FFCP PHASE1:Hg19::chr21:40032558..40032578,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2078|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3446|TSSclassifier=S|UniProt=P11308,B4DVX5|association_with_transcript=12bp_to_ENST00000398919,NM_001243428,uc010gnw.2,uc010gnx.2_5end|coexpression_cluster_id=C4077|description=CAGE_peak_5_at_ERG_5end|id=chr21:40032558..40032578,-|ontology_enrichment_celltype=CL:0000153!1.63e-10!9;CL:0000447!1.63e-10!9;CL:0000667!1.21e-08!6;CL:0000058!1.21e-08!6;CL:0000138!1.21e-08!6|ontology_enrichment_celltype_v019=CL:0000153;7.13e-42;9!CL:0000447;7.13e-42;9!CL:0000138;7.57e-33;6!CL:0000327;7.49e-25;15!CL:0000499;5.85e-13;28!CL:0000214;3.08e-11;3!CL:0000151;1.68e-08;36|ontology_enrichment_celltype_v019_2=CL:0000153,3.67e-42,9;CL:0000447,3.67e-42,9;CL:0000058,5.48e-33,6;CL:0000138,5.48e-33,6;CL:0000327,5.06e-25,15;CL:0000499,4.78e-13,28;CL:0000214,2.26e-11,3;CL:0000151,5.74e-10,36|ontology_enrichment_development_v019=UBERON:0010115;6.72e-09;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4235;6.72e-09;1|ontology_enrichment_disease_v019_2=DOID:4235,6.22e-09,1|ontology_enrichment_uberon=UBERON:0007023!5.33e-20!115|ontology_enrichment_uberon_v019=UBERON:0006915;3.08e-11;3!UBERON:0007616;3.08e-11;3!UBERON:0002217;3.08e-11;3!UBERON:0002018;3.08e-11;3!UBERON:0002146;2.50e-09;1!UBERON:0005623;2.50e-09;1!UBERON:0002363;6.72e-09;1!UBERON:0004457;3.29e-08;9!UBERON:0000042;3.29e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0006915,2.26e-11,3;UBERON:0007616,2.26e-11,3;UBERON:0002217,2.26e-11,3;UBERON:0002018,2.26e-11,3;UBERON:0002146,2.82e-09,1;UBERON:0005623,2.82e-09,1;UBERON:0002363,9.17e-09,1;UBERON:0007645,9.17e-09,1;UBERON:0007647,9.17e-09,1;UBERON:0010115,9.17e-09,1|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,1.10799081706375,0,0.217010870715852,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,6.51739283826656,2.60723734129483,11.1340032587154,18.0054902011975,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18143432568886,0.487185025805993,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0.561320188866147,0,1.02341449813341,0,0,0,0.355123450626254,0.164254312027618,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0,0,0,0,0,0,1.89996871767898,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48171507906718,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05562704063997,25.9022384726391,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,1.44999915086959,0.227586896570999,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0.435753854075961,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32777279484182,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,1.80784592624426,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,4.80465994013501,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0.558564802544508,4.12488763221031,0,0.199679000498991,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.533937062838473,0.628817220398664,0.414239055347196,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.568209015825267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0.550285795565037,0.231051332300676,0,0,0,0,0.80682027481408,0,0,0,0,0.0675375846183947,0,0.413373593002368,0.19024743058172,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0.227662191351298,0.0887023701626388,0,0,0.135939465953663,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0.0852134047591577,0.423387050190929,0,0,0,0,0,0,0,0,0,0.485710993059139,0.701818390386317,0,0,0,0,0.905777061400041,0,0,0,0.245148321753905,0,0.196308467114945,0,0,1.35941691750254,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,2.52434499509095,0.0679914901909147,0,0,0.371995018166751,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0.303114792872958,0.267964130156178,0,0,0.213233981900981,1.1903221573187,0.0645889098360061,0.186224142887574,0,0.12729431655633,0.202117188958219,0.217716747896961,0,0.202056159043763,0.358611026963382,2.99394320891412,0,0,0,0,0,0.366724332548599,0,0,0.805095174364105,0|short_description=p5@ERG}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2078 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3446 | |||
|TSSclassifier=S | |||
|UniProt=P11308,B4DVX5 | |||
|association_with_transcript=12bp_to_ENST00000398919,NM_001243428,uc010gnw.2,uc010gnx.2_5end | |||
|coexpression_cluster_id=C4077 | |||
|description=CAGE_peak_5_at_ERG_5end | |||
|id=chr21:40032558..40032578,- | |||
