FFCP PHASE1:Hg19::chr1:31898628..31898663,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1475|description=CAGE_peak_at_chr1:31898628..31898663,+|id=chr1:31898628..31898663,+|ontology_enrichment_celltype=CL:0000066!3.79e-17!254;CL:0002076!1.02e-13!43;CL:0000223!1.13e-11!59;CL:0002321!1.53e-10!248;CL:0000220!2.02e-10!246;CL:0002159!9.13e-10!13;CL:0002368!3.58e-09!13;CL:0002077!4.83e-09!33;CL:0002251!3.18e-07!21|ontology_enrichment_celltype_v019=CL:0002159;2.26e-16;14!CL:0002368;4.72e-14;13!CL:0002076;2.93e-11;42!CL:0002202;2.57e-10;9!CL:0002632;2.57e-10;9!CL:0000362;1.82e-09;9!CL:0002552;1.43e-08;5!CL:0000244;5.15e-08;4!CL:0000731;5.15e-08;4!CL:0000240;6.89e-08;6!CL:0000311;6.89e-08;6!CL:0000079;6.89e-08;6!CL:0000237;6.89e-08;6!CL:0002077;2.91e-07;34!CL:0002328;5.00e-07;3|ontology_enrichment_celltype_v019_2=CL:0002159,1.12e-16,14;CL:0002076,7.62e-16,42;CL:0002368,5.93e-14,13;CL:0000223,6.84e-11,58;CL:0002202,3.14e-10,9;CL:0002632,3.14e-10,9;CL:0000066,8.43e-10,253;CL:0000362,1.84e-09,9;CL:0002552,1.81e-08,5;CL:0002077,3.36e-08,34;CL:0000240,6.37e-08,6;CL:0000311,6.37e-08,6;CL:0000079,6.37e-08,6;CL:0000237,6.37e-08,6;CL:0000036,6.37e-08,6;CL:0000357,6.37e-08,6;CL:0000114,6.37e-08,6;CL:0000244,7.71e-08,4;CL:0000731,7.71e-08,4;CL:0002328,5.36e-07,3|ontology_enrichment_development_v019=CL:0000357;6.89e-08;6!CL:0000114;6.89e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!4.68e-24!169;UBERON:0000925!4.68e-24!169;UBERON:0006595!4.68e-24!169;UBERON:0001007!1.82e-19!155;UBERON:0001555!1.82e-19!155;UBERON:0007026!1.82e-19!155;UBERON:0000161!4.30e-13!35;UBERON:0004921!6.08e-13!129;UBERON:0004185!6.08e-13!129;UBERON:0002100!1.71e-12!216;UBERON:0001004!4.45e-12!72;UBERON:0003102!1.28e-11!95;UBERON:0003104!2.83e-11!238;UBERON:0009142!2.83e-11!238;UBERON:0000165!9.59e-11!28;UBERON:0000930!9.59e-11!28;UBERON:0000077!1.59e-10!130;UBERON:0001444!3.98e-10!48;UBERON:0000475!7.51e-09!365;UBERON:0000481!1.07e-08!347;UBERON:0000166!1.09e-08!21;UBERON:0009569!1.20e-08!113;UBERON:0005256!3.54e-08!143;UBERON:0000915!3.69e-08!52;UBERON:0000467!7.08e-08!625;UBERON:0007196!7.36e-08!14;UBERON:0001558!7.36e-08!14;UBERON:0000480!9.81e-08!626;UBERON:0005153!1.92e-07!37;UBERON:0001008!1.93e-07!45;UBERON:0000464!3.02e-07!104;UBERON:0006554!3.65e-07!44;UBERON:0000466!4.49e-07!126;UBERON:0000468!5.64e-07!659;UBERON:0000065!7.44e-07!53;UBERON:0005178!9.36e-07!34;UBERON:0002224!9.36e-07!34|ontology_enrichment_uberon_v019=UBERON:0003729;1.01e-16;13!UBERON:0000161;1.79e-14;19!UBERON:0000166;1.79e-14;19!UBERON:0000165;2.34e-13;28!UBERON:0001828;7.71e-13;8!UBERON:0000344;1.73e-11;20!UBERON:0000365;3.66e-09;5!UBERON:0001555;1.23e-08;54!UBERON:0000486;2.23e-08;12!UBERON:0005910;1.54e-07;6!UBERON:0007196;4.76e-07;15!UBERON:0001558;4.76e-07;15!UBERON:0004815;5.00e-07;3!UBERON:0002031;5.00e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0003729,4.75e-17,13;UBERON:0004119,8.43e-16,160;UBERON:0000925,8.43e-16,160;UBERON:0006595,8.43e-16,160;UBERON:0001828,5.50e-13,8;UBERON:0000165,8.54