FFCP PHASE1:Hg19::chr2:219472602..219472628,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84812|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9062|TSSclassifier=S|UniProt=C9JI17,F2Z3H8,C9JRJ2|association_with_transcript=0bp_to_ENST00000251959,ENST00000444453,ENST00000446503,ENST00000457426,ENST00000469493_5end|description=CAGE_peak_1_at_PLCD4_5end|id=chr2:219472602..219472628,+|ontology_enrichment_celltype=CL:0000055!2.30e-08!180|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!2.74e-17!365;UBERON:0000481!4.96e-17!347;UBERON:0000033!2.53e-13!123;UBERON:0000153!2.86e-13!129;UBERON:0007811!2.86e-13!129;UBERON:0004121!4.48e-13!169;UBERON:0000924!3.39e-12!173;UBERON:0006601!3.39e-12!173;UBERON:0007023!6.71e-12!115;UBERON:0000477!5.70e-11!286;UBERON:0000483!3.16e-10!309;UBERON:0000914!3.65e-10!83;UBERON:0002329!3.65e-10!83;UBERON:0003077!3.65e-10!83;UBERON:0003059!3.65e-10!83;UBERON:0007282!3.65e-10!83;UBERON:0009618!3.65e-10!83;UBERON:0007285!3.65e-10!83;UBERON:0000119!5.40e-10!312;UBERON:0000468!1.38e-09!659;UBERON:0003102!3.88e-09!95;UBERON:0000467!4.65e-09!625;UBERON:0000480!6.77e-09!626;UBERON:0000922!9.30e-09!612;UBERON:0002385!1.78e-08!63;UBERON:0001015!1.78e-08!63;UBERON:0000383!1.78e-08!63;UBERON:0002050!2.89e-08!605;UBERON:0005423!2.89e-08!605;UBERON:0000923!3.57e-08!604;UBERON:0005291!3.57e-08!604;UBERON:0006598!3.57e-08!604;UBERON:0002532!3.57e-08!604;UBERON:0004111!3.62e-08!241;UBERON:0001017!7.99e-08!82;UBERON:0001049!8.14e-08!57;UBERON:0005068!8.14e-08!57;UBERON:0006241!8.14e-08!57;UBERON:0007135!8.14e-08!57;UBERON:0003075!8.54e-08!86;UBERON:0007284!8.54e-08!86;UBERON:0001134!8.83e-08!61;UBERON:0002036!8.83e-08!61;UBERON:0003082!8.83e-08!61;UBERON:0002616!1.15e-07!59;UBERON:0000955!1.99e-07!69;UBERON:0006238!1.99e-07!69;UBERON:0000486!2.12e-07!82;UBERON:0005743!2.64e-07!86;UBERON:0000073!3.03e-07!94;UBERON:0001016!3.03e-07!94;UBERON:0004290!4.16e-07!70;UBERON:0002346!6.70e-07!90;UBERON:0000165!8.21e-07!28;UBERON:0000930!8.21e-07!28;UBERON:0003104!8.93e-07!238;UBERON:0009142!8.93e-07!238|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.32e-14,114;UBERON:0004121,3.74e-10,171;UBERON:0000924,3.74e-10,171;UBERON:0006601,3.74e-10,171;UBERON:0010371,1.69e-09,104;UBERON:0011216,2.06e-08,223;UBERON:0001049,1.87e-07,56;UBERON:0005068,1.87e-07,56;UBERON:0006241,1.87e-07,56;UBERON:0007135,1.87e-07,56;UBERON:0003075,2.12e-07,82;UBERON:0007284,2.12e-07,82|phase1_expression=0.181678379270557,2.14100523890983,0.140954404095971,0,0.446961094427288,0,0,0,1.30592814099919,0,0,0,0,5.07442047136191,3.64537113300707,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0.0821005894499457,0,0,0,0,2.75826367343678,2.71085326900425,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.255725123687061,1.44575660953827,0.50133791063589,2.89693037921647,0.795285947051099,3.89307896242109,0.189069634328136,0,0.175669571386252,2.16115474571226,3.27865759463288,0.741568885568859,0,0,0,0,0,0,0.79504962946682,0,0,1.13061588384802,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.732186172644509,0,0.81014194788176,0.267899184852239,0.22452937262617,0.225222960966644,1.53316637465883,0.949265659568129,0,0,0,2.18047026071267,0.496971951695318,0.886413581652058,1.72131935057184,3.72887606973458,1.06400514659507,0,1.06748995729705,0.74000264525148,0.622422070799533,0.538842688278752,0.817309515567294,1.51357427644931,2.30470369792,0.468642863667593,0.312160076830321,0,0.597794722207204,0,0.161872944368132,0