|ontology_enrichment_celltype=CL:0000153!1.63e-10!9;CL:0000447!1.63e-10!9;CL:0000667!1.21e-08!6;CL:0000058!1.21e-08!6;CL:0000138!1.21e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;7.13e-42;9!CL:0000447;7.13e-42;9!CL:0000138;7.57e-33;6!CL:0000327;7.49e-25;15!CL:0000499;5.85e-13;28!CL:0000214;3.08e-11;3!CL:0000151;1.68e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.67e-42,9;CL:0000447,3.67e-42,9;CL:0000058,5.48e-33,6;CL:0000138,5.48e-33,6;CL:0000327,5.06e-25,15;CL:0000499,4.78e-13,28;CL:0000214,2.26e-11,3;CL:0000151,5.74e-10,36 | |||
|ontology_enrichment_development_v019=UBERON:0010115;6.72e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4235;6.72e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,6.22e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.33e-20!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;3.08e-11;3!UBERON:0007616;3.08e-11;3!UBERON:0002217;3.08e-11;3!UBERON:0002018;3.08e-11;3!UBERON:0002146;2.50e-09;1!UBERON:0005623;2.50e-09;1!UBERON:0002363;6.72e-09;1!UBERON:0004457;3.29e-08;9!UBERON:0000042;3.29e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,2.26e-11,3;UBERON:0007616,2.26e-11,3;UBERON:0002217,2.26e-11,3;UBERON:0002018,2.26e-11,3;UBERON:0002146,2.82e-09,1;UBERON:0005623,2.82e-09,1;UBERON:0002363,9.17e-09,1;UBERON:0007645,9.17e-09,1;UBERON:0007647,9.17e-09,1;UBERON:0010115,9.17e-09,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,1.10799081706375,0,0.217010870715852,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,6.51739283826656,2.60723734129483,11.1340032587154,18.0054902011975,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18143432568886,0.487185025805993,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0.561320188866147,0,1.02341449813341,0,0,0,0.355123450626254,0.164254312027618,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0,0,0,0,0,0,1.89996871767898,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48171507906718,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05562704063997,25.9022384726391,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,1.44999915086959,0.227586896570999,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0.435753854075961,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32777279484182,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,1.80784592624426,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,4.80465994013501,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0.558564802544508,4.12488763221031,0,0.199679000498991,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.533937062838473,0.628817220398664,0.414239055347196,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.568209015825267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0.550285795565037,0.231051332300676,0,0,0,0,0.80682027481408,0,0,0,0,0.0675375846183947,0,0.413373593002368,0.19024743058172,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0.227662191351298,0.0887023701626388,0,0,0.135939465953663,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0.0852134047591577,0.423387050190929,0,0,0,0,0,0,0,0,0,0.485710993059139,0.701818390386317,0,0,0,0,0.905777061400041,0,0,0,0.245148321753905,0,0.196308467114945,0,0,1.35941691750254,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,2.52434499509095,0.0679914901909147,0,0,0.371995018166751,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0.303114792872958,0.267964130156178,0,0,0.213233981900981,1.1903221573187,0.0645889098360061,0.186224142887574,0,0.12729431655633,0.202117188958219,0.217716747896961,0,0.202056159043763,0.358611026963382,2.99394320891412,0,0,0,0,0,0.366724332548599,0,0,0.805095174364105,0 | |||
|short_description=p5@ERG | |||
}} |
Revision as of 10:23, 12 September 2013
Short description: | p5@ERG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ERG_5end |
Coexpression cluster: | C4077_aorta_Chondrocyte_colon_trachea_gastrointestinal_heart_synovial |
Association with transcript: | 12bp_to_ENST00000398919, NM_001243428, uc010gnw.2, uc010gnx.2_5end |
EntrezGene: | ERG |
HGNC: | 3446 |
UniProt: | P11308B4DVX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.67e-42 | 9 |
carbohydrate secreting cell | 3.67e-42 | 9 |
chondroblast | 5.48e-33 | 6 |
chondrocyte | 5.48e-33 | 6 |
extracellular matrix secreting cell | 5.06e-25 | 15 |
stromal cell | 4.78e-13 | 28 |
synovial cell | 2.26e-11 | 3 |
secretory cell | 5.74e-10 | 36 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 2.26e-11 | 3 |
layer of synovial tissue | 2.26e-11 | 3 |
synovial joint | 2.26e-11 | 3 |
synovial membrane of synovial joint | 2.26e-11 | 3 |
pulmonary valve | 2.82e-09 | 1 |
semi-lunar valve | 2.82e-09 | 1 |
dura mater | 9.17e-09 | 1 |
future meninx | 9.17e-09 | 1 |
ectomeninx | 9.17e-09 | 1 |
future dura mater | 9.17e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 6.22e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.