FFCP PHASE1:Hg19::chr20:62368028..62368039,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54923|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26016|TSSclassifier=S|UniProt=|association_with_transcript=7bp_to_ENST00000480139_5end|coexpression_cluster_id=C974|description=CAGE_peak_4_at_LIME1_5end|id=chr20:62368028..62368039,+|ontology_enrichment_celltype=CL:0000542!9.12e-40!53;CL:0000051!9.12e-40!53;CL:0000838!9.01e-39!52;CL:0000791!1.51e-23!18;CL:0000789!1.51e-23!18;CL:0002420!1.51e-23!18;CL:0002419!1.51e-23!18;CL:0000790!1.51e-23!18;CL:0000084!3.07e-23!25;CL:0000827!3.07e-23!25;CL:0000738!3.11e-22!140;CL:0002087!3.85e-20!119;CL:0000037!1.29e-17!172;CL:0000566!1.29e-17!172;CL:0002031!2.82e-16!124;CL:0000988!1.78e-15!182;CL:0000625!2.12e-15!11;CL:0000945!1.33e-13!24;CL:0000826!1.33e-13!24;CL:0002032!1.48e-13!165;CL:0000837!1.48e-13!165;CL:0000624!7.01e-09!6|ontology_enrichment_celltype_v019=CL:0000084;9.79e-41;25!CL:0000791;4.39e-40;18!CL:0000789;4.39e-40;18!CL:0002419;4.39e-40;18!CL:0000625;9.01e-26;11!CL:0000542;6.92e-20;53!CL:0000624;2.35e-14;6!CL:0000784;9.88e-09;3!CL:0000898;2.39e-08;3!CL:0000623;8.08e-08;3!CL:0000226;3.07e-07;3!CL:0000842;3.07e-07;3|ontology_enrichment_celltype_v019_2=CL:0000084,9.25e-41,25;CL:0000827,9.25e-41,25;CL:0000791,3.84e-40,18;CL:0000789,3.84e-40,18;CL:0002420,3.84e-40,18;CL:0002419,3.84e-40,18;CL:0000790,3.84e-40,18;CL:0000542,1.07e-37,53;CL:0000051,1.07e-37,53;CL:0000838,3.49e-36,52;CL:0000625,8.32e-26,11;CL:0000738,5.22e-21,136;CL:0002087,8.89e-19,115;CL:0000037,1.08e-15,168;CL:0000624,2.25e-14,6;CL:0000988,2.73e-14,177;CL:0002031,2.92e-13,120;CL:0002032,3.26e-11,161;CL:0000837,3.26e-11,161;CL:0000784,9.53e-09,3;CL:0000898,2.45e-08,3;CL:0000623,7.90e-08,3;CL:0000825,7.90e-08,3;CL:0000226,2.98e-07,3;CL:0000842,2.98e-07,3|ontology_enrichment_development_v019=CL:0000790;4.39e-40;18!CL:0000051;6.92e-20;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.07e-15!115;UBERON:0000178!5.67e-11!15;UBERON:0000179!5.67e-11!15;UBERON:0000463!5.67e-11!15|ontology_enrichment_uberon_v019=UBERON:0000178;4.63e-19;15!UBERON:0000179;4.63e-19;15!UBERON:0000463;4.63e-19;15!UBERON:0002390;1.22e-12;32!UBERON:0002193;3.20e-09;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.05e-19,15;UBERON:0000179,5.05e-19,15;UBERON:0000463,5.05e-19,15;UBERON:0002370,3.04e-09,4;UBERON:0005058,3.04e-09,4;UBERON:0009113,3.04e-09,4;UBERON:0003295,3.04e-09,4;UBERON:0005562,3.04e-09,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.328402357799783,0.787107813136792,2.36018566109342,2.68680578668049,1.70297735647684,0,0,0,0.46480320348181,0.710846162437108,0.293600439334847,0.553995408531877,1.20326668482085,3.03815219002193,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0.889509253863555,3.41384178053206,1.20118796110804,0,2.64417949113945,0.954053754535364,0,1.17447437874188,0.764546456250458,0,2.24203425192614,1.84368859342554,5.90129310341499,12.1833336452241,9.66327045297693,20.229565942272,10.1035902656413,10.8892995318989,9.74133642039557,15.2632325932688,25.0415021353612,26.1409995608673,22.4767206924963,14.8585930881783,14.8267656218261,4.43982342429925,4.42160028457357,8.40428948631652,10.0834862950201,8.29376567078111,13.589618094647,22.6618685395132,18.0113631992903,20.6176467289578,13.1570239850141,17.8396632021494,18.8814201618361,9.50452044448374,22.7368429807437,23.4215498412586,14.9916871862815,15.6272986349051,20.5281999230262,12.2980113367087,13.6394499849589,9.26876184849914,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0,0,32.4347249055265,22.8797964312051,30.0880576076948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,1.96565443335525,1.77236972004421,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2329365839288,11.4277840917118,10.1344960183973,7.7005821767849,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.99627275756373,3.23571301227925,7.36420148843766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,5.66725564062472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.90807926524945,0,0,0,0,9.13405696617905,4.58782324285425,6.83576624608995,7.86164859010704,5.34770955012053,5.18778648954174,8.64050299580984,7.13812658664843,0,0,0,2.22963810150862,0,3.98394322751119,5.42049327277996,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,2.22886768554957,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54923 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENST00000480139_5end | |||