.140450806702248,3.47062091133319,1.84251475967652,4.54633437173368,0,0.741800787835671,0.910161361938026,0,0.505008341862199,0.750711119231785,0.277064115484183,2.19488810440419,0.919463387397059,0.150238058906597,0,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,2.57640540045629,0.744467425326359,0.843881661206331,0,0.757301322732344,0.184099797284599,1.2931684545505,0.355009592516614,0.302256294682921,0,0.966304265816484,2.18196896472668,1.14721838155602,0,0.397589304964456,0,0.207322110030741,0.252320850875628,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,1.44375896333917,0.118306800039844,0.337169380156203,0.241011029883482,0.772057809126758,0.871517776369625,0,0.808987848960987,0.392442930250692,0.38474715694639,0,0,1.2347220339942,1.47008711385542,0,0,0,0,0,0.686271241194102,2.96325770603289,2.24803506515239,1.20634766893957,2.40729957412177,0.651616610620649,1.03993478527958,0,0.231860809950154,0,0.721832238805369,0.462985512576611,0.951270761172991,0,0,0,0,0,0.93733833986777,2.6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84812 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9062 | |||
|TSSclassifier=S | |||
|UniProt=C9JI17,F2Z3H8,C9JRJ2 | |||
|association_with_transcript=0bp_to_ENST00000251959,ENST00000444453,ENST00000446503,ENST00000457426,ENST00000469493_5end | |||
|description=CAGE_peak_1_at_PLCD4_5end | |||
|id=chr2:219472602..219472628,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.30e-08!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.74e-17!365;UBERON:0000481!4.96e-17!347;UBERON:0000033!2.53e-13!123;UBERON:0000153!2.86e-13!129;UBERON:0007811!2.86e-13!129;UBERON:0004121!4.48e-13!169;UBERON:0000924!3.39e-12!173;UBERON:0006601!3.39e-12!173;UBERON:0007023!6.71e-12!115;UBERON:0000477!5.70e-11!286;UBERON:0000483!3.16e-10!309;UBERON:0000914!3.65e-10!83;UBERON:0002329!3.65e-10!83;UBERON:0003077!3.65e-10!83;UBERON:0003059!3.65e-10!83;UBERON:0007282!3.65e-10!83;UBERON:0009618!3.65e-10!83;UBERON:0007285!3.65e-10!83;UBERON:0000119!5.40e-10!312;UBERON:0000468!1.38e-09!659;UBERON:0003102!3.88e-09!95;UBERON:0000467!4.65e-09!625;UBERON:0000480!6.77e-09!626;UBERON:0000922!9.30e-09!612;UBERON:0002385!1.78e-08!63;UBERON:0001015!1.78e-08!63;UBERON:0000383!1.78e-08!63;UBERON:0002050!2.89e-08!605;UBERON:0005423!2.89e-08!605;UBERON:0000923!3.57e-08!604;UBERON:0005291!3.57e-08!604;UBERON:0006598!3.57e-08!604;UBERON:0002532!3.57e-08!604;UBERON:0004111!3.62e-08!241;UBERON:0001017!7.99e-08!82;UBERON:0001049!8.14e-08!57;UBERON:0005068!8.14e-08!57;UBERON:0006241!8.14e-08!57;UBERON:0007135!8.14e-08!57;UBERON:0003075!8.54e-08!86;UBERON:0007284!8.54e-08!86;UBERON:0001134!8.83e-08!61;UBERON:0002036!8.83e-08!61;UBERON:0003082!8.83e-08!61;UBERON:0002616!1.15e-07!59;UBERON:0000955!1.99e-07!69;UBERON:0006238!1.99e-07!69;UBERON:0000486!2.12e-07!82;UBERON:0005743!2.64e-07!86;UBERON:0000073!3.03e-07!94;UBERON:0001016!3.03e-07!94;UBERON:0004290!4.16e-07!70;UBERON:0002346!6.70e-07!90;UBERON:0000165!8.21e-07!28;UBERON:0000930!8.21e-07!28;UBERON:0003104!8.93e-07!238;UBERON:0009142!8.93e-07!238 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.32e-14,114;UBERON:0004121,3.74e-10,171;UBERON:0000924,3.74e-10,171;UBERON:0006601,3.74e-10,171;UBERON:0010371,1.69e-09,104;UBERON:0011216,2.06e-08,223;UBERON:0001049,1.87e-07,56;UBERON:0005068,1.87e-07,56;UBERON:0006241,1.87e-07,56;UBERON:0007135,1.87e-07,56;UBERON:0003075,2.12e-07,82;UBERON:0007284,2.12e-07,82 | |||
