.04e-08!83;UBERON:0009618!8.04e-08!83;UBERON:0007285!8.04e-08!83;UBERON:0000481!2.94e-07!347;UBERON:0003102!5.67e-07!95;UBERON:0000483!6.20e-07!309|ontology_enrichment_uberon_v019=UBERON:0007196;2.31e-12;15!UBERON:0001558;2.31e-12;15!UBERON:0004815;2.41e-11;3!UBERON:0002031;2.41e-11;3!UBERON:0003126;5.39e-10;7!UBERON:0001005;5.39e-10;7!UBERON:0000964;1.68e-08;4!UBERON:0010409;1.68e-08;4!UBERON:0002185;3.88e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0007196,2.80e-12,15;UBERON:0001558,2.80e-12,15;UBERON:0004815,2.29e-11,3;UBERON:0002031,2.29e-11,3;UBERON:0003126,7.14e-10,7;UBERON:0001005,7.14e-10,7;UBERON:0000964,2.23e-08,4;UBERON:0010409,2.23e-08,4;UBERON:0004348,2.23e-08,4;UBERON:0005427,2.23e-08,4;UBERON:0005085,2.86e-08,31;UBERON:0002185,3.77e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0.408001382488506,0,0,0.273748850145768,0.251085279189606,0.152826811495903,0,0.157421562627358,0,0,0,4.59710612239464,2.71085326900425,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,1.10864698731282,0.351339142772504,0,3.27865759463288,0,0,0,0,0,0,0,0.198762407366705,0,0,1.13061588384802,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0.337834441449967,1.53316637465883,0,0,0,0,0.436094052142534,0,0.12663051166458,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0.312160076830321,1.1409436430889,0.149448680551801,0,0.809364721840658,0.561803226808994,0,0.61417158655884,0,0,0,0,0,0.505008341862199,1.37630371859161,0.554128230968366,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0.169560592310488,1.73934767846967,0.272746120590835,0.573609190778008,0.487894824518382,0.265059536642971,0.348581828608555,0.621966330092223,0.756962552626885,0.36497735907583,0,0,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0.245976877086227,0,1.20725313949488,0,0.502644862058154,1.01847289674383,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.850650583454319,0,0,2.68367875415648,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.672786506072164,0.87192013766656,0.22001485746285,0,0,0,0.26593811658487,1.04007436911366,0.771622122786426,1.41849132023278,1.3321108950805,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,1.43833425785268,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,0,0,0.553107505625109,0.260650843404249,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.164254312027618,0,0.348631135379878,0.483437798366489,0.200506470303285,0,0,0.364182336013434,0,0.902399225814824,0.385076685522074,1.56869953835371,0,0.211103257785751,0,0.510281115829547,0,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0.462145851343933,0.15350367472613,0.827019434907183,0.322260734604821,0.435050081742686,1.10794615640931,0,0.165284915360978,0.192190067365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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:66218051..66218069,- | |||
|id=chr12:66218051..66218069,- | |||
|ontology_enrichment_celltype=CL:0002321!4.11e-12!248;CL:0000220!2.37e-11!246;CL:0000055!2.44e-11!180;CL:0000548!3.22e-11!679;CL:0000004!3.22e-11!679;CL:0000255!3.22e-11!679;CL:0000012!6.01e-11!682;CL:0002371!1.47e-09!591;CL:0002368!5.62e-08!13;CL:0000144!5.84e-08!625;CL:0000066!1.31e-07!254;CL:0000003!1.39e-07!722;CL:0002076!1.94e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.48e-22;3!CL:0002202;1.07e-20;9!CL:0002632;1.07e-20;9!CL:0002368;1.91e-20;13!CL:0002328;2.41e-11;3!CL:0002336;1.13e-08;1!CL:0002261;1.13e-08;1!CL:0002170;1.13e-08;1!CL:0002076;7.29e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,2.89e-22,3;CL:0000069,2.89e-22,3;CL:0000307,2.89e-22,3;CL:0000377,2.89e-22,3;CL:0002202,1.50e-20,9;CL:0002632,1.50e-20,9;CL:0002368,2.56e-20,13;CL:0002328,2.29e-11,3;CL:0002076,2.87e-10,42;CL:0002336,2.22e-08,1;CL:0002261,2.22e-08,1;CL:0002170,2.22e-08,1;CL:0000223,3.91e-07,58;CL:0002321,4.28e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000377;1.48e-22;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.28e-10!82;UBERON:0005256!4.42e-10!143;UBERON:0002100!5.37e-09!216;UBERON:0000475!1.70e-08!365;UBERON:0003104!2.96e-08!238;UBERON:0009142!2.96e-08!238;UBERON:0000119!7.56e-08!312;UBERON:0000914!8.04e-08!83;UBERON:0002329!8.04e-08!83;UBERON:0003077!8.04e-08!83;UBERON:0003059!8.04e-08!83;UBERON:0007282!8.04e-08!83;UBERON:0009618!8.04e-08!83;UBERON:0007285!8.04e-08!83;UBERON:0000481!2.94e-07!347;UBERON:0003102!5.67e-07!95;UBERON:0000483!6.20e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;2.31e-12;15!UBERON:0001558;2.31e-12;15!UBERON:0004815;2.41e-11;3!UBERON:0002031;2.41e-11;3!UBERON:0003126;5.39e-10;7!UBERON:0001005;5.39e-10;7!UBERON:0000964;1.68e-08;4!UBERON:0010409;1.68e-08;4!UBERON:0002185;3.88e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,2.80e-12,15;UBERON:0001558,2.80e-12,15;UBERON:0004815,2.29e-11,3;UBERON:0002031,2.29e-11,3;UBERON:0003126,7.14e-10,7;UBERON:0001005,7.14e-10,7;UBERON:0000964,2.23e-08,4;UBERON:0010409,2.23e-08,4;UBERON:0004348,2.23e-08,4;UBERON:0005427,2.23e-08,4;UBERON:0005085,2.86e-08,31;UBERON:0002185,3.77e-07,5 | |||
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|short_description=p@chr12:66218051..66218069,- | |||
}} |
Revision as of 23:59, 10 September 2013
Short description: | p@chr12:66218051..66218069, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:66218051..66218069, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 2.89e-22 | 3 |
branched duct epithelial cell | 2.89e-22 | 3 |
tracheal epithelial cell | 2.89e-22 | 3 |
tracheoblast | 2.89e-22 | 3 |
epithelial cell of tracheobronchial tree | 1.50e-20 | 9 |
epithelial cell of lower respiratory tract | 1.50e-20 | 9 |
respiratory epithelial cell | 2.56e-20 | 13 |
bronchial epithelial cell | 2.29e-11 | 3 |
endo-epithelial cell | 2.87e-10 | 42 |
buccal mucosa cell | 2.22e-08 | 1 |
endothelial cell of viscerocranial mucosa | 2.22e-08 | 1 |
keratinized cell of the oral mucosa | 2.22e-08 | 1 |
endodermal cell | 3.91e-07 | 58 |
embryonic cell | 4.28e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 2.80e-12 | 15 |
lower respiratory tract | 2.80e-12 | 15 |
lower respiratory tract epithelium | 2.29e-11 | 3 |
epithelium of bronchus | 2.29e-11 | 3 |
trachea | 7.14e-10 | 7 |
respiratory airway | 7.14e-10 | 7 |
cornea | 2.23e-08 | 4 |
eye surface | 2.23e-08 | 4 |
optic eminence | 2.23e-08 | 4 |
corneal primordium | 2.23e-08 | 4 |
ectodermal placode | 2.86e-08 | 31 |
bronchus | 3.77e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.