FFCP PHASE1:Hg19::chr2:155565815..155565832,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3760|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6264|TSSclassifier=S|UniProt=|association_with_transcript=-11bp_to_ENST00000493505_5end|coexpression_cluster_id=C11|description=CAGE_peak_4_at_KCNJ3_5end|id=chr2:155565815..155565832,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:154;1.91e-15;2!DOID:4236;1.91e-15;2|ontology_enrichment_disease_v019_2=DOID:154,2.05e-15,2;DOID:4236,2.05e-15,2|ontology_enrichment_uberon=UBERON:0001049!5.13e-55!57;UBERON:0005068!5.13e-55!57;UBERON:0006241!5.13e-55!57;UBERON:0007135!5.13e-55!57;UBERON:0000955!2.80e-47!69;UBERON:0006238!2.80e-47!69;UBERON:0005743!4.08e-46!86;UBERON:0001017!2.12e-45!82;UBERON:0002616!6.59e-45!59;UBERON:0007023!1.95e-41!115;UBERON:0000073!3.27e-41!94;UBERON:0001016!3.27e-41!94;UBERON:0003075!2.08e-37!86;UBERON:0007284!2.08e-37!86;UBERON:0002346!1.74e-35!90;UBERON:0002780!9.07e-33!41;UBERON:0001890!9.07e-33!41;UBERON:0006240!9.07e-33!41;UBERON:0002619!4.66e-32!22;UBERON:0003080!6.55e-32!42;UBERON:0001893!3.49e-31!34;UBERON:0001950!7.40e-30!20;UBERON:0001869!5.51e-29!32;UBERON:0002791!4.09e-28!33;UBERON:0000956!4.86e-28!25;UBERON:0000203!4.86e-28!25;UBERON:0002020!3.95e-27!34;UBERON:0003528!3.95e-27!34;UBERON:0000033!4.29e-26!123;UBERON:0003076!1.49e-25!15;UBERON:0003057!1.49e-25!15;UBERON:0000153!1.33e-24!129;UBERON:0007811!1.33e-24!129;UBERON:0003056!2.32e-23!61;UBERON:0001871!1.25e-20!7;UBERON:0004121!2.72e-20!169;UBERON:0004733!8.17e-20!12;UBERON:0002028!8.17e-20!12;UBERON:0007277!8.17e-20!12;UBERON:0000924!1.12e-19!173;UBERON:0006601!1.12e-19!173;UBERON:0000200!3.45e-19!6;UBERON:0004732!3.24e-18!13;UBERON:0000349!4.28e-16!5;UBERON:0002771!2.26e-14!3;UBERON:0002680!5.56e-14!9;UBERON:0001895!5.56e-14!9;UBERON:0010092!5.56e-14!9;UBERON:0000025!3.15e-13!194;UBERON:0001876!4.96e-11!2;UBERON:0004111!1.93e-10!241;UBERON:0002298!4.69e-10!8;UBERON:0000475!8.46e-09!365;UBERON:0002037!1.99e-08!6;UBERON:0006215!1.99e-08!6;UBERON:0000477!8.00e-08!286;UBERON:0001896!1.26e-07!3;UBERON:0005290!1.26e-07!3;UBERON:0010096!1.26e-07!3;UBERON:0000483!1.86e-07!309;UBERON:0002240!1.93e-07!3;UBERON:0000988!2.06e-07!3;UBERON:0000119!2.52e-07!312|ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0004733;3.22e-38;12!UBERON:0002028;3.22e-38;12!UBERON:0004732;2.45e-35;13!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0001896;9.43e-11;3!UBERON:0005290;9.43e-11;3!UBERON:0000955;1.31e-08;68!UBERON:0001017;5.59e-07;75!UBERON:0000073;6.76e-07;53!UBERON:0002616;6.76e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.16e-43,6;UBERON:0006215,3.16e-43,6;UBERON:0004733,3.07e-38,12;UBERON:0002028,3.07e-38,12;UBERON:0007277,3.07e-38,12;UBERON:0004732,2.34e-35,13;UBERON:0003076,9.68e-31,15;UBERON:0003057,9.68e-31,15;UBERON:0002680,3.84e-29,9;UBERON:0001895,3.84e-29,9;UBERON:0010092,3.84e-29,9;UBERON:0001896,8.99e-11,3;UBERON:0005290,8.99e-11,3;UBERON:0010096,8.99e-11,3;UBERON:0000955,1.74e-10,68;UBERON:0006238,1.74e-10,68;UBERON:0000073,6.15e-09,53;UBERON:0002616,6.15e-09,53;UBERON:0001017,6.90e-09,81;UBERON:0001049,1.72e-08,56;UBERON:0005068,1.72e-08,56;UBERON:0006241,1.72e-08,56;UBERON:0007135,1.72e-08,56;UBERON:0001016,4.82e-08,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.0927680981618513,0,0,0,0,0,0,0,0,1.16641845353302,2.08349993919951,0,0,27.464712537075,30.4092964810868,5.91095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606610196826093,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.0984274815147488,0,0,0.817220436669454,0,0,0,0,0,0.242998226632099,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3760 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6264 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-11bp_to_ENST00000493505_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_KCNJ3_5end | |||
