FFCP PHASE1:Hg19::chr2:204732524..204732537,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1493|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2505|TSSclassifier=S|UniProt=P16410|association_with_transcript=13bp_to_NM_001037631,NM_005214_5end|coexpression_cluster_id=C103|description=CAGE_peak_3_at_CTLA4_5end|id=chr2:204732524..204732537,+|ontology_enrichment_celltype=CL:0000791!2.52e-32!18;CL:0000789!2.52e-32!18;CL:0002420!2.52e-32!18;CL:0002419!2.52e-32!18;CL:0000790!2.52e-32!18;CL:0000084!1.52e-27!25;CL:0000827!1.52e-27!25;CL:0000625!6.00e-22!11;CL:0000738!2.59e-17!140;CL:0002087!1.02e-16!119;CL:0000838!6.19e-16!52;CL:0000542!1.65e-15!53;CL:0000051!1.65e-15!53;CL:0000624!3.13e-14!6;CL:0000988!8.40e-13!182;CL:0002031!1.70e-12!124;CL:0000080!6.42e-12!6;CL:0000037!6.81e-12!172;CL:0000566!6.81e-12!172;CL:0002032!2.18e-10!165;CL:0000837!2.18e-10!165;CL:0000898!4.70e-08!3;CL:0000842!2.18e-07!3;CL:0000990!3.57e-07!8;CL:0000623!7.91e-07!3;CL:0000825!7.91e-07!3|ontology_enrichment_celltype_v019=CL:0000791;5.38e-40;18!CL:0000789;5.38e-40;18!CL:0002419;5.38e-40;18!CL:0000084;1.89e-32;25!CL:0000624;3.87e-28;6!CL:0000625;9.17e-19;11!CL:0000898;3.56e-15;3!CL:0000226;1.77e-13;3!CL:0000842;1.77e-13;3!CL:0000815;7.89e-11;2!CL:0000792;7.89e-11;2!CL:0002677;7.89e-11;2!CL:0000542;1.58e-09;53!CL:0000623;8.55e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,2.78e-40,18;CL:0000789,2.78e-40,18;CL:0002420,2.78e-40,18;CL:0002419,2.78e-40,18;CL:0000790,2.78e-40,18;CL:0000084,1.43e-32,25;CL:0000827,1.43e-32,25;CL:0000624,4.17e-28,6;CL:0000625,5.00e-19,11;CL:0000838,1.48e-18,52;CL:0000542,3.89e-18,53;CL:0000051,3.89e-18,53;CL:0000898,3.74e-15,3;CL:0000226,9.13e-14,3;CL:0000842,9.13e-14,3;CL:0002087,4.65e-12,115;CL:0000738,8.90e-12,136;CL:0000815,8.28e-11,2;CL:0000792,8.28e-11,2;CL:0002677,8.28e-11,2;CL:0000037,1.39e-08,168;CL:0000988,6.70e-08,177;CL:0002031,6.81e-08,120|ontology_enrichment_development_v019=CL:0000790;5.38e-40;18!CL:0000051;1.58e-09;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!2.86e-20!15;UBERON:0000179!2.86e-20!15;UBERON:0000463!2.86e-20!15;UBERON:0002193!3.25e-11!112;UBERON:0002390!4.80e-11!102;UBERON:0003061!4.80e-11!102;UBERON:0004177!2.05e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;5.05e-07;15!UBERON:0000179;5.05e-07;15!UBERON:0000463;5.05e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-07,15;UBERON:0000179,4.01e-07,15;UBERON:0000463,4.01e-07,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0.223915474239924,1.29557466407592,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,4.72103448273199,5.50215067848831,10.485676448975,16.7186495390678,21.1849473311834,13.7299863663073,21.4309401248702,21.2793972650682,85.7303190751776,68.2324395317553,72.8462393527892,24.849716026781,32.7749555850893,1.15106533222573,0.829050053357545,0.579606171470105,3.55887751588945,1.33770414044857,3.1360657141493,2.49280553934646,7.66440987203842,13.0578429283399,10.8798467568386,3.50421955756506,0.651083453856419,1.90090408889675,2.40920190524436,1.91979916731628,3.74792179657038,1.18388626022008,1.64225599384209,0.604820229674197,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,1.29818957461873,0.522389211897802,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,2.15627574859517,1.15508732651774,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,1.50999940573032,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,2.29391162142713,0,1.42939065274673,0.411362273086194,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.494255755786011,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2505 | |||
|TSSclassifier=S | |||
|UniProt=P16410 | |||
|association_with_transcript=13bp_to_NM_001037631,NM_005214_5end | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_3_at_CTLA4_5end | |||
|id=chr2:204732524..204732537,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.52e-32!18;CL:0000789!2.52e-32!18;CL:0002420!2.52e-32!18;CL:0002419!2.52e-32!18;CL:0000790!2.52e-32!18;CL:0000084!1.52e-27!25;CL:0000827!1.52e-27!25;CL:0000625!6.00e-22!11;CL:0000738!2.59e-17!140;CL:0002087!1.02e-16!119;CL:0000838!6.19e-16!52;CL:0000542!1.65e-15!53;CL:0000051!1.65e-15!53;CL:0000624!3.13e-14!6;CL:0000988!8.40e-13!182;CL:0002031!1.70e-12!124;CL:0000080!6.42e-12!6;CL:0000037!6.81e-12!172;CL:0000566!6.81e-12!172;CL:0002032!2.18e-10!165;CL:0000837!2.18e-10!165;CL:0000898!4.70e-08!3;CL:0000842!2.18e-07!3;CL:0000990!3.57e-07!8;CL:0000623!7.91e-07!3;CL:0000825!7.91e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.38e-40;18!CL:0000789;5.38e-40;18!CL:0002419;5.38e-40;18!CL:0000084;1.89e-32;25!CL:0000624;3.87e-28;6!CL:0000625;9.17e-19;11!CL:0000898;3.56e-15;3!CL:0000226;1.77e-13;3!CL:0000842;1.77e-13;3!CL:0000815;7.89e-11;2!CL:0000792;7.89e-11;2!CL:0002677;7.89e-11;2!CL:0000542;1.58e-09;53!CL:0000623;8.