FFCP PHASE1:Hg19::chr18:25757019..25757024,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1000|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1759|TSSclassifier=W|UniProt=P19022|association_with_transcript=385bp_to_ENST00000269141_5end|coexpression_cluster_id=C3710|description=CAGE_peak_6_at_CDH2_5end|id=chr18:25757019..25757024,-|ontology_enrichment_celltype=CL:0000055!1.44e-19!180;CL:0000359!3.85e-11!32;CL:0000680!1.39e-10!57;CL:0000056!1.39e-10!57;CL:0000355!1.39e-10!57;CL:0000057!4.12e-10!75;CL:0000187!6.72e-10!54;CL:0000222!1.29e-09!119;CL:0000183!1.37e-09!59;CL:0000192!3.56e-09!42;CL:0000514!3.56e-09!42;CL:0000393!5.58e-08!60;CL:0000211!5.58e-08!60|ontology_enrichment_celltype_v019=CL:0000359;2.22e-12;32!CL:0002580;5.02e-08;3!CL:0000192;6.60e-07;43|ontology_enrichment_celltype_v019_2=CL:0000359,3.22e-13,32;CL:0000192,6.80e-09,43;CL:0000514,6.80e-09,43;CL:0002580,3.82e-08,3|ontology_enrichment_development_v019=CL:0000514;6.60e-07;43|ontology_enrichment_disease=DOID:2394!4.57e-07!14|ontology_enrichment_disease_v019=DOID:2394;7.36e-10;14|ontology_enrichment_disease_v019_2=DOID:2394,9.74e-10,14|ontology_enrichment_uberon=UBERON:0003914!1.93e-12!118;UBERON:0004872!3.91e-11!84;UBERON:0000025!5.50e-11!194;UBERON:0004573!4.99e-10!33;UBERON:0004571!4.99e-10!33;UBERON:0001637!9.11e-10!42;UBERON:0003509!9.11e-10!42;UBERON:0004572!9.11e-10!42;UBERON:0000475!4.58e-09!365;UBERON:0000477!5.30e-09!286;UBERON:0005256!5.92e-09!143;UBERON:0001134!6.41e-09!61;UBERON:0002036!6.41e-09!61;UBERON:0003082!6.41e-09!61;UBERON:0001009!7.84e-09!113;UBERON:0002385!1.47e-08!63;UBERON:0001015!1.47e-08!63;UBERON:0000383!1.47e-08!63;UBERON:0001981!1.50e-08!60;UBERON:0007500!1.50e-08!60;UBERON:0004537!1.50e-08!60;UBERON:0006965!1.50e-08!60;UBERON:0000483!1.88e-08!309;UBERON:0000119!3.14e-08!312;UBERON:0000914!3.73e-08!83;UBERON:0002329!3.73e-08!83;UBERON:0003077!3.73e-08!83;UBERON:0003059!3.73e-08!83;UBERON:0007282!3.73e-08!83;UBERON:0009618!3.73e-08!83;UBERON:0007285!3.73e-08!83;UBERON:0004535!5.28e-08!110;UBERON:0007100!5.85e-08!27;UBERON:0002049!1.94e-07!79;UBERON:0007798!1.94e-07!79;UBERON:0004111!3.23e-07!241;UBERON:0004290!3.33e-07!70;UBERON:0000055!4.70e-07!69;UBERON:0000481!7.88e-07!347;UBERON:0000948!8.27e-07!24;UBERON:0005498!8.27e-07!24;UBERON:0004140!8.27e-07!24;UBERON:0009881!8.27e-07!24;UBERON:0004141!8.27e-07!24;UBERON:0003084!8.27e-07!24;UBERON:0007005!8.27e-07!24;UBERON:0004139!8.27e-07!24;UBERON:0004291!8.27e-07!24|ontology_enrichment_uberon_v019=UBERON:0004573;2.17e-12;33!UBERON:0004571;2.17e-12;33!UBERON:0001637;1.14e-10;42!UBERON:0003509;1.14e-10;42!UBERON:0004572;1.14e-10;42|ontology_enrichment_uberon_v019_2=UBERON:0004573,6.19e-15,33;UBERON:0004571,6.19e-15,33;UBERON:0001637,4.35e-14,42;UBERON:0003509,4.35e-14,42;UBERON:0004572,4.35e-14,42;UBERON:0004872,2.75e-11,83;UBERON:0003914,4.18e-11,117;UBERON:0007500,6.83e-10,59;UBERON:0001981,6.83e-10,59;UBERON:0004537,6.83e-10,59;UBERON:0006965,6.83e-10,59;UBERON:0002049,3.14e-08,78;UBERON:0007798,3.14e-08,78;UBERON:0000055,5.73e-08,68;UBERON