FFCP PHASE1:Hg19::chr19:6591113..6591172,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=970|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11937|TSSclassifier=S|UniProt=P32970,B4DPR8,Q53XX4|association_with_transcript=0bp_to_ENST00000245903,ENST00000423145,NM_001252,uc002mfi.2,uc010xjf.1_5end|coexpression_cluster_id=C1828|description=CAGE_peak_1_at_CD70_5end|id=chr19:6591113..6591172,-|ontology_enrichment_celltype=CL:0000542!6.66e-13!53;CL:0000051!6.66e-13!53;CL:0000945!1.60e-12!24;CL:0000826!1.60e-12!24;CL:0000838!2.54e-12!52;CL:1000497!1.19e-07!18;CL:0002518!1.19e-07!18|ontology_enrichment_celltype_v019=CL:0000945;1.40e-16;24!CL:1000497;7.45e-10;17!CL:0002518;7.45e-10;17!CL:0000542;1.18e-08;53!CL:1000449;5.25e-08;15!CL:1000507;1.93e-07;10!CL:1000494;1.93e-07;10|ontology_enrichment_celltype_v019_2=CL:0000945,9.12e-17,24;CL:0000826,9.12e-17,24;CL:0000542,8.42e-15,53;CL:0000051,8.42e-15,53;CL:0000838,5.15e-14,52;CL:1000497,7.38e-10,17;CL:0002518,7.38e-10,17;CL:1000449,5.23e-08,15;CL:1000507,1.91e-07,10;CL:1000494,1.91e-07,10;CL:0000236,2.75e-07,14|ontology_enrichment_development_v019=CL:0000051;1.18e-08;53|ontology_enrichment_disease=DOID:14566!3.60e-09!239;DOID:162!4.17e-09!235|ontology_enrichment_disease_v019=DOID:0060058;1.92e-07;10|ontology_enrichment_disease_v019_2=DOID:14566,1.34e-13,239;DOID:162,3.61e-13,235;DOID:0050686,2.35e-08,137;DOID:0060058,1.92e-07,10;DOID:2531,3.97e-07,51;DOID:0060083,3.97e-07,51|ontology_enrichment_uberon=UBERON:0002113!6.34e-09!27;UBERON:0003918!6.34e-09!27;UBERON:0005095!6.34e-09!27;UBERON:0007687!6.34e-09!27;UBERON:0001737!5.02e-08!9;UBERON:0000489!1.87e-07!32;UBERON:0001557!5.38e-07!19|ontology_enrichment_uberon_v019=UBERON:0001737;5.24e-11;9!UBERON:0001557;5.24e-11;9!UBERON:0002113;8.56e-11;24!UBERON:0011143;8.56e-11;24!UBERON:0006555;5.25e-08;15!UBERON:0004819;5.25e-08;15!UBERON:0001285;5.25e-08;15!UBERON:0007684;5.25e-08;15!UBERON:0000489;5.76e-08;29!UBERON:0006554;1.60e-07;30!UBERON:0001008;1.60e-07;30!UBERON:0004211;1.93e-07;10!UBERON:0009773;1.93e-07;10!UBERON:0001231;1.93e-07;10!UBERON:0004810;1.93e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.36e-11,9;UBERON:0001557,1.18e-09,19;UBERON:0002113,1.50e-09,26;UBERON:0003918,1.50e-09,26;UBERON:0011143,1.50e-09,26;UBERON:0005095,1.50e-09,26;UBERON:0007687,1.50e-09,26;UBERON:0004211,5.23e-08,15;UBERON:0009773,5.23e-08,15;UBERON:0001231,5.23e-08,15;UBERON:0001285,5.23e-08,15;UBERON:0007684,5.23e-08,15;UBERON:0004208,5.23e-08,15;UBERON:0004810,1.91e-07,10;UBERON:0006555,2.69e-07,16;UBERON:0004819,2.69e-07,16;UBERON:0000489,3.91e-07,31|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36162573225888,1.20538905604795,1.46062018077475,2.43966399395253,2.09305798730539,9.18003110599138,11.2843699732112,0,0.547497700291537,0.376627918784408,106.749527829888,85.3025124384936,75.7197716237594,0.393364276848904,1.15148819429164,0.309632246632152,0,0.30120591877825,0,19.1343985433345,137.051140117874,0,1.66198622559563,0.401088894940283,0.434021741431704,0.447830948479849,0.32389366601898,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.512321413058201,0,0.344745680736619,0,0,0.376484679085209,0,0,0.612167784741805,0,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0,0,1.81619850790011,0.736555271975129,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