FFCP PHASE1:Hg19::chr17:7462261..7462266,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8741|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11928|TSSclassifier=W|UniProt=|association_with_transcript=157bp_to_ENST00000396545_5end|coexpression_cluster_id=C294|description=CAGE_peak_13_at_TNFSF13_5end|id=chr17:7462261..7462266,+|ontology_enrichment_celltype=CL:0002194!4.88e-43!63;CL:0000576!4.88e-43!63;CL:0000040!4.88e-43!63;CL:0000559!4.88e-43!63;CL:0002009!9.44e-43!65;CL:0000766!5.48e-39!76;CL:0000557!6.34e-39!71;CL:0000839!2.97e-38!70;CL:0002057!2.71e-36!42;CL:0000860!6.43e-33!45;CL:0000763!3.12e-32!112;CL:0000049!3.12e-32!112;CL:0000738!2.89e-25!140;CL:0000037!1.24e-24!172;CL:0000566!1.24e-24!172;CL:0002087!1.87e-24!119;CL:0000988!6.36e-22!182;CL:0002031!2.40e-21!124;CL:0002032!4.38e-21!165;CL:0000837!4.38e-21!165;CL:0002393!1.79e-12!9;CL:0002397!1.79e-12!9|ontology_enrichment_celltype_v019=CL:0000576;5.67e-30;48!CL:0000473;1.46e-29;39!CL:0000234;1.46e-29;39!CL:0000235;5.11e-24;6!CL:0000766;1.04e-21;69!CL:0000860;7.75e-19;33!CL:0002057;7.75e-19;33!CL:0002619;8.16e-18;3!CL:0002393;6.70e-15;6!CL:0002397;6.70e-15;6!CL:0000763;1.04e-13;100!CL:0000875;3.05e-08;3!CL:0002396;3.05e-08;3!CL:0000738;9.54e-08;136!CL:0002087;1.91e-07;104|ontology_enrichment_celltype_v019_2=CL:0002194,2.53e-56,59;CL:0000576,2.53e-56,59;CL:0000040,2.53e-56,59;CL:0000559,2.53e-56,59;CL:0000473,3.96e-55,48;CL:0000234,3.96e-55,48;CL:0002009,2.49e-54,61;CL:0000839,7.20e-50,66;CL:0000557,4.69e-49,67;CL:0000766,2.55e-45,72;CL:0000860,1.78e-37,42;CL:0002057,1.78e-37,42;CL:0002087,3.16e-31,115;CL:0000763,5.05e-31,108;CL:0000049,5.05e-31,108;CL:0000738,1.20e-27,136;CL:0002031,2.00e-27,120;CL:0000235,5.51e-24,6;CL:0000037,4.61e-23,168;CL:0000988,1.37e-21,177;CL:0002393,2.04e-21,9;CL:0002397,2.04e-21,9;CL:0002032,9.46e-21,161;CL:0000837,9.46e-21,161;CL:0002619,7.75e-18,3;CL:0000875,3.54e-08,3;CL:0002396,3.54e-08,3;CL:0000134,9.17e-08,354;CL:0002320,1.70e-07,361|ontology_enrichment_development_v019=CL:0002057;8.60e-25;42!CL:0000049;2.02e-12;108!UBERON:0008801;3.41e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.68e-40!102;UBERON:0003061!3.68e-40!102;UBERON:0002193!8.24e-37!112;UBERON:0007023!3.05e-35!115;UBERON:0002371!8.64e-34!80;UBERON:0001474!4.09e-30!86;UBERON:0004765!4.64e-26!101;UBERON:0001434!4.64e-26!101;UBERON:0002405!6.49e-25!115;UBERON:0003081!1.67e-13!216;UBERON:0002204!4.09e-11!167;UBERON:0001049!2.85e-08!57;UBERON:0005068!2.85e-08!57;UBERON:0006241!2.85e-08!57;UBERON:0007135!2.85e-08!57;UBERON:0002020!4.40e-07!34;UBERON:0003528!4.40e-07!34;UBERON:0001893!5.51e-07!34;UBERON:0000479!9.49e-07!787|ontology_enrichment_uberon_v019=UBERON:0001831;3.41e-07;1!UBERON:0001567;3.41e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.11e-42,76;UBERON:0002390,1.15e-40,98;UBERON:0003061,1.15e-40,98;UBERON:0001474,3.37e-39,82;UBERON:0002193,2.15e-36,108;UBERON:0004765,2.87e-35,90;UBERON:0002405,5.74e-34,93;UBERON:0001434,3.13e-31,100;UBERON:0003081,1.14e-16,203;UBERON:0002204