e-13,29;UBERON:0000930,8.54e-13,29;UBERON:0000166,3.69e-12,22;UBERON:0000344,8.81e-12,20;UBERON:0000161,3.15e-11,36;UBERON:0003102,4.62e-11,99;UBERON:0001007,1.09e-10,145;UBERON:0001555,1.09e-10,145;UBERON:0007026,1.09e-10,145;UBERON:0000033,5.60e-10,56;UBERON:0001004,2.85e-09,74;UBERON:0000365,3.99e-09,5;UBERON:0001444,1.14e-08,49;UBERON:0000153,1.97e-08,62;UBERON:0007811,1.97e-08,62;UBERON:0005910,1.65e-07,6;UBERON:0004923,4.07e-07,66;UBERON:0004815,5.36e-07,3;UBERON:0002031,5.36e-07,3;UBERON:0007196,5.63e-07,15;UBERON:0001558,5.63e-07,15|phase1_expression=0.363356758541113,2.5692062866918,0.845726424575827,0,0.446961094427288,2.61701557230111,0,0,0.261185628199839,0.491467873003018,2.09340350391728,0,1.05506791291381,0.123766352960047,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0,0,0,0,0,0.136874425072884,0,0.229240217243854,0.164201178899891,0.236132343941038,0,0,0,8.27479102031034,6.024118375565,7.39508020333575,0.232401601740905,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0,0.464858073811369,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0.398927315243264,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0.378139268656271,0.443458794925128,0.175669571386252,0.130979075497713,1.82147644146271,4.44941331341315,0,0,0.531831842075461,0,0,0,0,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0,0.258416759169329,0,0,0,0.760272105718513,0.24406205754817,0,1.62028389576352,0,0,0.112611480483322,0,0,0.183201743930407,0,0,1.74437620857014,0,0,0,0.286836620748814,0.354668382198357,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1475 | |||
|description=CAGE_peak_at_chr1:31898628..31898663,+ | |||
|id=chr1:31898628..31898663,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.79e-17!254;CL:0002076!1.02e-13!43;CL:0000223!1.13e-11!59;CL:0002321!1.53e-10!248;CL:0000220!2.02e-10!246;CL:0002159!9.13e-10!13;CL:0002368!3.58e-09!13;CL:0002077!4.83e-09!33;CL:0002251!3.18e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.26e-16;14!CL:0002368;4.72e-14;13!CL:0002076;2.93e-11;42!CL:0002202;2.57e-10;9!CL:0002632;2.57e-10;9!CL:0000362;1.82e-09;9!CL:0002552;1.43e-08;5!CL:0000244;5.15e-08;4!CL:0000731;5.15e-08;4!CL:0000240;6.89e-08;6!CL:0000311;6.89e-08;6!CL:0000079;6.89e-08;6!CL:0000237;6.89e-08;6!CL:0002077;2.91e-07;34!CL:0002328;5.00e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.12e-16,14;CL:0002076,7.62e-16,42;CL:0002368,5.93e-14,13;CL:0000223,6.84e-11,58;CL:0002202,3.14e-10,9;CL:0002632,3.14e-10,9;CL:0000066,8.43e-10,253;CL:0000362,1.84e-09,9;CL:0002552,1.81e-08,5;CL:0002077,3.36e-08,34;CL:0000240,6.37e-08,6;CL:0000311,6.37e-08,6;CL:0000079,6.37e-08,6;CL:0000237,6.37e-08,6;CL:0000036,6.37e-08,6;CL:0000357,6.37e-08,6;CL:0000114,6.37e-08,6;CL:0000244,7.71e-08,4;CL:0000731,7.71e-08,4;CL:0002328,5.36e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;6.89e-08;6!CL:0000114;6.89e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.68e-24!169;UBERON:0000925!4.68e-24!169;UBERON:0006595!4.68e-24!169;UBERON:0001007!1.82e-19!155