:0004535,6.64e-08,109;UBERON:0001009,1.58e-07,112|phase1_expression=1.09007027562334,0.642301571672949,0.986680828671798,1.0007329835313,2.23480547213644,2.61701557230111,0,0,0,0,1.39560233594486,0,0,0.618831764800233,0.662794751455832,2.01697543935533,1.20538905604795,0.730310090387373,0.487932798790507,0.61560529038394,0,0.313454721478088,0.85870796139317,0.958120975510189,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0.850813354476611,0,2.28370442802128,0.196468613246569,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,1.53316637465883,0,0.183201743930407,0,0,0,0.993943903390637,1.64619665163954,1.58891016975863,3.44203944898576,0.354668382198357,1.12135520028461,1.06748995729705,0.24666754841716,0,0.942974704487816,0.326923806226917,0.151357427644931,0,0,0.312160076830321,0,0,0,0.161872944368132,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0,0,0,0.336672227908132,0.250237039743928,0.554128230968366,0,0.30648779579902,0.751190294532984,0.453728732640084,1.25572744982203,0.213557388818567,0.211931901159562,0.900273288253207,0.309157587715317,1.03056216018252,1.11670113798954,0.506328996723799,0.584622030967192,0.504867548488229,0.184099797284599,0,3.55009592516614,1.20902517873168,0.847802961552438,0,0,0,0.243947412259191,0.265059536642971,0,0.310983165046111,0.252320850875628,0.72995471815166,0,0,0,0,0,0.354920400119532,0.337169380156203,0.482022059766964,0.220587945464788,0,0.71181185733329,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,1.47008711385542,1.26755034821831,0,0.590789906681404,0,0,1.3725424823882,0,0,0,0,0,0,0,1.15930404975077,0.821860859650752,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1000 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1759 | |||
|TSSclassifier=W | |||
|UniProt=P19022 | |||
|association_with_transcript=385bp_to_ENST00000269141_5end | |||
|coexpression_cluster_id=C3710 | |||
|description=CAGE_peak_6_at_CDH2_5end | |||
|id=chr18:25757019..25757024,- | |||
|ontology_enrichment_celltype=CL:0000055!1.44e-19!180;CL:0000359!3.85e-11!32;CL:0000680!1.39e-10!57;CL:0000056!1.39e-10!57;CL:0000355!1.39e-10!57;CL:0000057!4.12e-10!75;CL:0000187!6.72e-10!54;CL:0000222!1.29e-09!119;CL:0000183!1.37e-09!59;CL:0000192!3.56e-09!42;CL:0000514!3.56e-09!42;CL:0000393!5.58e-08!60;CL:0000211!5.58e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.22e-12;32!CL:0002580;5.02e-08;3!CL:0000192;6.60e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.22e-13,32;CL:0000192,6.80e-09,43;CL:0000514,6.80e-09,43;CL:0002580,3.82e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000514;6.60e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!4.57e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.36e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.74e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.93e-12!118;UBERON:0004872!3.91e-11!84;UBERON:0000025!5.50e-11!194;UBERON:0004573!4.99e-10!33;UBERON:0004571!4.99e-10!33;UBERON:0001637!9.11e-10!42;UBERON:0003509!9.11e-10!42;UBERON:0004572!9.11e-10!42;UBERON:0000475!4.58e-09!365;UBERON