,1.43e-16,167;UBERON:0000926,1.56e-09,315;UBERON:0004120,1.56e-09,315;UBERON:0006603,1.56e-09,315;UBERON:0001831,3.52e-07,1;UBERON:0001567,3.52e-07,1;UBERON:0008801,3.52e-07,1;UBERON:0002384,3.96e-07,371;UBERON:0002363,8.75e-07,1;UBERON:0007645,8.75e-07,1;UBERON:0007647,8.75e-07,1;UBERON:0010115,8.75e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.786728553697808,0,0.928896739896456,0,0,0,0,0,0.293600439334847,1.10799081706375,0.802177789880567,0.868043482863407,2.23915474239924,5.83008598834163,2.57575567634187,0.436194716338694,0.377875943688809,0.970336244751265,0.464858073811369,0,0,0.28769239232215,1.2808035326455,0.945928919554341,0.689491361473237,0.645484683583826,1.35426486594342,0.941211697713023,1.09162460023138,0.898893937780338,0.612167784741805,0,1.91801137739712,1.64925650093358,1.19678194572979,1.70489900213078,0.870627715885752,0.56738522469114,0,1.25624332628372,0.521482918420201,0.868755378820466,1.81619850790011,0.736555271975129,0,2.95757400836718,3.18906449947565,1.67726916406701,2.02191536063691,2.10247649978109,1.28580469357664,2.28010194992999,1.19350006319454,0.91332076882317,0,0,0,0.426730222566507,0,0,1.98313461835459,0,0,0,0.382273228125229,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.261958150995425,0,0,0.649094787309367,0,0.531831842075461,0.238490624305342,1.14398982156026,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,4.67812311566055,0.234004265139238,3.12125440806329,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8741 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11928 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=157bp_to_ENST00000396545_5end | |||
|coexpression_cluster_id=C294 | |||
|description=CAGE_peak_13_at_TNFSF13_5end | |||
|id=chr17:7462261..7462266,+ | |||
|ontology_enrichment_celltype=CL:0002194!4.88e-43!63;CL:0000576!4.88e-43!63;CL:0000040!4.88e-43!63;CL:0000559!4.88e-43!63;CL:0002009!9.44e-43!65;CL:0000766!5.48e-39!76;CL:0000557!6.34e-39!71;CL:0000839!2.97e-38!70;CL:0002057!2.71e-36!42;CL:0000860!6.43e-33!45;CL:0000763!3.12e-32!112;CL:0000049!3.12e-32!112;CL:0000738!2.89e-25!140;CL:0000037!1.24e-24!172;CL:0000566!1.24e-24!172;CL:0002087!1.87e-24!119;CL:0000988!6.36e-22!182;CL:0002031!2.40e-21!124;CL:0002032!4.38e-21!165;CL:0000837!4.38e-21!165;CL:0002393!1.79e-12!9;CL:0002397!1.79e-12!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;5.67e-30;48!CL:0000473;1.46e-29;39!CL:0000234;1.46e-29;39!CL:0000235;5.11e-24;6!CL:0000766;1.04e-21;69!CL:0000860;7.75e-19;33!CL:0002057;7.75e-19;33!CL:0002619;8.16e-18;3!CL:0002393;6.70e-15;6!CL:0002397;6.70e-15;6!CL:0000763;1.04e-13;100!CL:0000875;3.05e-08;3!CL:0002396;3.05e-08;3!CL:0000738;9.54e-08;136!CL:0002087;1.91e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,2.53e-56,59;CL:0000576,2.53e-56,59;CL:0000040,2.53e-56,59;CL:0000559,2.53e-56,59;CL:0000473,3.96e-55,48;CL:0000234,3.96e-55,48;CL:0002009,2.49e-54,61;CL:0000839,7.20e-50,66;CL:0000557,4.69e-49,67;CL:0000766,2.55e-45,72;CL:0000860,1.78e-37,42;CL:0002057,1.