;UBERON:0001555!1.82e-19!155;UBERON:0007026!1.82e-19!155;UBERON:0000161!4.30e-13!35;UBERON:0004921!6.08e-13!129;UBERON:0004185!6.08e-13!129;UBERON:0002100!1.71e-12!216;UBERON:0001004!4.45e-12!72;UBERON:0003102!1.28e-11!95;UBERON:0003104!2.83e-11!238;UBERON:0009142!2.83e-11!238;UBERON:0000165!9.59e-11!28;UBERON:0000930!9.59e-11!28;UBERON:0000077!1.59e-10!130;UBERON:0001444!3.98e-10!48;UBERON:0000475!7.51e-09!365;UBERON:0000481!1.07e-08!347;UBERON:0000166!1.09e-08!21;UBERON:0009569!1.20e-08!113;UBERON:0005256!3.54e-08!143;UBERON:0000915!3.69e-08!52;UBERON:0000467!7.08e-08!625;UBERON:0007196!7.36e-08!14;UBERON:0001558!7.36e-08!14;UBERON:0000480!9.81e-08!626;UBERON:0005153!1.92e-07!37;UBERON:0001008!1.93e-07!45;UBERON:0000464!3.02e-07!104;UBERON:0006554!3.65e-07!44;UBERON:0000466!4.49e-07!126;UBERON:0000468!5.64e-07!659;UBERON:0000065!7.44e-07!53;UBERON:0005178!9.36e-07!34;UBERON:0002224!9.36e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0003729;1.01e-16;13!UBERON:0000161;1.79e-14;19!UBERON:0000166;1.79e-14;19!UBERON:0000165;2.34e-13;28!UBERON:0001828;7.71e-13;8!UBERON:0000344;1.73e-11;20!UBERON:0000365;3.66e-09;5!UBERON:0001555;1.23e-08;54!UBERON:0000486;2.23e-08;12!UBERON:0005910;1.54e-07;6!UBERON:0007196;4.76e-07;15!UBERON:0001558;4.76e-07;15!UBERON:0004815;5.00e-07;3!UBERON:0002031;5.00e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003729,4.75e-17,13;UBERON:0004119,8.43e-16,160;UBERON:0000925,8.43e-16,160;UBERON:0006595,8.43e-16,160;UBERON:0001828,5.50e-13,8;UBERON:0000165,8.54e-13,29;UBERON:0000930,8.54e-13,29;UBERON:0000166,3.69e-12,22;UBERON:0000344,8.81e-12,20;UBERON:0000161,3.15e-11,36;UBERON:0003102,4.62e-11,99;UBERON:0001007,1.09e-10,145;UBERON:0001555,1.09e-10,145;UBERON:0007026,1.09e-10,145;UBERON:0000033,5.60e-10,56;UBERON:0001004,2.85e-09,74;UBERON:0000365,3.99e-09,5;UBERON:0001444,1.14e-08,49;UBERON:0000153,1.97e-08,62;UBERON:0007811,1.97e-08,62;UBERON:0005910,1.65e-07,6;UBERON:0004923,4.07e-07,66;UBERON:0004815,5.36e-07,3;UBERON:0002031,5.36e-07,3;UBERON:0007196,5.63e-07,15;UBERON:0001558,5.63e-07,15 | |||
|phase1_expression=0.363356758541113,2.5692062866918,0.845726424575827,0,0.446961094427288,2.61701557230111,0,0,0.261185628199839,0.491467873003018,2.09340350391728,0,1.05506791291381,0.123766352960047,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0,0,0,0,0,0.136874425072884,0,0.229240217243854,0.164201178899891,0.236132343941038,0,0,0,8.27479102031034,6.024118375565,7.39508020333575,0.232401601740905,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0,0.464858073811369,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0.398927315243264,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0.378139268656271,0.443458794925128,0.175669571386252,0.130979075497713,1.82147644146271,4.44941331341315,0,0,0.531831842075461,0,0,0,0,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0,0.258416759169329,0,0,0,0.760272105718513,0.24406205754817,0,1.62028389576352,0,0,0.112611480483322,0,0,0.183201743930407,0,0,1.74437620