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.78e-40,18;CL:0000789,2.78e-40,18;CL:0002420,2.78e-40,18;CL:0002419,2.78e-40,18;CL:0000790,2.78e-40,18;CL:0000084,1.43e-32,25;CL:0000827,1.43e-32,25;CL:0000624,4.17e-28,6;CL:0000625,5.00e-19,11;CL:0000838,1.48e-18,52;CL:0000542,3.89e-18,53;CL:0000051,3.89e-18,53;CL:0000898,3.74e-15,3;CL:0000226,9.13e-14,3;CL:0000842,9.13e-14,3;CL:0002087,4.65e-12,115;CL:0000738,8.90e-12,136;CL:0000815,8.28e-11,2;CL:0000792,8.28e-11,2;CL:0002677,8.28e-11,2;CL:0000037,1.39e-08,168;CL:0000988,6.70e-08,177;CL:0002031,6.81e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000790;5.38e-40;18!CL:0000051;1.58e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.86e-20!15;UBERON:0000179!2.86e-20!15;UBERON:0000463!2.86e-20!15;UBERON:0002193!3.25e-11!112;UBERON:0002390!4.80e-11!102;UBERON:0003061!4.80e-11!102;UBERON:0004177!2.05e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.05e-07;15!UBERON:0000179;5.05e-07;15!UBERON:0000463;5.05e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.01e-07,15;UBERON:0000179,4.01e-07,15;UBERON:0000463,4.01e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0.223915474239924,1.29557466407592,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,4.72103448273199,5.50215067848831,10.485676448975,16.7186495390678,21.1849473311834,13.7299863663073,21.4309401248702,21.2793972650682,85.7303190751776,68.2324395317553,72.8462393527892,24.849716026781,32.7749555850893,1.15106533222573,0.829050053357545,0.579606171470105,3.55887751588945,1.33770414044857,3.1360657141493,2.49280553934646,7.66440987203842,13.0578429283399,10.8798467568386,3.50421955756506,0.651083453856419,1.90090408889675,2.40920190524436,1.91979916731628,3.74792179657038,1.18388626022008,1.64225599384209,0.604820229674197,0.802320587350522,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,1.29818957461873,0.522389211897802,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,2.15627574859517,1.15508732651774,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,1.50999940573032,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,2.29391162142713,0,1.42939065274673,0.411362273086194,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.494255755786011,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533937062838473,0,0,3.47316215268366,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0,0,0,0,0.999936979274649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0.657887425858975,0.515663103788617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,1.29177819672012,0.682821857254437,0,0.0636471582781649,0,0,0,2.62673006756891,0,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | |||
|short_description=p3@CTLA4 | |||
}} |
Revision as of 16:09, 12 September 2013
Short description: | p3@CTLA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CTLA4_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | 13bp_to_NM_001037631, NM_005214_5end |
EntrezGene: | CTLA4 |
HGNC: | 2505 |
UniProt: | P16410 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.78e-40 | 18 |
alpha-beta T cell | 2.78e-40 | 18 |
immature T cell | 2.78e-40 | 18 |
mature T cell | 2.78e-40 | 18 |
immature alpha-beta T cell | 2.78e-40 | 18 |
T cell | 1.43e-32 | 25 |
pro-T cell | 1.43e-32 | 25 |
CD4-positive, alpha-beta T cell | 4.17e-28 | 6 |
CD8-positive, alpha-beta T cell | 5.00e-19 | 11 |
lymphoid lineage restricted progenitor cell | 1.48e-18 | 52 |
lymphocyte | 3.89e-18 | 53 |
common lymphoid progenitor | 3.89e-18 | 53 |
naive T cell | 3.74e-15 | 3 |
single nucleate cell | 9.13e-14 | 3 |
mononuclear cell | 9.13e-14 | 3 |
nongranular leukocyte | 4.65e-12 | 115 |
leukocyte | 8.90e-12 | 136 |
regulatory T cell | 8.28e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.28e-11 | 2 |
naive regulatory T cell | 8.28e-11 | 2 |
hematopoietic stem cell | 1.39e-08 | 168 |
hematopoietic cell | 6.70e-08 | 177 |
hematopoietic lineage restricted progenitor cell | 6.81e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 4.01e-07 | 15 |
haemolymphatic fluid | 4.01e-07 | 15 |
organism substance | 4.01e-07 | 15 |
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