FFCP PHASE1:Hg19::chr22:29108124..29108188,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11200|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16627|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000464581_5end|description=CAGE_peak_4_at_CHEK2_5end|id=chr22:29108124..29108188,-|ontology_enrichment_celltype=CL:0000055!5.00e-15!180;CL:0000680!1.10e-11!57;CL:0000056!1.10e-11!57;CL:0000355!1.10e-11!57;CL:0000057!1.15e-11!75;CL:0000187!5.33e-10!54;CL:0000192!5.99e-09!42;CL:0000514!5.99e-09!42;CL:0000183!3.41e-08!59;CL:0000393!7.07e-08!60;CL:0000211!7.07e-08!60|ontology_enrichment_celltype_v019=CL:0000153;3.11e-09;9!CL:0000447;3.11e-09;9!CL:0000499;7.10e-08;28!CL:0002504;7.81e-08;3!CL:1000279;7.81e-08;3!CL:1000280;7.81e-08;3!CL:0000515;6.88e-07;3!CL:0000327;9.69e-07;15|ontology_enrichment_celltype_v019_2=CL:0000153,3.06e-09,9;CL:0000447,3.06e-09,9;CL:0000680,4.78e-09,58;CL:0000056,4.78e-09,58;CL:0000355,4.78e-09,58;CL:0000192,1.95e-08,43;CL:0000514,1.95e-08,43;CL:0000499,7.85e-08,28;CL:0002504,8.67e-08,3;CL:1000279,8.67e-08,3;CL:1000280,8.67e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002385!2.59e-11!63;UBERON:0001015!2.59e-11!63;UBERON:0000383!2.59e-11!63;UBERON:0001134!1.05e-10!61;UBERON:0002036!1.05e-10!61;UBERON:0003082!1.05e-10!61;UBERON:0004290!3.87e-10!70;UBERON:0000914!4.37e-10!83;UBERON:0002329!4.37e-10!83;UBERON:0003077!4.37e-10!83;UBERON:0003059!4.37e-10!83;UBERON:0007282!4.37e-10!83;UBERON:0009618!4.37e-10!83;UBERON:0007285!4.37e-10!83;UBERON:0003104!1.45e-08!238;UBERON:0009142!1.45e-08!238;UBERON:0000486!3.00e-08!82;UBERON:0005256!5.16e-08!143;UBERON:0000490!1.20e-07!138;UBERON:0000481!1.75e-07!347;UBERON:0002100!5.96e-07!216;UBERON:0001737!7.90e-07!9|ontology_enrichment_uberon_v019=UBERON:0004457;4.22e-11;9!UBERON:0000042;4.22e-11;9!UBERON:0003688;2.12e-08;6!UBERON:0002358;2.12e-08;6!UBERON:0003684;2.12e-08;6!UBERON:0001178;2.12e-08;6!UBERON:0002367;7.65e-07;11!UBERON:0010147;7.65e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.56e-08,6;UBERON:0002358,2.56e-08,6;UBERON:0003684,2.56e-08,6;UBERON:0001178,2.56e-08,6;UBERON:0001134,3.75e-08,62;UBERON:0002036,3.75e-08,62;UBERON:0003082,3.75e-08,62;UBERON:0004457,5.74e-08,12;UBERON:0000042,5.74e-08,12;UBERON:0002385,9.48e-08,64;UBERON:0001015,9.48e-08,64;UBERON:0000383,9.48e-08,64;UBERON:0002367,8.30e-07,11;UBERON:0010147,8.30e-07,11;UBERON:0009846,8.30e-07,11;UBERON:0003353,8.30e-07,11;UBERON:0004902,8.30e-07,11;UBERON:0003820,8.30e-07,11;UBERON:0009847,8.30e-07,11|phase1_expression=1.99846217197612,0.642301571672949,1.69145284915165,0,2.68176656656373,2.61701557230111,0,0.631719873426831,1.82829939739887,0,0,0,0,0.618831764800233,0.662794751455832,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,3.2529523714611,8.02140657017423,7.24232594804119,0,1.45990461090791,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,1.98613771219828,0.860509862246441,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0,0.163461903113459,0.454072282934794,0,0.937285727335186,0,0.570471821544449,0.448346041655403,0.23486899728753,0,0,0.816616685019573,0,0.723280468230358,1.18800285728205,1.7308685049499,0.910161361938026,0.718618141816238,0,0,0,0.877955241761676,0.30648779579902,3.75595147266492,0.113432183160021,0.179389635688862,1.06778694409284,0.635795703478686,0,0.515262646192195,0.257640540045629,0,0,1.16924406193438,1.7670364197088,0.828449087780694,2.58633690910099,0.355009592516614,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,1.85747171212792,5.0531563716871,2.24782920075703,0.505754070234305,0.723033089650446,2.09558548191549,1.30727666455444,0.237270619111097,0.808987848960987,1.17732879075208,1.92373578473195,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0.514703430895577,0,0,0,0,2.28065813717227,0,2.88662684050547,1.04337364477569,1.6437217193015,0,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,1.30788020649984,0.07333828582095,2.58543431515556,0,0,0.531876233169741,0,0.257207374262142,0,0.266422179016099,0.57191197463259,2.71310802695722,1.64648067356154,0,0.710783897485092,0,1.80863626235752,0.871533458600294,1.3996218765488,0,0,0,0.239624855491583,1.14861935834114,0,2.17171960001369,1.43833425785268,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.542530047399471,0.623912584592421,0.178428988797162,0.473107245101804,0.468565659970853,1.20378439891088,0,1.03473071292505,0,0.184369168541703,0.781952530212746,0,0,0,0,0,0,0,0,2.97729369382532,1.53461973288062,0.561320188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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11200 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16627 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000464581_5end | |||