,2.66852776159066,2.13365111283254,1.20118796110804,0.574752439954483,2.64417949113945,3.81621501814146,3.41527781465669,7.6340834618222,1.52909291250092,1.32171328579026,1.68152568894461,0,0.393419540227666,0,1.02800749499755,12.3718006589102,0,0,0,27.1841514799824,2.94605907474837,2.43687284041983,2.16643091012012,54.5669022031376,64.11925834702,9.86627427622057,12.1594007825773,9.27369874352168,0,0,0,7.59172596073693,1.53288197440768,0.68725489096526,0.253019692019503,0.318565414324097,0.651083453856419,0.950452044448374,0,1.02389288923535,0,0,1.64225599384209,1.61285394579786,1.33720097891754,0,0,0,0,1.0843174571537,0,0.434539556882471,0,0.973269740605272,0.378139268656271,0.221729397462564,0.527008714158756,0,0.364295288292542,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.976248230192678,0,2.43042584364528,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.264818361626438,1.14734648299525,1.41867352879343,0.560677600142307,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0.587172493218824,0,0,0,0,0,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.337552664482532,0,0,0.0920498986422993,0,0,0,0,0,1.36373060295417,0,2.80539524098069,1.19276791489337,1.51052125730374,4.25010325563019,1.26160425437814,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0,74.6515908251415,63.2192587792881,42.4179412594928,72.9043159761124,61.2241237899661,51.0131831088858,95.0560722529159,73.7792708871301,57.3273263850122,0,0,0,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0,0.325808305310325,0,0,1.04337364477569,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0.297262324577456,0,0.503946384596579,0.2835501944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0,0.5290268405154,3.71995018166751,0,1.29787968637137,0,0,0,4.4875085086472,5.61156551057677,92.6300587311237,0.50141507858475,0.0757786982182394,0,0,0,0.213233981900981,0,0.258355639344024,1.36564371450887,33.5274269116034,0,0.202117188958219,0,0,1.68380132536469,0.286888821570705,0.332660356546013,0.976839223331694,1.49418284228802,0,0,0,0,0.406896178315738,0,0.201273793591026,226.321355566082|short_description=p1@CD70}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=970 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11937 | |||
|TSSclassifier=S | |||
|UniProt=P32970,B4DPR8,Q53XX4 | |||
|association_with_transcript=0bp_to_ENST00000245903,ENST00000423145,NM_001252,uc002mfi.2,uc010xjf.1_5end | |||
|coexpression_cluster_id=C1828 | |||
|description=CAGE_peak_1_at_CD70_5end | |||
|id=chr19:6591113..6591172,- | |||
|ontology_enrichment_celltype=CL:0000542!6.66e-13!53;CL:0000051!6.66e-13!53;CL:0000945!1.60e-12!24;CL:0000826!1.60e-12!24;CL:0000838!2.54e-12!52;CL:1000497!1.19e-07!18;CL:0002518!1.19e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.40e-16;24!CL:1000497;7.45e-10;17!CL:0002518;7.45e-10;17!CL:0000542;1.18e-08;53!CL:1000449;5.25e-08;15!CL:1000507;1.93e-07;10!CL:1000494;1.93e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,9.12e-17,24;CL:0000826,9.12e-17,24;CL:0000542,8.42e-15,53;CL:0000051,8.42e-15,53;CL:0000838,5.15e-14,52;CL:1000497,7.38e-10,17;CL:0002518,7.38e-10,17;CL:1000449,5.23e-08,15;CL:1000507,1.91e-07,10;CL:1000494,1.91e-07,10;CL:0000236,2.75e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;1.18e-08;53 | |||
