FFCP PHASE1:Hg19::chr2:121493492..121493537,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2736|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4318|TSSclassifier=W|UniProt=Q1PSW9|association_with_transcript=-285bp_to_ENST00000418323,uc002tmp.1_5end|description=CAGE_peak_2_at_GLI2_5end|id=chr2:121493492..121493537,+|ontology_enrichment_celltype=CL:0000055!2.99e-31!180;CL:0000057!2.44e-14!75;CL:0000183!4.87e-14!59;CL:0000393!1.71e-13!60;CL:0000211!1.71e-13!60;CL:0000680!1.17e-12!57;CL:0000056!1.17e-12!57;CL:0000355!1.17e-12!57;CL:0000187!2.34e-12!54;CL:0000192!2.75e-10!42;CL:0000514!2.75e-10!42;CL:0000359!1.09e-07!32|ontology_enrichment_celltype_v019=CL:0000192;3.92e-08;43!CL:0000393;8.96e-08;61!CL:0000211;8.96e-08;61!CL:0000187;9.55e-08;55!CL:0000359;2.51e-07;32|ontology_enrichment_celltype_v019_2=CL:0000393,1.62e-14,61;CL:0000211,1.62e-14,61;CL:0000057,7.04e-14,76;CL:0000187,3.53e-13,55;CL:0000680,4.26e-13,58;CL:0000056,4.26e-13,58;CL:0000355,4.26e-13,58;CL:0000192,1.54e-10,43;CL:0000514,1.54e-10,43;CL:0000359,1.28e-07,32;CL:0000222,6.80e-07,121|ontology_enrichment_development_v019=CL:0000514;3.92e-08;43!CL:0000355;3.03e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!1.95e-16!365;UBERON:0000481!7.85e-14!347;UBERON:0005256!1.43e-11!143;UBERON:0004290!1.91e-11!70;UBERON:0001134!2.21e-11!61;UBERON:0002036!2.21e-11!61;UBERON:0003082!2.21e-11!61;UBERON:0002385!2.96e-11!63;UBERON:0001015!2.96e-11!63;UBERON:0000383!2.96e-11!63;UBERON:0000914!8.40e-11!83;UBERON:0002329!8.40e-11!83;UBERON:0003077!8.40e-11!83;UBERON:0003059!8.40e-11!83;UBERON:0007282!8.40e-11!83;UBERON:0009618!8.40e-11!83;UBERON:0007285!8.40e-11!83;UBERON:0002100!2.23e-10!216;UBERON:0003104!9.86e-10!238;UBERON:0009142!9.86e-10!238;UBERON:0000468!1.97e-09!659;UBERON:0000486!2.97e-08!82;UBERON:0000119!2.52e-07!312;UBERON:0000483!6.39e-07!309|ontology_enrichment_uberon_v019=UBERON:0000991;7.97e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.10e-12,160;UBERON:0009142,1.10e-12,160;UBERON:0007503,5.02e-12,78;UBERON:0001134,5.93e-12,62;UBERON:0002036,5.93e-12,62;UBERON:0003082,5.93e-12,62;UBERON:0005256,6.58e-12,122;UBERON:0002385,1.44e-11,64;UBERON:0001015,1.44e-11,64;UBERON:0000383,1.44e-11,64;UBERON:0007524,2.38e-11,73;UBERON:0002329,2.49e-11,71;UBERON:0003059,2.49e-11,71;UBERON:0007282,2.49e-11,71;UBERON:0004290,2.49e-11,71;UBERON:0009618,2.49e-11,71;UBERON:0003077,6.36e-11,72;UBERON:0007285,6.36e-11,72;UBERON:0002100,4.49e-09,199;UBERON:0000486,2.57e-08,83;UBERON:0003886,5.54e-07,54;UBERON:0000991,7.44e-07,21;UBERON:0009196,7.44e-07,21;UBERON:0009117,7.44e-07,21;UBERON:0005564,7.44e-07,21;UBERON:0004176,8.02e-07,22;UBERON:0000490,9.33e-07,148|phase1_expression=5.81370813665781,2.99740733447376,8.17535543756633,5.00366491765652,4.46961094427288,1.74467704820074,2.53299878168311,0.631719873426831,0,5.6518805395347,1.39560233594486,0,0.527533956456907,0.618831764800233,0.331397375727916,4.03395087871065,4.21886169616784,0.730310090387373,2.43966399395253,2.58554221961255,1.42800483870977,5.32873026512749,8.01460763966959,4.79060487755095,7.40701573609337,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,2.68511379871414,2.1686349143074,2.50668955317945,0.869079113764942,2.3858578411533,4.86634870302636,2.45790524626576,1.99556457716308,2.72287835648691,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,4.47274756525787,3.41902381494365,2.78059279707759,5.73673241497627,2.83734705758686,1.68203280042692,4.2699598291882,5.67335361359