|description=CAGE_peak_4_at_CHEK2_5end | |||
|id=chr22:29108124..29108188,- | |||
|ontology_enrichment_celltype=CL:0000055!5.00e-15!180;CL:0000680!1.10e-11!57;CL:0000056!1.10e-11!57;CL:0000355!1.10e-11!57;CL:0000057!1.15e-11!75;CL:0000187!5.33e-10!54;CL:0000192!5.99e-09!42;CL:0000514!5.99e-09!42;CL:0000183!3.41e-08!59;CL:0000393!7.07e-08!60;CL:0000211!7.07e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.11e-09;9!CL:0000447;3.11e-09;9!CL:0000499;7.10e-08;28!CL:0002504;7.81e-08;3!CL:1000279;7.81e-08;3!CL:1000280;7.81e-08;3!CL:0000515;6.88e-07;3!CL:0000327;9.69e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.06e-09,9;CL:0000447,3.06e-09,9;CL:0000680,4.78e-09,58;CL:0000056,4.78e-09,58;CL:0000355,4.78e-09,58;CL:0000192,1.95e-08,43;CL:0000514,1.95e-08,43;CL:0000499,7.85e-08,28;CL:0002504,8.67e-08,3;CL:1000279,8.67e-08,3;CL:1000280,8.67e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!2.59e-11!63;UBERON:0001015!2.59e-11!63;UBERON:0000383!2.59e-11!63;UBERON:0001134!1.05e-10!61;UBERON:0002036!1.05e-10!61;UBERON:0003082!1.05e-10!61;UBERON:0004290!3.87e-10!70;UBERON:0000914!4.37e-10!83;UBERON:0002329!4.37e-10!83;UBERON:0003077!4.37e-10!83;UBERON:0003059!4.37e-10!83;UBERON:0007282!4.37e-10!83;UBERON:0009618!4.37e-10!83;UBERON:0007285!4.37e-10!83;UBERON:0003104!1.45e-08!238;UBERON:0009142!1.45e-08!238;UBERON:0000486!3.00e-08!82;UBERON:0005256!5.16e-08!143;UBERON:0000490!1.20e-07!138;UBERON:0000481!1.75e-07!347;UBERON:0002100!5.96e-07!216;UBERON:0001737!7.90e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.22e-11;9!UBERON:0000042;4.22e-11;9!UBERON:0003688;2.12e-08;6!UBERON:0002358;2.12e-08;6!UBERON:0003684;2.12e-08;6!UBERON:0001178;2.12e-08;6!UBERON:0002367;7.65e-07;11!UBERON:0010147;7.65e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.56e-08,6;UBERON:0002358,2.56e-08,6;UBERON:0003684,2.56e-08,6;UBERON:0001178,2.56e-08,6;UBERON:0001134,3.75e-08,62;UBERON:0002036,3.75e-08,62;UBERON:0003082,3.75e-08,62;UBERON:0004457,5.74e-08,12;UBERON:0000042,5.74e-08,12;UBERON:0002385,9.48e-08,64;UBERON:0001015,9.48e-08,64;UBERON:0000383,9.48e-08,64;UBERON:0002367,8.30e-07,11;UBERON:0010147,8.30e-07,11;UBERON:0009846,8.30e-07,11;UBERON:0003353,8.30e-07,11;UBERON:0004902,8.30e-07,11;UBERON:0003820,8.30e-07,11;UBERON:0009847,8.30e-07,11 | |||
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| |||
|short_description=p4@CHEK2 | |||
}} |
Revision as of 11:21, 12 September 2013
Short description: | p4@CHEK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_CHEK2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000464581_5end |
EntrezGene: | CHEK2 |
HGNC: | 16627 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.06e-09 | 9 |
carbohydrate secreting cell | 3.06e-09 | 9 |
muscle precursor cell | 4.78e-09 | 58 |
myoblast | 4.78e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.78e-09 | 58 |
smooth muscle cell | 1.95e-08 | 43 |
smooth muscle myoblast | 1.95e-08 | 43 |
stromal cell | 7.85e-08 | 28 |
enteric smooth muscle cell | 8.67e-08 | 3 |
smooth muscle cell of large intestine | 8.67e-08 | 3 |
smooth muscle cell of colon | 8.67e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.56e-08 | 6 |
peritoneum | 2.56e-08 | 6 |
abdominal cavity | 2.56e-08 | 6 |
visceral peritoneum | 2.56e-08 | 6 |
skeletal muscle tissue | 3.75e-08 | 62 |
striated muscle tissue | 3.75e-08 | 62 |
myotome | 3.75e-08 | 62 |
cavity lining | 5.74e-08 | 12 |
serous membrane | 5.74e-08 | 12 |
muscle tissue | 9.48e-08 | 64 |
musculature | 9.48e-08 | 64 |
musculature of body | 9.48e-08 | 64 |
prostate gland | 8.30e-07 | 11 |
male accessory sex gland | 8.30e-07 | 11 |
embryonic cloacal epithelium | 8.30e-07 | 11 |
epithelium of hindgut | 8.30e-07 | 11 |
urogenital sinus epithelium | 8.30e-07 | 11 |
prostate bud | 8.30e-07 | 11 |
prostate field | 8.30e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.