|ontology_enrichment_disease=DOID:14566!3.60e-09!239;DOID:162!4.17e-09!235 | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.92e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.34e-13,239;DOID:162,3.61e-13,235;DOID:0050686,2.35e-08,137;DOID:0060058,1.92e-07,10;DOID:2531,3.97e-07,51;DOID:0060083,3.97e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002113!6.34e-09!27;UBERON:0003918!6.34e-09!27;UBERON:0005095!6.34e-09!27;UBERON:0007687!6.34e-09!27;UBERON:0001737!5.02e-08!9;UBERON:0000489!1.87e-07!32;UBERON:0001557!5.38e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.24e-11;9!UBERON:0001557;5.24e-11;9!UBERON:0002113;8.56e-11;24!UBERON:0011143;8.56e-11;24!UBERON:0006555;5.25e-08;15!UBERON:0004819;5.25e-08;15!UBERON:0001285;5.25e-08;15!UBERON:0007684;5.25e-08;15!UBERON:0000489;5.76e-08;29!UBERON:0006554;1.60e-07;30!UBERON:0001008;1.60e-07;30!UBERON:0004211;1.93e-07;10!UBERON:0009773;1.93e-07;10!UBERON:0001231;1.93e-07;10!UBERON:0004810;1.93e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.36e-11,9;UBERON:0001557,1.18e-09,19;UBERON:0002113,1.50e-09,26;UBERON:0003918,1.50e-09,26;UBERON:0011143,1.50e-09,26;UBERON:0005095,1.50e-09,26;UBERON:0007687,1.50e-09,26;UBERON:0004211,5.23e-08,15;UBERON:0009773,5.23e-08,15;UBERON:0001231,5.23e-08,15;UBERON:0001285,5.23e-08,15;UBERON:0007684,5.23e-08,15;UBERON:0004208,5.23e-08,15;UBERON:0004810,1.91e-07,10;UBERON:0006555,2.69e-07,16;UBERON:0004819,2.69e-07,16;UBERON:0000489,3.91e-07,31 | |||
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| |||
|short_description=p1@CD70 | |||
}} |
Revision as of 22:47, 11 September 2013
Short description: | p1@CD70 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CD70_5end |
Coexpression cluster: | C1828_epithelioid_lymphangiectasia_cord_meningioma_adult_renal_serous |
Association with transcript: | 0bp_to_ENST00000245903, ENST00000423145, NM_001252, uc002mfi.2, uc010xjf.1_5end |
EntrezGene: | CD70 |
HGNC: | 11937 |
UniProt: | P32970B4DPR8Q53XX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 9.12e-17 | 24 |
pro-B cell | 9.12e-17 | 24 |
lymphocyte | 8.42e-15 | 53 |
common lymphoid progenitor | 8.42e-15 | 53 |
lymphoid lineage restricted progenitor cell | 5.15e-14 | 52 |
kidney cell | 7.38e-10 | 17 |
kidney epithelial cell | 7.38e-10 | 17 |
epithelial cell of nephron | 5.23e-08 | 15 |
kidney tubule cell | 1.91e-07 | 10 |
nephron tubule epithelial cell | 1.91e-07 | 10 |
B cell | 2.75e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.36e-11 | 9 |
upper respiratory tract | 1.18e-09 | 19 |
kidney | 1.50e-09 | 26 |
kidney mesenchyme | 1.50e-09 | 26 |
upper urinary tract | 1.50e-09 | 26 |
kidney rudiment | 1.50e-09 | 26 |
kidney field | 1.50e-09 | 26 |
nephron epithelium | 5.23e-08 | 15 |
renal tubule | 5.23e-08 | 15 |
nephron tubule | 5.23e-08 | 15 |
nephron | 5.23e-08 | 15 |
uriniferous tubule | 5.23e-08 | 15 |
nephrogenic mesenchyme | 5.23e-08 | 15 |
nephron tubule epithelium | 1.91e-07 | 10 |
excretory tube | 2.69e-07 | 16 |
kidney epithelium | 2.69e-07 | 16 |
cavitated compound organ | 3.91e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.34e-13 | 239 |
cancer | 3.61e-13 | 235 |
organ system cancer | 2.35e-08 | 137 |
lymphoma | 1.92e-07 | 10 |
hematologic cancer | 3.97e-07 | 51 |
immune system cancer | 3.97e-07 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.