FFCP PHASE1:Hg19::chr1:186269246..186269262,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10216|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=9364|TSSclassifier=S|UniProt=Q92954|association_with_transcript=6bp_to_AY653037_5end|coexpression_cluster_id=C287|description=CAGE_peak_4_at_PRG4_5end|id=chr1:186269246..186269262,+|ontology_enrichment_celltype=CL:0000153!1.54e-13!9;CL:0000447!1.54e-13!9;CL:0000667!6.55e-11!6;CL:0000058!6.55e-11!6;CL:0000138!6.55e-11!6;CL:0000569!9.37e-10!4;CL:0000011!9.37e-10!4;CL:0000327!3.17e-08!14|ontology_enrichment_celltype_v019=CL:0000153;2.93e-36;9!CL:0000447;2.93e-36;9!CL:0000138;2.84e-28;6!CL:0000327;1.89e-21;15!CL:0000499;4.55e-18;28!CL:0000214;4.48e-10;3!CL:0000135;1.20e-09;3!CL:0000388;1.20e-09;3!CL:0000151;5.56e-07;36|ontology_enrichment_celltype_v019_2=CL:0000153,3.10e-36,9;CL:0000447,3.10e-36,9;CL:0000058,2.92e-28,6;CL:0000138,2.92e-28,6;CL:0000327,1.95e-21,15;CL:0000499,4.79e-18,28;CL:0000214,4.58e-10,3;CL:0000135,1.28e-09,3;CL:0000388,1.28e-09,3;CL:0000151,1.92e-08,36|ontology_enrichment_development_v019=UBERON:0000358;5.59e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.14e-09!115;UBERON:0002072!1.22e-07!5|ontology_enrichment_uberon_v019=UBERON:0006915;4.48e-10;3!UBERON:0007616;4.48e-10;3!UBERON:0002217;4.48e-10;3!UBERON:0002018;4.48e-10;3!UBERON:0007846;1.20e-09;3!UBERON:0000043;1.20e-09;3!UBERON:0007845;1.20e-09;3!UBERON:0002107;5.87e-09;19!UBERON:0006925;5.87e-09;19!UBERON:0002426;5.59e-08;1!UBERON:0003831;5.59e-08;1!UBERON:0003898;5.59e-08;1!UBERON:0004830;5.59e-08;1!UBERON:0003830;5.59e-08;1!UBERON:0005175;5.59e-08;1!UBERON:0001774;5.59e-08;1!UBERON:0001103;5.59e-08;1!UBERON:0001013;6.93e-08;14!UBERON:0002423;9.58e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0006915,4.58e-10,3;UBERON:0007616,4.58e-10,3;UBERON:0002217,4.58e-10,3;UBERON:0002018,4.58e-10,3;UBERON:0007846,1.28e-09,3;UBERON:0000043,1.28e-09,3;UBERON:0007845,1.28e-09,3;UBERON:0002107,5.49e-09,19;UBERON:0006925,5.49e-09,19;UBERON:0008836,5.49e-09,19;UBERON:0002426,5.40e-08,1;UBERON:0003831,5.40e-08,1;UBERON:0003898,5.40e-08,1;UBERON:0004830,5.40e-08,1;UBERON:0003830,5.40e-08,1;UBERON:0005175,5.40e-08,1;UBERON:0001774,5.40e-08,1;UBERON:0001103,5.40e-08,1;UBERON:0010084,5.40e-08,1;UBERON:0001013,7.06e-08,14;UBERON:0008835,1.00e-07,22;UBERON:0003894,1.00e-07,22;UBERON:0009854,2.23e-07,23;UBERON:0007499,9.11e-07,25;UBERON:0009497,9.11e-07,25;UBERON:0000015,9.11e-07,25;UBERON:0002423,9.11e-07,25;UBERON:0006235,9.11e-07,25;UBERON:0004161,9.11e-07,25|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,0,0,0,0,15.7929968356708,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,2.53007406669196,1.00267582127178,6.22840031531542,14.3151470469198,41.8505988460267,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,8.84544495009863,7.68026878685825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,1.17480694477644,0,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.739144404124282,0,0.697262270759755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,5.59801318031833,0,0,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0,0,0,0,2.19172787076177,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0.19351266257817,0.0730893170861856,0.0821154570532092,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,2.14613024068285,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,9.52589518907536,2.65013777824443,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,5.67168250970121,0,2.21922344601045,0.189403005275089,0.754703705257725,1.77962244319307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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10216 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=9364 | |||
|TSSclassifier=S | |||
|UniProt=Q92954 | |||
|association_with_transcript=6bp_to_AY653037_5end | |||
|coexpression_cluster_id=C287 | |||
|description=CAGE_peak_4_at_PRG4_5end | |||
|id=chr1:186269246..186269262,+ | |||
|ontology_enrichment_celltype=CL:0000153!1.54e-13!9;CL:0000447!1.54e-13!9;CL:0000667!6.55e-11!6;CL:0000058!6.55e-11!6;CL:0000138!6.55e-11!6;CL:0000569!9.37e-10!4;CL:0000011!9.37e-10!4;CL:0000327!3.17e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.93e-36;9!CL:0000447;2.93e-36;9!CL:0000138;2.84e-28;6!CL:0000327;1.89e-21;15!CL:0000499;4.55e-18;28!CL:0000214;4.48e-10;3!CL:0000135;1.20e-09;3!CL:0000388;1.20e-09;3!CL:0000151;5.56e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.10e-36,9;CL:0000447,3.10e-36,9;CL:0000058,2.92e-28,6;CL:0000138,2.92e-28,6;CL:0000327,1.95e-21,15;CL:0000499,4.79e-18,28;CL:0000214,4.58e-10,3;CL:0000135,1.28e-09,3;CL:0000388,1.28e-09,3;CL:0000151,1.92e-08,36 