:0000477!5.30e-09!286;UBERON:0005256!5.92e-09!143;UBERON:0001134!6.41e-09!61;UBERON:0002036!6.41e-09!61;UBERON:0003082!6.41e-09!61;UBERON:0001009!7.84e-09!113;UBERON:0002385!1.47e-08!63;UBERON:0001015!1.47e-08!63;UBERON:0000383!1.47e-08!63;UBERON:0001981!1.50e-08!60;UBERON:0007500!1.50e-08!60;UBERON:0004537!1.50e-08!60;UBERON:0006965!1.50e-08!60;UBERON:0000483!1.88e-08!309;UBERON:0000119!3.14e-08!312;UBERON:0000914!3.73e-08!83;UBERON:0002329!3.73e-08!83;UBERON:0003077!3.73e-08!83;UBERON:0003059!3.73e-08!83;UBERON:0007282!3.73e-08!83;UBERON:0009618!3.73e-08!83;UBERON:0007285!3.73e-08!83;UBERON:0004535!5.28e-08!110;UBERON:0007100!5.85e-08!27;UBERON:0002049!1.94e-07!79;UBERON:0007798!1.94e-07!79;UBERON:0004111!3.23e-07!241;UBERON:0004290!3.33e-07!70;UBERON:0000055!4.70e-07!69;UBERON:0000481!7.88e-07!347;UBERON:0000948!8.27e-07!24;UBERON:0005498!8.27e-07!24;UBERON:0004140!8.27e-07!24;UBERON:0009881!8.27e-07!24;UBERON:0004141!8.27e-07!24;UBERON:0003084!8.27e-07!24;UBERON:0007005!8.27e-07!24;UBERON:0004139!8.27e-07!24;UBERON:0004291!8.27e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.17e-12;33!UBERON:0004571;2.17e-12;33!UBERON:0001637;1.14e-10;42!UBERON:0003509;1.14e-10;42!UBERON:0004572;1.14e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,6.19e-15,33;UBERON:0004571,6.19e-15,33;UBERON:0001637,4.35e-14,42;UBERON:0003509,4.35e-14,42;UBERON:0004572,4.35e-14,42;UBERON:0004872,2.75e-11,83;UBERON:0003914,4.18e-11,117;UBERON:0007500,6.83e-10,59;UBERON:0001981,6.83e-10,59;UBERON:0004537,6.83e-10,59;UBERON:0006965,6.83e-10,59;UBERON:0002049,3.14e-08,78;UBERON:0007798,3.14e-08,78;UBERON:0000055,5.73e-08,68;UBERON:0004535,6.64e-08,109;UBERON:0001009,1.58e-07,112 | |||
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| |||
|short_description=p6@CDH2 | |||
}} |
Revision as of 17:08, 11 September 2013
Short description: | p6@CDH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_CDH2_5end |
Coexpression cluster: | C3710_Smooth_Fibroblast_heart_Neural_Preadipocyte_cholangiocellular_Lens |
Association with transcript: | 385bp_to_ENST00000269141_5end |
EntrezGene: | CDH2 |
HGNC: | 1759 |
UniProt: | P19022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.22e-13 | 32 |
smooth muscle cell | 6.80e-09 | 43 |
smooth muscle myoblast | 6.80e-09 | 43 |
preadipocyte of the breast | 3.82e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 6.19e-15 | 33 |
systemic arterial system | 6.19e-15 | 33 |
artery | 4.35e-14 | 42 |
arterial blood vessel | 4.35e-14 | 42 |
arterial system | 4.35e-14 | 42 |
splanchnic layer of lateral plate mesoderm | 2.75e-11 | 83 |
epithelial tube | 4.18e-11 | 117 |
epithelial tube open at both ends | 6.83e-10 | 59 |
blood vessel | 6.83e-10 | 59 |
blood vasculature | 6.83e-10 | 59 |
vascular cord | 6.83e-10 | 59 |
vasculature | 3.14e-08 | 78 |
vascular system | 3.14e-08 | 78 |
vessel | 5.73e-08 | 68 |
cardiovascular system | 6.64e-08 | 109 |
circulatory system | 1.58e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.74e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.