468,2.8008993185979,0.942974704487816,1.63461903113459,6.50836938873205,19.58998143232,2.81185718200556,0.624320153660641,0.570471821544449,0.747243402759005,1.76151747965647,1.29498355494505,1.68540968042698,0.204154171254893,2.33385202892359,0.516628905878827,0,0.989067717114227,4.55080680969013,7.18618141816238,1.0100166837244,2.87772595705518,0.554128230968366,6.14568669233173,2.75839016219118,1.50238058906597,1.70148274740032,9.50765069150968,3.41691822109708,2.11931901159562,8.10245959427886,2.16410311400722,7.72921620136887,2.79175284497385,5.73839529620305,2.04617710838517,8.07788077581166,2.57739716198438,2.58633690910099,7.4552014428489,3.32481924151213,3.89989362314122,0,0,0,6.46460642486856,8.21684563593209,4.88014560051977,7.98190123618352,8.57890892977137,8.02950189966826,0,3.21620469096443,5.52539685409922,1.39310378409594,2.88751792667834,1.41968160047813,1.18009283054671,2.6511213287183,1.54411561825352,1.52515610864684,1.18635309555548,0.674156540800822,1.37355025587742,0.38474715694639,0,5.60967095213783,6.5851841813024,7.3504355692771,0,0,0.590789906681404,0,0.245976877086227,2.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2736 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4318 | |||
|TSSclassifier=W | |||
|UniProt=Q1PSW9 | |||
|association_with_transcript=-285bp_to_ENST00000418323,uc002tmp.1_5end | |||
|description=CAGE_peak_2_at_GLI2_5end | |||
|id=chr2:121493492..121493537,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.99e-31!180;CL:0000057!2.44e-14!75;CL:0000183!4.87e-14!59;CL:0000393!1.71e-13!60;CL:0000211!1.71e-13!60;CL:0000680!1.17e-12!57;CL:0000056!1.17e-12!57;CL:0000355!1.17e-12!57;CL:0000187!2.34e-12!54;CL:0000192!2.75e-10!42;CL:0000514!2.75e-10!42;CL:0000359!1.09e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000192;3.92e-08;43!CL:0000393;8.96e-08;61!CL:0000211;8.96e-08;61!CL:0000187;9.55e-08;55!CL:0000359;2.51e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.62e-14,61;CL:0000211,1.62e-14,61;CL:0000057,7.04e-14,76;CL:0000187,3.53e-13,55;CL:0000680,4.26e-13,58;CL:0000056,4.26e-13,58;CL:0000355,4.26e-13,58;CL:0000192,1.54e-10,43;CL:0000514,1.54e-10,43;CL:0000359,1.28e-07,32;CL:0000222,6.80e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.92e-08;43!CL:0000355;3.03e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.95e-16!365;UBERON:0000481!7.85e-14!347;UBERON:0005256!1.43e-11!143;UBERON:0004290!1.91e-11!70;UBERON:0001134!2.21e-11!61;UBERON:0002036!2.21e-11!61;UBERON:0003082!2.21e-11!61;UBERON:0002385!2.96e-11!63;UBERON:0001015!2.96e-11!63;UBERON:0000383!2.96e-11!63;UBERON:0000914!8.40e-11!83;UBERON:0002329!8.40e-11!83;UBERON:0003077!8.40e-11!83;UBERON:0003059!8.40e-11!83;UBERON:0007282!8.40e-11!83;UBERON:0009618!8.40e-11!83;UBERON:0007285!8.40e-11!83;UBERON:0002100!2.23e-10!216;UBERON:0003104!9.86e-10!238;UBERON:0009142!9.86e-10!238;UBERON:0000468!1.97e-09!659;UBERON:0000486!2.97e-08!82;UBERON:0000119!2.52e-07!312;UBERON:0000483!6.39e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000991;7.97e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.10e-12,160;UBERON:0009142,1.10e-12,160;UBERON:0007503,5.02e-12,78;UBERON:0001134,5.93e-12,62;UBERON:0002036,5.93e-12,62;UBERON:0003082,5.93e-12,62;UBERON:0005256,6.58e-12,122;UBERON:0002385,1.44e-11,64;UBERON:0001015,1.44e-11,64;UBERON:0000383,1.44e-11,64;UBERON:0007524,2.38e-11,73;UBERON:0002329,2.49e-11,71;UBERON:0003059,2.49e-11,71;UBERON:0007282,2.49e-11,71;UBERON:0004290,2.49e-11,71;UBERON:0009618,2.49e-11,71;UBERON:0003077,6.36e-11,72;UBERON:0007285,6.36e-11,72;UBERON:0002100,4.49e-09,199;UBERON:0000486,2.57e-08,83;UBERON:0003886,5.54e-07,54;UBERON:0000991,7.44e-07,21;UBERON:0009196,7.44e-07,21;UBERON:0009117,7.44e-07,21;UBERON:0005564,7.44e-07,21;UBERON:0004176,8.02e-07,22;UBERON:0000490,9.33e-07,148 | |||