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.59e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.14e-09!115;UBERON:0002072!1.22e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;4.48e-10;3!UBERON:0007616;4.48e-10;3!UBERON:0002217;4.48e-10;3!UBERON:0002018;4.48e-10;3!UBERON:0007846;1.20e-09;3!UBERON:0000043;1.20e-09;3!UBERON:0007845;1.20e-09;3!UBERON:0002107;5.87e-09;19!UBERON:0006925;5.87e-09;19!UBERON:0002426;5.59e-08;1!UBERON:0003831;5.59e-08;1!UBERON:0003898;5.59e-08;1!UBERON:0004830;5.59e-08;1!UBERON:0003830;5.59e-08;1!UBERON:0005175;5.59e-08;1!UBERON:0001774;5.59e-08;1!UBERON:0001103;5.59e-08;1!UBERON:0001013;6.93e-08;14!UBERON:0002423;9.58e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,4.58e-10,3;UBERON:0007616,4.58e-10,3;UBERON:0002217,4.58e-10,3;UBERON:0002018,4.58e-10,3;UBERON:0007846,1.28e-09,3;UBERON:0000043,1.28e-09,3;UBERON:0007845,1.28e-09,3;UBERON:0002107,5.49e-09,19;UBERON:0006925,5.49e-09,19;UBERON:0008836,5.49e-09,19;UBERON:0002426,5.40e-08,1;UBERON:0003831,5.40e-08,1;UBERON:0003898,5.40e-08,1;UBERON:0004830,5.40e-08,1;UBERON:0003830,5.40e-08,1;UBERON:0005175,5.40e-08,1;UBERON:0001774,5.40e-08,1;UBERON:0001103,5.40e-08,1;UBERON:0010084,5.40e-08,1;UBERON:0001013,7.06e-08,14;UBERON:0008835,1.00e-07,22;UBERON:0003894,1.00e-07,22;UBERON:0009854,2.23e-07,23;UBERON:0007499,9.11e-07,25;UBERON:0009497,9.11e-07,25;UBERON:0000015,9.11e-07,25;UBERON:0002423,9.11e-07,25;UBERON:0006235,9.11e-07,25;UBERON:0004161,9.11e-07,25 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,0,0,0,0,15.7929968356708,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,2.53007406669196,1.00267582127178,6.22840031531542,14.3151470469198,41.8505988460267,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,8.84544495009863,7.68026878685825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,1.17480694477644,0,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0.154209693802656,0.355123450626254,0.739144404124282,0,0.697262270759755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88514832613622,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,5.59801318031833,0,0,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0,0,0,0,2.19172787076177,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0.19351266257817,0.0730893170861856,0.0821154570532092,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,2.14613024068285,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,9.52589518907536,2.65013777824443,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,5.67168250970121,0,2.21922344601045,0.189403005275089,0.754703705257725,1.77962244319307,0.686520205190771,0.604923695052956,7.61642282855624,0.147855149989634,0,0,0,1.24411862352257,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.78624198594322,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,1.64260490969995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31087814315709,1.29787968637137,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.286888821570705,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p4@PRG4 | |||
}} |
Revision as of 02:21, 12 September 2013
Short description: | p4@PRG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PRG4_5end |
Coexpression cluster: | C287_Hepatocyte_Chondrocyte_Adipocyte_Synoviocyte_liver_tenocyte_mesenchymal |
Association with transcript: | 6bp_to_AY653037_5end |
EntrezGene: | PRG4 |
HGNC: | 9364 |
UniProt: | Q92954 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.10e-36 | 9 |
carbohydrate secreting cell | 3.10e-36 | 9 |
chondroblast | 2.92e-28 | 6 |
chondrocyte | 2.92e-28 | 6 |
extracellular matrix secreting cell | 1.95e-21 | 15 |
stromal cell | 4.79e-18 | 28 |
synovial cell | 4.58e-10 | 3 |
fibrocyte | 1.28e-09 | 3 |
tendon cell | 1.28e-09 | 3 |
secretory cell | 1.92e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 4.58e-10 | 3 |
layer of synovial tissue | 4.58e-10 | 3 |
synovial joint | 4.58e-10 | 3 |
synovial membrane of synovial joint | 4.58e-10 | 3 |
dense regular connective tissue | 1.28e-09 | 3 |
tendon | 1.28e-09 | 3 |
regular connective tissue | 1.28e-09 | 3 |
liver | 5.49e-09 | 19 |
digestive gland | 5.49e-09 | 19 |
liver bud | 5.49e-09 | 19 |
chest muscle | 5.40e-08 | 1 |
respiratory system muscle | 5.40e-08 | 1 |
skeletal muscle of trunk | 5.40e-08 | 1 |
respiratory system skeletal muscle | 5.40e-08 | 1 |
thoracic segment muscle | 5.40e-08 | 1 |
chest organ | 5.40e-08 | 1 |
muscle of trunk | 5.40e-08 | 1 |
diaphragm | 5.40e-08 | 1 |
future diaphragm | 5.40e-08 | 1 |
adipose tissue | 7.06e-08 | 14 |
hepatic diverticulum | 1.00e-07 | 22 |
liver primordium | 1.00e-07 | 22 |
digestive tract diverticulum | 2.23e-07 | 23 |
epithelial sac | 9.11e-07 | 25 |
epithelium of foregut-midgut junction | 9.11e-07 | 25 |
anatomical boundary | 9.11e-07 | 25 |
hepatobiliary system | 9.11e-07 | 25 |
foregut-midgut junction | 9.11e-07 | 25 |
septum transversum | 9.11e-07 | 25 |
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