857014,0,0,0,0.286836620748814,0.354668382198357,0,0,0.74000264525148,0,0.134710672069688,0,0.151357427644931,0,0.468642863667593,3.1216007683032,0,0.149448680551801,0.704606991862589,0.323745888736263,0.140450806702248,1.22492502752936,2.45668634623536,1.34323515528495,3.56400857184616,2.47266929278557,1.82032272387605,2.87447256726495,0.336672227908132,0.750711119231785,1.10825646193673,0.438977620880838,2.45190236639216,0.150238058906597,0,0,0.427114777637135,0,0,0.206105058476878,0,0,0.168776332241266,0.389748020644795,0,0.184099797284599,0,0.355009592516614,0.10075209822764,0.508681776931463,2.89891279744945,3.81844568827169,1.72082757233402,0.243947412259191,0.132529768321485,0.116193942869518,0.518305275076852,0.252320850875628,0.36497735907583,0,0.643240938192885,0,1.39310378409594,0.721879481669586,0.236613600079688,0.505754070234305,0.482022059766964,0.661763836394364,0.217879444092406,0.237270619111097,0.404493924480493,0.392442930250692,0,0.738155454624648,0,0,0,0,7.86261773342101,0,0,0.860919069801795,0.171567810298526,6.47526683910891,5.62008766288098,2.41269533787914,2.4998880192803,0.325808305310325,0,1.44331342025273,0.231860809950154,0.117408694235822,0.144366447761074,0.462985512576611,0.570762456703795,0.790204397959275,0,0,0,0.297262324577456,2.81201501960331,3.52762469217605,1.70130116690864,0.895585227028483,1.45316969256981,3.06706143332169,0,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0.763976851116555,1.17217447210047,0,0.411309970813294,0,0,0.112131084345361,0.43596006883328,0,0.129271715757778,0,0,0.797814349754612,1.04007436911366,1.28603687131071,0,1.5985330740966,0.285955987316295,0,0,0.65147236858747,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,1.15825045334063,1.2328579353023,0.179060963239896,0,0,0,0,0.508189248444927,0,0,0,0.637938751653163,0,0,0,0.36807447515742,0,0,0,1.60586089917446,0.473107245101804,0.234282829985426,0,4.5481500811197,1.03473071292505,0,0.553107505625109,0.955719759148911,0.391602314925481,0.343143423810856,0,0,0,1.21251028578504,0,2.41912234663744,0.496215615637554,0,1.68396056659844,1.15325234330131,0.511707249066704,1.60853921143608,1.48418066444991,0.308419387605311,0.532685175939381,0.410635780069046,9.34657972530518,0.929683027679674,0.725156697549733,10.6268429260741,6.07734526976916,0.68888668898764,2.91345868810747,0.917870904715969,1.35359883872224,0.616122696835318,2.35304930753057,0,0.422206515571503,0,0.170093705276516,0.215915916102139,0,0.541892875087706,1.00337954770971,0,0,0.223874754722178,0,0,0.769350375349168,0,0.650756789328606,0.206082023295445,0.183138929636687,0,2.29706215198469,14.95138565884,0,0.386682873168488,0.154048617114644,0,0.551346289938122,0.107420244868274,0.290033387828457,0.255679882248303,0.534192213880424,7.76839102196597,10.1860735703506,0.638063562472921,7.08104465988849,0.929691098594572,0.31481234683064,0,0,0,1.73986598415015,0,0,0,0,0.190630193923825,0.511795582622668,0.42793898803392,0,0,1.43897966066652,1.09814811894422,1.17812402345686,0.606547444719948,0,0,0.48763373908959,0.243713489631284,2.11300293513511,0.545999645631943,0.424216295861138,0,0.551365343546124,1.32687795048244,3.06915619677634,0.578775534266688,1.31178950409327,0.202910376962704,0.30982349809975,0,0,0,0,0.709522128141196,0,0,0.379473173765715,0,2.11688647996127,5.3624182042863,6.53345909167936,1.12972560932135,4.3050537267123,8.42357378338128,5.76459199597678,1.1486170010348,0,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0.425846237690326,0,0,0.223676107892416,0,0,0,1.23087398947712,0,0,0,0.935702702041099,0,0,0,5.11445064251544,0.95497793895076,0,0.307160702099232,0,0,0.111308705022906,0,0,0,0.552567831062295,0,0.102268682502155,0.369254416383208,0,0.179736702294654,0,0,0.690503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| |||
|short_description=p@chr1:31898628..31898663,+ | |||
}} |
Revision as of 05:14, 12 September 2013
Short description: | p@chr1:31898628..31898663, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:31898628..31898663, + |
Coexpression cluster: | C1475_Sebocyte_Prostate_Tracheal_Bronchial_Preadipocyte_Urothelial_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.12e-16 | 14 |
endo-epithelial cell | 7.62e-16 | 42 |
respiratory epithelial cell | 5.93e-14 | 13 |
endodermal cell | 6.84e-11 | 58 |
epithelial cell of tracheobronchial tree | 3.14e-10 | 9 |
epithelial cell of lower respiratory tract | 3.14e-10 | 9 |
epithelial cell | 8.43e-10 | 253 |
epidermal cell | 1.84e-09 | 9 |
fibroblast of gingiva | 1.81e-08 | 5 |
ecto-epithelial cell | 3.36e-08 | 34 |
stratified squamous epithelial cell | 6.37e-08 | 6 |
keratin accumulating cell | 6.37e-08 | 6 |
stratified epithelial cell | 6.37e-08 | 6 |
keratinizing barrier epithelial cell | 6.37e-08 | 6 |
epithelial fate stem cell | 6.37e-08 | 6 |
stratified epithelial stem cell | 6.37e-08 | 6 |
surface ectodermal cell | 6.37e-08 | 6 |
transitional epithelial cell | 7.71e-08 | 4 |
urothelial cell | 7.71e-08 | 4 |
bronchial epithelial cell | 5.36e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mouth mucosa | 4.75e-17 | 13 |
endoderm-derived structure | 8.43e-16 | 160 |
endoderm | 8.43e-16 | 160 |
presumptive endoderm | 8.43e-16 | 160 |
gingiva | 5.50e-13 | 8 |
mouth | 8.54e-13 | 29 |
stomodeum | 8.54e-13 | 29 |
oral opening | 3.69e-12 | 22 |
mucosa | 8.81e-12 | 20 |
orifice | 3.15e-11 | 36 |
surface structure | 4.62e-11 | 99 |
digestive system | 1.09e-10 | 145 |
digestive tract | 1.09e-10 | 145 |
primitive gut | 1.09e-10 | 145 |
head | 5.60e-10 | 56 |
respiratory system | 2.85e-09 | 74 |
urothelium | 3.99e-09 | 5 |
subdivision of head | 1.14e-08 | 49 |
anterior region of body | 1.97e-08 | 62 |
craniocervical region | 1.97e-08 | 62 |
transitional epithelium | 1.65e-07 | 6 |
organ component layer | 4.07e-07 | 66 |
lower respiratory tract epithelium | 5.36e-07 | 3 |
epithelium of bronchus | 5.36e-07 | 3 |
tracheobronchial tree | 5.63e-07 | 15 |
lower respiratory tract | 5.63e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.