|phase1_expression=5.81370813665781,2.99740733447376,8.17535543756633,5.00366491765652,4.46961094427288,1.74467704820074,2.53299878168311,0.631719873426831,0,5.6518805395347,1.39560233594486,0,0.527533956456907,0.618831764800233,0.331397375727916,4.03395087871065,4.21886169616784,0.730310090387373,2.43966399395253,2.58554221961255,1.42800483870977,5.32873026512749,8.01460763966959,4.79060487755095,7.40701573609337,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,2.68511379871414,2.1686349143074,2.50668955317945,0.869079113764942,2.3858578411533,4.86634870302636,2.45790524626576,1.99556457716308,2.72287835648691,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0.183201743930407,0,0,0,4.47274756525787,3.41902381494365,2.78059279707759,5.73673241497627,2.83734705758686,1.68203280042692,4.2699598291882,5.67335361359468,2.8008993185979,0.942974704487816,1.63461903113459,6.50836938873205,19.58998143232,2.81185718200556,0.624320153660641,0.570471821544449,0.747243402759005,1.76151747965647,1.29498355494505,1.68540968042698,0.204154171254893,2.33385202892359,0.516628905878827,0,0.989067717114227,4.55080680969013,7.18618141816238,1.0100166837244,2.87772595705518,0.554128230968366,6.14568669233173,2.75839016219118,1.50238058906597,1.70148274740032,9.50765069150968,3.41691822109708,2.11931901159562,8.10245959427886,2.16410311400722,7.72921620136887,2.79175284497385,5.73839529620305,2.04617710838517,8.07788077581166,2.57739716198438,2.58633690910099,7.4552014428489,3.32481924151213,3.89989362314122,0,0,0,6.46460642486856,8.21684563593209,4.88014560051977,7.98190123618352,8.57890892977137,8.02950189966826,0,3.21620469096443,5.52539685409922,1.39310378409594,2.88751792667834,1.41968160047813,1.18009283054671,2.6511213287183,1.54411561825352,1.52515610864684,1.18635309555548,0.674156540800822,1.37355025587742,0.38474715694639,0,5.60967095213783,6.5851841813024,7.3504355692771,0,0,0.590789906681404,0,0.245976877086227,2.05881372358231,0.109750285408626,0,0,0.0925884451585296,1.62904152655162,0,1.44331342025273,2.89826012437692,2.23076519048061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.31724984865235,0.864719720501769,0.25248486685276,0,0,0,0,0.308482478109971,0,0,2.69114602428866,1.74384027533312,2.71351657537515,3.49033632546,7.15312891703765,3.381211010224,3.19125739901845,7.28052058379563,2.57207374262142,2.83698264046557,1.8649552531127,8.00676764485626,3.7983512377401,4.93944202068461,0.65147236858747,6.39705507736582,3.16780749173372,0.904318131178758,0.871533458600294,2.29937879718731,0,0,0,2.15662369942424,2.29723871668228,2.85273810081437,1.88215698667853,2.67119219315498,0.895304816199478,0,0,0,0,6.35236560556159,3.90419561572865,1.54657762555539,2.34522771468088,1.27587750330633,0,0,0,1.34960640891054,1.00034104211935,0.271265023699736,0.831883446123229,1.60586089917446,0.630809660135739,1.40569697991256,0.902838299183157,0,1.03473071292505,1.99267679560631,4.24049087645917,1.30325421702124,9.39845555821155,3.77457766191941,0,0,0,0,0,0.30239029332968,6.69891081110698,16.1135071952466,6.45518217196069,5.50998341799514,2.55853624533352,9.32952742632923,1.48418066444991,5.5515489768