FFCP PHASE1:Hg19::chr16:30484054..30484084,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3683|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6148|TSSclassifier=S|UniProt=B4E021,B4DQ77|association_with_transcript=0bp_to_ENST00000433423,ENST00000454514_5end|coexpression_cluster_id=C2369|description=CAGE_peak_1_at_ITGAL_5end|id=chr16:30484054..30484084,+|ontology_enrichment_celltype=CL:0000037!7.37e-76!172;CL:0000566!7.37e-76!172;CL:0000738!4.92e-71!140;CL:0000988!6.37e-71!182;CL:0002032!1.62e-70!165;CL:0000837!1.62e-70!165;CL:0002087!1.31e-62!119;CL:0002031!3.27e-60!124;CL:0000763!3.22e-39!112;CL:0000049!3.22e-39!112;CL:0000766!2.97e-37!76;CL:0000839!1.94e-31!70;CL:0000557!7.12e-31!71;CL:0002194!1.89e-30!63;CL:0000576!1.89e-30!63;CL:0000040!1.89e-30!63;CL:0000559!1.89e-30!63;CL:0002057!1.11e-29!42;CL:0002009!1.16e-29!65;CL:0000542!1.76e-27!53;CL:0000051!1.76e-27!53;CL:0000838!2.28e-27!52;CL:0000860!2.48e-26!45;CL:0000084!4.88e-17!25;CL:0000827!4.88e-17!25;CL:0000791!1.18e-14!18;CL:0000789!1.18e-14!18;CL:0002420!1.18e-14!18;CL:0002419!1.18e-14!18;CL:0000790!1.18e-14!18;CL:0000134!7.50e-12!358;CL:0002320!9.16e-11!365;CL:0000625!2.31e-10!11;CL:0000945!1.84e-09!24;CL:0000826!1.84e-09!24;CL:0002393!4.63e-09!9;CL:0002397!4.63e-09!9;CL:0000094!1.08e-07!8;CL:0000219!3.38e-07!390|ontology_enrichment_celltype_v019=CL:0000576;1.65e-23;48!CL:0000860;1.73e-23;33!CL:0002057;1.73e-23;33!CL:0000473;1.34e-22;39!CL:0000234;1.34e-22;39!CL:0002087;2.92e-20;104!CL:0000766;2.54e-19;69!CL:0000084;1.41e-18;25!CL:0000542;4.12e-17;53!CL:0000791;5.88e-17;18!CL:0000789;5.88e-17;18!CL:0002419;5.88e-17;18!CL:0000738;9.32e-17;136!CL:0000763;1.85e-13;100!CL:0000988;7.43e-13;177!CL:0000625;6.55e-12;11!CL:0000945;6.77e-11;24!CL:0000094;8.69e-09;8!CL:0002393;2.91e-07;6!CL:0002397;2.91e-07;6!CL:0000219;6.29e-07;193|ontology_enrichment_celltype_v019_2=CL:0000037,1.12e-84,168;CL:0000738,8.83e-81,136;CL:0000988,9.68e-79,177;CL:0002032,1.78e-78,161;CL:0000837,1.78e-78,161;CL:0002087,4.05e-76,115;CL:0002031,2.70e-70,120;CL:0000766,2.22e-45,72;CL:0000763,5.65e-44,108;CL:0000049,5.65e-44,108;CL:0002194,2.32e-40,59;CL:0000576,2.32e-40,59;CL:0000040,2.32e-40,59;CL:0000559,2.32e-40,59;CL:0000839,2.28e-38,66;CL:0002009,2.74e-38,61;CL:0000473,5.82e-38,48;CL:0000234,5.82e-38,48;CL:0000557,9.14e-37,67;CL:0000860,1.13e-34,42;CL:0002057,1.13e-34,42;CL:0000838,5.92e-31,52;CL:0000542,5.27e-30,53;CL:0000051,5.27e-30,53;CL:0000084,1.51e-18,25;CL:0000827,1.51e-18,25;CL:0000134,1.77e-17,354;CL:0000791,5.78e-17,18;CL:0000789,5.78e-17,18;CL:0002420,5.78e-17,18;CL:0002419,5.78e-17,18;CL:0000790,5.78e-17,18;CL:0002320,2.65e-16,361;CL:0000219,2.71e-12,386;CL:0000625,6.47e-12,11;CL:0000945,5.78e-11,24;CL:0000826,5.78e-11,24;CL:0002393,2.19e-10,9;CL:0002397,2.19e-10,9;CL:0000094,8.88e-09,8;CL:0000048,4.51e-08,427;CL:0000034,1.10e-07,441;CL:0000723,1.76e-07,433|ontology_enrichment_development_v019=CL:0002057;6.06e-25;42!CL:0000051;4.12e-17;53!CL:0000790;5.88e-17;18!CL:0000049;8.27e-13;108|ontology_enrichment_disease=DOID:2531!6.76e-10!51;DOID:0060083!6.76e-10!51;DOID:1240!2.63e-07!39|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:2531,1.93e-09,51;DOID:0060083,1.93e-09,51;DOID:1240,6.01e-07,39|ontology_enrichment_uberon=UBERON:0002390!3.71e-40!102;UBERON:0003061!3.71e-40!102;UBERON:0002193!1.26e-35!112;UBERON:0002371!1.31e-26!80;UBERON:0001474!7.08e-23!86;UBERON:0002405!9.05e-23!115;UBERON:0007023!1.96e-18!115;UBERON:0004765!5.47e-17!101;UBERON:0001434!5.47e-17!101;UBERON:0000178!2.02e-10!15;UBERON:0000179!2.02e-10!15;UBERON:0000463!2.02e-10!15;UBERON:0002384!1.16e-09!375;UBERON:0003081!9.58e-08!216|ontology_enrichment_uberon_v019=UBERON:0000178;5.37e-10;15!UBERON:0000179;5.37e-10;15!UBERON:0000463;5.37e-10;15!UBERON:0002390;6.60e-08;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.49e-46,98;UBERON:0003061,1.49e-46,98;UBERON:0002193,5.86e-42,108;UBERON:0002405,8.25e-33,93;UBERON:0002371,3.37e-32,76;UBERON:0001474,3.96e-28,82;UBERON:0004765,1.32e-23,90;UBERON:0001434,2.08e-20,100;UBERON:0002384,3.80e-15,371;UBERON:0003081,3.17e-12,203;UBERON:0000178,5.73e-10,15;UBERON:0000179,5.73e-10,15;UBERON:0000463,5.73e-10,15;UBERON:0007023,7.23e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8807369450206,17.3232243739386,18.9692982965967,103.454804811262,159.289200210343,98.3082383057083,0,0,0,3.17615522379237,1.9903692548239,10.8632162553893,63.7094719811659,113.90924616304,68.3584242754933,6.49354875295781,13.9274276388161,8.49999373192816,33.4415949192999,37.4097184251921,39.2986179124262,43.464229901363,41.9391245782262,43.9783046671047,46.0307827715441,47.1335700013545,38.0736390120622,47.2301582609167,45.1839278508678,62.2961838333972,35.9542868526375,24.5615535052061,20.8992840533929,33.6692281607993,27.9208253556201,37.0815532963444,42.5508177240864,44.8793229648672,42.1962503027367,25.5384129993154,22.1280237629545,18.6846674698673,45.2247597462138,47.4549455762383,45.6096573880745,25.4267791106015,29.4622108790052,25.9499157701525,99.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3683 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6148 | |||
|TSSclassifier=S | |||
|UniProt=B4E021,B4DQ77 | |||
|association_with_transcript=0bp_to_ENST00000433423,ENST00000454514_5end | |||
|coexpression_cluster_id=C2369 | |||
|description=CAGE_peak_1_at_ITGAL_5end | |||
|id=chr16:30484054..30484084,+ | |||
|ontology_enrichment_celltype=CL:0000037!7.37e-76!172;CL:0000566!7.37e-76!172;CL:0000738!4.92e-71!140;CL:0000988!6.37e-71!182;CL:0002032!1.62e-70!165;CL:0000837!1.62e-70!165;CL:0002087!1.31e-62!119;CL:0002031!3.27e-60!124;CL:0000763!3.22e-39!112;CL:0000049!3.22e-39!112;CL:0000766!2.97e-37!76;CL:0000839!1.94e-31!70;CL:0000557!7.12e-31!71;CL:0002194!1.89e-30!63;CL:0000576!1.89e-30!63;CL:0000040!1.89e-30!63;CL:0000559!1.89e-30!63;CL:0002057!1.11e-29!42;CL:0002009!1.16e-29!65;CL:0000542!1.76e-27!53;CL:0000051!1.76e-27!53;CL:0000838!2.28e-27!52;CL:0000860!2.48e-26!45;CL:0000084!4.88e-17!25;CL:0000827!4.88e-17!25;CL:0000791!1.18e-14!18;CL:0000789!1.18e-14!18;CL:0002420!1.18e-14!18;CL:0002419!1.18e-14!18;CL:0000790!1.18e-14!18;CL:0000134!7.50e-12!358;CL:0002320!9.16e-11!365;CL:0000625!2.31e-10!11;CL:0000945!1.84e-09!24;CL:0000826!1.84e-09!24;CL:0002393!4.63e-09!9;CL:0002397!4.63e-09!9;CL:0000094!1.08e-07!8;CL:0000219!3.38e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.65e-23;48!CL:0000860;1.73e-23;33!CL:0002057;1.73e-23;33!CL:0000473;1.34e-22;39!CL:0000234;1.34e-22;39!CL:0002087;2.92e-20;104!CL:0000766;2.54e-19;69!CL:0000084;1.41e-18;25!CL:0000542;4.12e-17;53!CL:0000791;5.88e-17;18!CL:0000789;5.88e-17;18!CL:0002419;5.88e-17;18!CL:0000738;9.32e-17;136!CL:0000763;1.85e-13;100!CL:0000988;7.43e-13;177!CL:0000625;6.55e-12;11!CL:0000945;6.77e-11;24!CL:0000094;8.69e-09;8!CL:0002393;2.91e-07;6!CL:0002397;2.91e-07;6!CL:0000219;6.29e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