FFCP PHASE1:Hg19::chr1:158656386..158656417,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6708|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11272|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000467387_5end|coexpression_cluster_id=C33|description=CAGE_peak_1_at_SPTA1_5end|id=chr1:158656386..158656417,-|ontology_enrichment_celltype=CL:0000764!2.41e-09!2;CL:0000765!2.41e-09!2;CL:0000050!2.41e-09!2;CL:0000038!2.41e-09!2;CL:0000558!2.41e-09!2;CL:0000547!2.41e-09!2;CL:0000549!2.41e-09!2;CL:0000550!2.41e-09!2;CL:0000552!2.41e-09!2|ontology_enrichment_celltype_v019=CL:0000764;3.30e-16;2!CL:0000558;3.30e-16;2|ontology_enrichment_celltype_v019_2=CL:0000764,3.30e-16,2;CL:0000765,3.30e-16,2;CL:0000050,3.30e-16,2;CL:0000038,3.30e-16,2;CL:0000558,3.30e-16,2;CL:0000547,3.30e-16,2;CL:0000549,3.30e-16,2;CL:0000550,3.30e-16,2;CL:0000552,3.30e-16,2;CL:0000763,1.53e-07,108;CL:0000049,1.53e-07,108|ontology_enrichment_development_v019=UBERON:0004140;2.37e-08;1|ontology_enrichment_disease=DOID:1036!2.83e-17!8;DOID:8692!1.42e-15!31;DOID:1240!8.00e-12!39;DOID:2531!2.00e-08!51;DOID:0060083!2.00e-08!51|ontology_enrichment_disease_v019=DOID:1036;5.32e-23;8!DOID:8692;1.85e-21;31!DOID:1240;3.12e-14;39!DOID:2531;1.94e-09;51!DOID:0060083;1.94e-09;51!DOID:8552;1.10e-08;1|ontology_enrichment_disease_v019_2=DOID:1036,5.45e-23,8;DOID:8692,5.38e-22,31;DOID:1240,3.86e-17,39;DOID:2531,1.04e-12,51;DOID:0060083,1.04e-12,51;DOID:8552,1.10e-08,1|ontology_enrichment_uberon=UBERON:0000178!6.48e-15!15;UBERON:0000179!6.48e-15!15;UBERON:0000463!6.48e-15!15;UBERON:0000341!1.33e-08!2;UBERON:0007023!5.33e-07!115|ontology_enrichment_uberon_v019=UBERON:0000178;3.03e-16;15!UBERON:0000179;3.03e-16;15!UBERON:0000463;3.03e-16;15!UBERON:0002390;4.56e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.68e-16,15;UBERON:0000179,2.68e-16,15;UBERON:0000463,2.68e-16,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,4.74091352595139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,351.035062510141,267.187030947448,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,3.04468565539302,0,1.70894156152249,1.42939065274673,2.46817363851717,0.648473311192717,0.540031437238115,2.37937552888281,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50565556505718,44.3114636211764,5.67956924799565,0,32.4270111702054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4604163253136,11.279783030859,17.4495655542788,17.6212666324635,43.6433585265626,36.3964765865067,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,2.14987111957524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0.146552233678082,18.550964447711,0,0,0,0,0.320362237703084,11.7903228824749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,9.53976742008942,0,0,0,0,0.730336388246517,0,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5440835294255,0.714193294391221,0,0.248298857183432,0,0.12729431655633,0,0,0.342233301085281,0,0,1.33064142618405,0,0,0,0,0,0,0,0,0,0|short_description=p1@SPTA1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6708 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11272 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000467387_5end | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_1_at_SPTA1_5end | |||
|id=chr1:158656386..158656417,- | |||