956,5.50441348470694,1.56041596426237,0.519254429183621,3.48631135379878,0.120859449591622,0,0,5.51109351190112,3.45973219212762,6.16284750309293,0.451199612907412,1.38627606787947,2.35304930753057,1.46139224653261,1.68882606228601,0,0.340187410553031,3.02282282542995,1.54227252690289,5.68987518842091,11.0371750248068,0,0,1.11937377361089,0,0,1.28225062558195,2.29610251989794,0.976135183992909,0.309123034943167,17.4897677803036,14.7692004857852,1.72279661398852,0,6.42735719376638,1.93341436584244,3.69716681075147,3.07007349452259,1.51620229732984,2.79292636657511,3.91545073568417,4.09087811597284,1.95870478422822,0,0.192190067365106,0.127612712494584,0,4.18360994367557,6.2962469366128,9.0614845120878,1.54016790088044,4.7907542728532,6.95946393660058,2.96518750566272,0.143124886741991,0.372158369359667,0.632758849437452,1.71567174531442,1.27948895655667,2.56763392820352,6.36406495851874,2.35484592059769,3.23770423649967,4.94166653524899,5.1837457032102,2.22400729730648,1.58510321173008,1.68503382495592,6.82687234725426,1.70599442741899,1.05650146756755,2.72999822815972,11.0296236923896,5.65040583101214,15.9895949628376,2.65375590096488,1.31535265576129,0.578775534266688,3.27947376023316,2.43492452355245,4.02770547529675,4.22543403798362,2.58140433967293,1.47373561519682,1.07001315444375,1.41904425628239,0.211107635297664,0.329294892959902,3.03578539012572,3.49934720244983,0,0.670302275535787,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88743956579008,1.22520107990516,0,0,0,0.159426272728822,3.5924286857907,1.5320429610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| |||
|short_description=p2@GLI2 | |||
}} |
Revision as of 13:18, 12 September 2013
Short description: | p2@GLI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GLI2_5end |
Coexpression cluster: | NA |
Association with transcript: | -285bp_to_ENST00000418323, uc002tmp.1_5end |
EntrezGene: | GLI2 |
HGNC: | 4318 |
UniProt: | Q1PSW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.62e-14 | 61 |
electrically active cell | 1.62e-14 | 61 |
fibroblast | 7.04e-14 | 76 |
muscle cell | 3.53e-13 | 55 |
muscle precursor cell | 4.26e-13 | 58 |
myoblast | 4.26e-13 | 58 |
multi-potent skeletal muscle stem cell | 4.26e-13 | 58 |
smooth muscle cell | 1.54e-10 | 43 |
smooth muscle myoblast | 1.54e-10 | 43 |
vascular associated smooth muscle cell | 1.28e-07 | 32 |
mesodermal cell | 6.80e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.10e-12 | 160 |
entire embryonic mesenchyme | 1.10e-12 | 160 |
epithelial vesicle | 5.02e-12 | 78 |
skeletal muscle tissue | 5.93e-12 | 62 |
striated muscle tissue | 5.93e-12 | 62 |
myotome | 5.93e-12 | 62 |
trunk mesenchyme | 6.58e-12 | 122 |
muscle tissue | 1.44e-11 | 64 |
musculature | 1.44e-11 | 64 |
musculature of body | 1.44e-11 | 64 |
dense mesenchyme tissue | 2.38e-11 | 73 |
somite | 2.49e-11 | 71 |
presomitic mesoderm | 2.49e-11 | 71 |
presumptive segmental plate | 2.49e-11 | 71 |
dermomyotome | 2.49e-11 | 71 |
trunk paraxial mesoderm | 2.49e-11 | 71 |
paraxial mesoderm | 6.36e-11 | 72 |
presumptive paraxial mesoderm | 6.36e-11 | 72 |
trunk | 4.49e-09 | 199 |
multilaminar epithelium | 2.57e-08 | 83 |
body cavity precursor | 5.54e-07 | 54 |
gonad | 7.44e-07 | 21 |
indifferent external genitalia | 7.44e-07 | 21 |
indifferent gonad | 7.44e-07 | 21 |
gonad primordium | 7.44e-07 | 21 |
external genitalia | 8.02e-07 | 22 |
unilaminar epithelium | 9.33e-07 | 148 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.