.12e-84,168;CL:0000738,8.83e-81,136;CL:0000988,9.68e-79,177;CL:0002032,1.78e-78,161;CL:0000837,1.78e-78,161;CL:0002087,4.05e-76,115;CL:0002031,2.70e-70,120;CL:0000766,2.22e-45,72;CL:0000763,5.65e-44,108;CL:0000049,5.65e-44,108;CL:0002194,2.32e-40,59;CL:0000576,2.32e-40,59;CL:0000040,2.32e-40,59;CL:0000559,2.32e-40,59;CL:0000839,2.28e-38,66;CL:0002009,2.74e-38,61;CL:0000473,5.82e-38,48;CL:0000234,5.82e-38,48;CL:0000557,9.14e-37,67;CL:0000860,1.13e-34,42;CL:0002057,1.13e-34,42;CL:0000838,5.92e-31,52;CL:0000542,5.27e-30,53;CL:0000051,5.27e-30,53;CL:0000084,1.51e-18,25;CL:0000827,1.51e-18,25;CL:0000134,1.77e-17,354;CL:0000791,5.78e-17,18;CL:0000789,5.78e-17,18;CL:0002420,5.78e-17,18;CL:0002419,5.78e-17,18;CL:0000790,5.78e-17,18;CL:0002320,2.65e-16,361;CL:0000219,2.71e-12,386;CL:0000625,6.47e-12,11;CL:0000945,5.78e-11,24;CL:0000826,5.78e-11,24;CL:0002393,2.19e-10,9;CL:0002397,2.19e-10,9;CL:0000094,8.88e-09,8;CL:0000048,4.51e-08,427;CL:0000034,1.10e-07,441;CL:0000723,1.76e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;6.06e-25;42!CL:0000051;4.12e-17;53!CL:0000790;5.88e-17;18!CL:0000049;8.27e-13;108 | |||
|ontology_enrichment_disease=DOID:2531!6.76e-10!51;DOID:0060083!6.76e-10!51;DOID:1240!2.63e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.93e-09,51;DOID:0060083,1.93e-09,51;DOID:1240,6.01e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.71e-40!102;UBERON:0003061!3.71e-40!102;UBERON:0002193!1.26e-35!112;UBERON:0002371!1.31e-26!80;UBERON:0001474!7.08e-23!86;UBERON:0002405!9.05e-23!115;UBERON:0007023!1.96e-18!115;UBERON:0004765!5.47e-17!101;UBERON:0001434!5.47e-17!101;UBERON:0000178!2.02e-10!15;UBERON:0000179!2.02e-10!15;UBERON:0000463!2.02e-10!15;UBERON:0002384!1.16e-09!375;UBERON:0003081!9.58e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.37e-10;15!UBERON:0000179;5.37e-10;15!UBERON:0000463;5.37e-10;15!UBERON:0002390;6.60e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.49e-46,98;UBERON:0003061,1.49e-46,98;UBERON:0002193,5.86e-42,108;UBERON:0002405,8.25e-33,93;UBERON:0002371,3.37e-32,76;UBERON:0001474,3.96e-28,82;UBERON:0004765,1.32e-23,90;UBERON:0001434,2.08e-20,100;UBERON:0002384,3.80e-15,371;UBERON:0003081,3.17e-12,203;UBERON:0000178,5.73e-10,15;UBERON:0000179,5.73e-10,15;UBERON:0000463,5.73e-10,15;UBERON:0007023,7.23e-07,114 | |||
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| |||
|short_description=p1@ITGAL | |||
}} |
Revision as of 10:08, 11 September 2013
Short description: | p1@ITGAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ITGAL_5end |
Coexpression cluster: | C2369_CD14CD16_Natural_CD8_CD14_Basophils_CD4_Whole |
Association with transcript: | 0bp_to_ENST00000433423, ENST00000454514_5end |
EntrezGene: | ITGAL |
HGNC: | 6148 |
UniProt: | B4E021B4DQ77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.49e-46 | 98 |
blood island | 1.49e-46 | 98 |
hemolymphoid system | 5.86e-42 | 108 |
immune system | 8.25e-33 | 93 |
bone marrow | 3.37e-32 | 76 |
bone element | 3.96e-28 | 82 |
skeletal element | 1.32e-23 | 90 |
skeletal system | 2.08e-20 | 100 |
connective tissue | 3.80e-15 | 371 |
lateral plate mesoderm | 3.17e-12 | 203 |
blood | 5.73e-10 | 15 |
haemolymphatic fluid | 5.73e-10 | 15 |
organism substance | 5.73e-10 | 15 |
adult organism | 7.23e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.93e-09 | 51 |
immune system cancer | 1.93e-09 | 51 |
leukemia | 6.01e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.