|ontology_enrichment_celltype=CL:0000764!2.41e-09!2;CL:0000765!2.41e-09!2;CL:0000050!2.41e-09!2;CL:0000038!2.41e-09!2;CL:0000558!2.41e-09!2;CL:0000547!2.41e-09!2;CL:0000549!2.41e-09!2;CL:0000550!2.41e-09!2;CL:0000552!2.41e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:0000764;3.30e-16;2!CL:0000558;3.30e-16;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,3.30e-16,2;CL:0000765,3.30e-16,2;CL:0000050,3.30e-16,2;CL:0000038,3.30e-16,2;CL:0000558,3.30e-16,2;CL:0000547,3.30e-16,2;CL:0000549,3.30e-16,2;CL:0000550,3.30e-16,2;CL:0000552,3.30e-16,2;CL:0000763,1.53e-07,108;CL:0000049,1.53e-07,108 | |||
|ontology_enrichment_development_v019=UBERON:0004140;2.37e-08;1 | |||
|ontology_enrichment_disease=DOID:1036!2.83e-17!8;DOID:8692!1.42e-15!31;DOID:1240!8.00e-12!39;DOID:2531!2.00e-08!51;DOID:0060083!2.00e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:1036;5.32e-23;8!DOID:8692;1.85e-21;31!DOID:1240;3.12e-14;39!DOID:2531;1.94e-09;51!DOID:0060083;1.94e-09;51!DOID:8552;1.10e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,5.45e-23,8;DOID:8692,5.38e-22,31;DOID:1240,3.86e-17,39;DOID:2531,1.04e-12,51;DOID:0060083,1.04e-12,51;DOID:8552,1.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.48e-15!15;UBERON:0000179!6.48e-15!15;UBERON:0000463!6.48e-15!15;UBERON:0000341!1.33e-08!2;UBERON:0007023!5.33e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.03e-16;15!UBERON:0000179;3.03e-16;15!UBERON:0000463;3.03e-16;15!UBERON:0002390;4.56e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.68e-16,15;UBERON:0000179,2.68e-16,15;UBERON:0000463,2.68e-16,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,4.74091352595139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,351.035062510141,267.187030947448,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,3.04468565539302,0,1.70894156152249,1.42939065274673,2.46817363851717,0.648473311192717,0.540031437238115,2.37937552888281,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50565556505718,44.3114636211764,5.67956924799565,0,32.4270111702054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4604163253136,11.279783030859,17.4495655542788,17.6212666324635,43.6433585265626,36.3964765865067,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,2.14987111957524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0.146552233678082,18.550964447711,0,0,0,0,0.320362237703084,11.7903228824749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,9.53976742008942,0,0,0,0,0.730336388246517,0,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5440835294255,0.714193294391221,0,0.248298857183432,0,0.12729431655633,0,0,0.342233301085281,0,0,1.33064142618405,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SPTA1 | |||
}} |
Revision as of 01:04, 12 September 2013
Short description: | p1@SPTA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SPTA1_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 0bp_to_ENST00000467387_5end |
EntrezGene: | SPTA1 |
HGNC: | 11272 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 3.30e-16 | 2 |
erythroblast | 3.30e-16 | 2 |
megakaryocyte-erythroid progenitor cell | 3.30e-16 | 2 |
erythroid progenitor cell | 3.30e-16 | 2 |
reticulocyte | 3.30e-16 | 2 |
proerythroblast | 3.30e-16 | 2 |
basophilic erythroblast | 3.30e-16 | 2 |
polychromatophilic erythroblast | 3.30e-16 | 2 |
orthochromatic erythroblast | 3.30e-16 | 2 |
myeloid cell | 1.53e-07 | 108 |
common myeloid progenitor | 1.53e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
blood | 2.68e-16 | 15 |
haemolymphatic fluid | 2.68e-16 | 15 |
organism substance | 2.68e-16 | 15 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 5.45e-23 | 8 |
myeloid leukemia | 5.38e-22 | 31 |
leukemia | 3.86e-17 | 39 |
hematologic cancer | 1.04e-12 | 51 |
immune system cancer | 1.04e-12 | 51 |
chronic myeloid leukemia | 1.10e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.