78e-37,42;CL:0002087,3.16e-31,115;CL:0000763,5.05e-31,108;CL:0000049,5.05e-31,108;CL:0000738,1.20e-27,136;CL:0002031,2.00e-27,120;CL:0000235,5.51e-24,6;CL:0000037,4.61e-23,168;CL:0000988,1.37e-21,177;CL:0002393,2.04e-21,9;CL:0002397,2.04e-21,9;CL:0002032,9.46e-21,161;CL:0000837,9.46e-21,161;CL:0002619,7.75e-18,3;CL:0000875,3.54e-08,3;CL:0002396,3.54e-08,3;CL:0000134,9.17e-08,354;CL:0002320,1.70e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;8.60e-25;42!CL:0000049;2.02e-12;108!UBERON:0008801;3.41e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.68e-40!102;UBERON:0003061!3.68e-40!102;UBERON:0002193!8.24e-37!112;UBERON:0007023!3.05e-35!115;UBERON:0002371!8.64e-34!80;UBERON:0001474!4.09e-30!86;UBERON:0004765!4.64e-26!101;UBERON:0001434!4.64e-26!101;UBERON:0002405!6.49e-25!115;UBERON:0003081!1.67e-13!216;UBERON:0002204!4.09e-11!167;UBERON:0001049!2.85e-08!57;UBERON:0005068!2.85e-08!57;UBERON:0006241!2.85e-08!57;UBERON:0007135!2.85e-08!57;UBERON:0002020!4.40e-07!34;UBERON:0003528!4.40e-07!34;UBERON:0001893!5.51e-07!34;UBERON:0000479!9.49e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;3.41e-07;1!UBERON:0001567;3.41e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.11e-42,76;UBERON:0002390,1.15e-40,98;UBERON:0003061,1.15e-40,98;UBERON:0001474,3.37e-39,82;UBERON:0002193,2.15e-36,108;UBERON:0004765,2.87e-35,90;UBERON:0002405,5.74e-34,93;UBERON:0001434,3.13e-31,100;UBERON:0003081,1.14e-16,203;UBERON:0002204,1.43e-16,167;UBERON:0000926,1.56e-09,315;UBERON:0004120,1.56e-09,315;UBERON:0006603,1.56e-09,315;UBERON:0001831,3.52e-07,1;UBERON:0001567,3.52e-07,1;UBERON:0008801,3.52e-07,1;UBERON:0002384,3.96e-07,371;UBERON:0002363,8.75e-07,1;UBERON:0007645,8.75e-07,1;UBERON:0007647,8.75e-07,1;UBERON:0010115,8.75e-07,1 | |||
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|short_description=p13@TNFSF13 | |||
}} |
Revision as of 15:50, 11 September 2013
Short description: | p13@TNFSF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_TNFSF13_5end |
Coexpression cluster: | C294_CD14_Macrophage_Monocytederived_CD14CD16_Neutrophils_Basophils_Peripheral |
Association with transcript: | 157bp_to_ENST00000396545_5end |
EntrezGene: | TNFSF13 |
HGNC: | 11928 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.11e-42 | 76 |
hematopoietic system | 1.15e-40 | 98 |
blood island | 1.15e-40 | 98 |
bone element | 3.37e-39 | 82 |
hemolymphoid system | 2.15e-36 | 108 |
skeletal element | 2.87e-35 | 90 |
immune system | 5.74e-34 | 93 |
skeletal system | 3.13e-31 | 100 |
lateral plate mesoderm | 1.14e-16 | 203 |
musculoskeletal system | 1.43e-16 | 167 |
mesoderm | 1.56e-09 | 315 |
mesoderm-derived structure | 1.56e-09 | 315 |
presumptive mesoderm | 1.56e-09 | 315 |
parotid gland | 3.52e-07 | 1 |
cheek | 3.52e-07 | 1 |
parotid gland primordium | 3.52e-07 | 1 |
connective tissue | 3.96e-07 | 371 |
dura mater | 8.75e-07 | 1 |
future meninx | 8.75e-07 | 1 |
ectomeninx | 8.75e-07 | 1 |
future dura mater | 8.75e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.