|coexpression_cluster_id=C974 | |||
|description=CAGE_peak_4_at_LIME1_5end | |||
|id=chr20:62368028..62368039,+ | |||
|ontology_enrichment_celltype=CL:0000542!9.12e-40!53;CL:0000051!9.12e-40!53;CL:0000838!9.01e-39!52;CL:0000791!1.51e-23!18;CL:0000789!1.51e-23!18;CL:0002420!1.51e-23!18;CL:0002419!1.51e-23!18;CL:0000790!1.51e-23!18;CL:0000084!3.07e-23!25;CL:0000827!3.07e-23!25;CL:0000738!3.11e-22!140;CL:0002087!3.85e-20!119;CL:0000037!1.29e-17!172;CL:0000566!1.29e-17!172;CL:0002031!2.82e-16!124;CL:0000988!1.78e-15!182;CL:0000625!2.12e-15!11;CL:0000945!1.33e-13!24;CL:0000826!1.33e-13!24;CL:0002032!1.48e-13!165;CL:0000837!1.48e-13!165;CL:0000624!7.01e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;9.79e-41;25!CL:0000791;4.39e-40;18!CL:0000789;4.39e-40;18!CL:0002419;4.39e-40;18!CL:0000625;9.01e-26;11!CL:0000542;6.92e-20;53!CL:0000624;2.35e-14;6!CL:0000784;9.88e-09;3!CL:0000898;2.39e-08;3!CL:0000623;8.08e-08;3!CL:0000226;3.07e-07;3!CL:0000842;3.07e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,9.25e-41,25;CL:0000827,9.25e-41,25;CL:0000791,3.84e-40,18;CL:0000789,3.84e-40,18;CL:0002420,3.84e-40,18;CL:0002419,3.84e-40,18;CL:0000790,3.84e-40,18;CL:0000542,1.07e-37,53;CL:0000051,1.07e-37,53;CL:0000838,3.49e-36,52;CL:0000625,8.32e-26,11;CL:0000738,5.22e-21,136;CL:0002087,8.89e-19,115;CL:0000037,1.08e-15,168;CL:0000624,2.25e-14,6;CL:0000988,2.73e-14,177;CL:0002031,2.92e-13,120;CL:0002032,3.26e-11,161;CL:0000837,3.26e-11,161;CL:0000784,9.53e-09,3;CL:0000898,2.45e-08,3;CL:0000623,7.90e-08,3;CL:0000825,7.90e-08,3;CL:0000226,2.98e-07,3;CL:0000842,2.98e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.39e-40;18!CL:0000051;6.92e-20;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.07e-15!115;UBERON:0000178!5.67e-11!15;UBERON:0000179!5.67e-11!15;UBERON:0000463!5.67e-11!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.63e-19;15!UBERON:0000179;4.63e-19;15!UBERON:0000463;4.63e-19;15!UBERON:0002390;1.22e-12;32!UBERON:0002193;3.20e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.05e-19,15;UBERON:0000179,5.05e-19,15;UBERON:0000463,5.05e-19,15;UBERON:0002370,3.04e-09,4;UBERON:0005058,3.04e-09,4;UBERON:0009113,3.04e-09,4;UBERON:0003295,3.04e-09,4;UBERON:0005562,3.04e-09,4 | |||
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|short_description=p4@LIME1 | |||
}} |
Revision as of 09:38, 12 September 2013
Short description: | p4@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LIME1_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | 7bp_to_ENST00000480139_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 9.25e-41 | 25 |
pro-T cell | 9.25e-41 | 25 |
mature alpha-beta T cell | 3.84e-40 | 18 |
alpha-beta T cell | 3.84e-40 | 18 |
immature T cell | 3.84e-40 | 18 |
mature T cell | 3.84e-40 | 18 |
immature alpha-beta T cell | 3.84e-40 | 18 |
lymphocyte | 1.07e-37 | 53 |
common lymphoid progenitor | 1.07e-37 | 53 |
lymphoid lineage restricted progenitor cell | 3.49e-36 | 52 |
CD8-positive, alpha-beta T cell | 8.32e-26 | 11 |
leukocyte | 5.22e-21 | 136 |
nongranular leukocyte | 8.89e-19 | 115 |
hematopoietic stem cell | 1.08e-15 | 168 |
CD4-positive, alpha-beta T cell | 2.25e-14 | 6 |
hematopoietic cell | 2.73e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 2.92e-13 | 120 |
hematopoietic oligopotent progenitor cell | 3.26e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.26e-11 | 161 |
plasmacytoid dendritic cell | 9.53e-09 | 3 |
naive T cell | 2.45e-08 | 3 |
natural killer cell | 7.90e-08 | 3 |
pro-NK cell | 7.90e-08 | 3 |
single nucleate cell | 2.98e-07 | 3 |
mononuclear cell | 2.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.05e-19 | 15 |
haemolymphatic fluid | 5.05e-19 | 15 |
organism substance | 5.05e-19 | 15 |
thymus | 3.04e-09 | 4 |
hemolymphoid system gland | 3.04e-09 | 4 |
thymic region | 3.04e-09 | 4 |
pharyngeal gland | 3.04e-09 | 4 |
thymus primordium | 3.04e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.