|id=chr2:155565815..155565832,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:154;1.91e-15;2!DOID:4236;1.91e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,2.05e-15,2;DOID:4236,2.05e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.13e-55!57;UBERON:0005068!5.13e-55!57;UBERON:0006241!5.13e-55!57;UBERON:0007135!5.13e-55!57;UBERON:0000955!2.80e-47!69;UBERON:0006238!2.80e-47!69;UBERON:0005743!4.08e-46!86;UBERON:0001017!2.12e-45!82;UBERON:0002616!6.59e-45!59;UBERON:0007023!1.95e-41!115;UBERON:0000073!3.27e-41!94;UBERON:0001016!3.27e-41!94;UBERON:0003075!2.08e-37!86;UBERON:0007284!2.08e-37!86;UBERON:0002346!1.74e-35!90;UBERON:0002780!9.07e-33!41;UBERON:0001890!9.07e-33!41;UBERON:0006240!9.07e-33!41;UBERON:0002619!4.66e-32!22;UBERON:0003080!6.55e-32!42;UBERON:0001893!3.49e-31!34;UBERON:0001950!7.40e-30!20;UBERON:0001869!5.51e-29!32;UBERON:0002791!4.09e-28!33;UBERON:0000956!4.86e-28!25;UBERON:0000203!4.86e-28!25;UBERON:0002020!3.95e-27!34;UBERON:0003528!3.95e-27!34;UBERON:0000033!4.29e-26!123;UBERON:0003076!1.49e-25!15;UBERON:0003057!1.49e-25!15;UBERON:0000153!1.33e-24!129;UBERON:0007811!1.33e-24!129;UBERON:0003056!2.32e-23!61;UBERON:0001871!1.25e-20!7;UBERON:0004121!2.72e-20!169;UBERON:0004733!8.17e-20!12;UBERON:0002028!8.17e-20!12;UBERON:0007277!8.17e-20!12;UBERON:0000924!1.12e-19!173;UBERON:0006601!1.12e-19!173;UBERON:0000200!3.45e-19!6;UBERON:0004732!3.24e-18!13;UBERON:0000349!4.28e-16!5;UBERON:0002771!2.26e-14!3;UBERON:0002680!5.56e-14!9;UBERON:0001895!5.56e-14!9;UBERON:0010092!5.56e-14!9;UBERON:0000025!3.15e-13!194;UBERON:0001876!4.96e-11!2;UBERON:0004111!1.93e-10!241;UBERON:0002298!4.69e-10!8;UBERON:0000475!8.46e-09!365;UBERON:0002037!1.99e-08!6;UBERON:0006215!1.99e-08!6;UBERON:0000477!8.00e-08!286;UBERON:0001896!1.26e-07!3;UBERON:0005290!1.26e-07!3;UBERON:0010096!1.26e-07!3;UBERON:0000483!1.86e-07!309;UBERON:0002240!1.93e-07!3;UBERON:0000988!2.06e-07!3;UBERON:0000119!2.52e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0004733;3.22e-38;12!UBERON:0002028;3.22e-38;12!UBERON:0004732;2.45e-35;13!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0001896;9.43e-11;3!UBERON:0005290;9.43e-11;3!UBERON:0000955;1.31e-08;68!UBERON:0001017;5.59e-07;75!UBERON:0000073;6.76e-07;53!UBERON:0002616;6.76e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.16e-43,6;UBERON:0006215,3.16e-43,6;UBERON:0004733,3.07e-38,12;UBERON:0002028,3.07e-38,12;UBERON:0007277,3.07e-38,12;UBERON:0004732,2.34e-35,13;UBERON:0003076,9.68e-31,15;UBERON:0003057,9.68e-31,15;UBERON:0002680,3.84e-29,9;UBERON:0001895,3.84e-29,9;UBERON:0010092,3.84e-29,9;UBERON:0001896,8.99e-11,3;UBERON:0005290,8.99e-11,3;UBERON:0010096,8.99e-11,3;UBERON:0000955,1.74e-10,68;UBERON:0006238,1.74e-10,68;UBERON:0000073,6.15e-09,53;UBERON:0002616,6.15e-09,53;UBERON:0001017,6.90e-09,81;UBERON:0001049,1.72e-08,56;UBERON:0005068,1.72e-08,56;UBERON:0006241,1.72e-08,56;UBERON:0007135,1.72e-08,56;UBERON:0001016,4.82e-08,89 | |||
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|short_description=p4@KCNJ3 | |||
}} |
Revision as of 14:09, 12 September 2013
Short description: | p4@KCNJ3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_KCNJ3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -11bp_to_ENST00000493505_5end |
EntrezGene: | KCNJ3 |
HGNC: | 6264 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.16e-43 | 6 |
rhombic lip | 3.16e-43 | 6 |
segmental subdivision of hindbrain | 3.07e-38 | 12 |
hindbrain | 3.07e-38 | 12 |
presumptive hindbrain | 3.07e-38 | 12 |
segmental subdivision of nervous system | 2.34e-35 | 13 |
posterior neural tube | 9.68e-31 | 15 |
chordal neural plate | 9.68e-31 | 15 |
regional part of metencephalon | 3.84e-29 | 9 |
metencephalon | 3.84e-29 | 9 |
future metencephalon | 3.84e-29 | 9 |
medulla oblongata | 8.99e-11 | 3 |
myelencephalon | 8.99e-11 | 3 |
future myelencephalon | 8.99e-11 | 3 |
brain | 1.74e-10 | 68 |
future brain | 1.74e-10 | 68 |
regional part of nervous system | 6.15e-09 | 53 |
regional part of brain | 6.15e-09 | 53 |
central nervous system | 6.90e-09 | 81 |
neural tube | 1.72e-08 | 56 |
neural rod | 1.72e-08 | 56 |
future spinal cord | 1.72e-08 | 56 |
neural keel | 1.72e-08 | 56 |
nervous system | 4.82e-08 | 89 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 2.05e-15 | 2 |
carcinosarcoma | 2.05e-15 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.