|phase1_expression=0.181678379270557,2.14100523890983,0.140954404095971,0,0.446961094427288,0,0,0,1.30592814099919,0,0,0,0,5.07442047136191,3.64537113300707,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0.0821005894499457,0,0,0,0,2.75826367343678,2.71085326900425,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.255725123687061,1.44575660953827,0.50133791063589,2.89693037921647,0.795285947051099,3.89307896242109,0.189069634328136,0,0.175669571386252,2.16115474571226,3.27865759463288,0.741568885568859,0,0,0,0,0,0,0.79504962946682,0,0,1.13061588384802,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.732186172644509,0,0.81014194788176,0.267899184852239,0.22452937262617,0.225222960966644,1.53316637465883,0.949265659568129,0,0,0,2.18047026071267,0.496971951695318,0.886413581652058,1.72131935057184,3.72887606973458,1.06400514659507,0,1.06748995729705,0.74000264525148,0.622422070799533,0.538842688278752,0.817309515567294,1.51357427644931,2.30470369792,0.468642863667593,0.312160076830321,0,0.597794722207204,0,0.161872944368132,0.140450806702248,3.47062091133319,1.84251475967652,4.54633437173368,0,0.741800787835671,0.910161361938026,0,0.505008341862199,0.750711119231785,0.277064115484183,2.19488810440419,0.919463387397059,0.150238058906597,0,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,2.57640540045629,0.744467425326359,0.843881661206331,0,0.757301322732344,0.184099797284599,1.2931684545505,0.355009592516614,0.302256294682921,0,0.966304265816484,2.18196896472668,1.14721838155602,0,0.397589304964456,0,0.207322110030741,0.252320850875628,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,1.44375896333917,0.118306800039844,0.337169380156203,0.241011029883482,0.772057809126758,0.871517776369625,0,0.808987848960987,0.392442930250692,0.38474715694639,0,0,1.2347220339942,1.47008711385542,0,0,0,0,0,0.686271241194102,2.96325770603289,2.24803506515239,1.20634766893957,2.40729957412177,0.651616610620649,1.03993478527958,0,0.231860809950154,0,0.721832238805369,0.462985512576611,0.951270761172991,0,0,0,0,0,0.93733833986777,2.68771405118175,2.69372684760534,0.626909658919938,0.290633938513962,0.766765358330422,0,0,0,0,0,2.6669115602711,1.52795370223311,10.5495702489042,1.71072446022705,1.13110241973656,1.20137223137567,2.85826432630578,0.112131084345361,0,0.07333828582095,0.387815147273333,0,0,0,0,1.54324424557285,1.41849132023278,1.0656887160644,0.285955987316295,1.08524321078289,0.823240336780769,0,0.355391948742546,0,0,1.74306691720059,0.099972991182057,0,0,0,0.718874566474748,0,1.42636905040718,0.579125226670317,1.64381058040307,0.179060963239896,0,0,0,0,0.508189248444927,1.30139853857622,0,0,0,0,0,0,2.4538298343828,4.50153468953709,0.813795071099207,0,0.178428988797162,0.157702415033935,0.234282829985426,1.80567659836631,0,0,0,1.84369168541703,2.43274120510632,2.34961388955289,1.02943027143257,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0.321707842287215,0,0.154209693802656,0.710246901252508,0.821271560138091,0,0.232420756919918,0,0.601519410909855,0,0,0.910455840033585,0.655622074797121,0,0,0,0,0,0,0,0,0,1.08378575017541,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,2.29706215198469,1.95018073810956,0,0.96670718292122,0.308097234229289,0.307007349452259,0.275673144969061,2.47066563197029,2.46528379654188,0.255679882248303,1.51354460599453,0,0.384380134730212,2.4246415373971,0,0.464845549297286,1.5740617341532,0,0.308033580176089,0.532306030317022,0,2.03856641014312,1.00187420719394,0.372158369359667,0.632758849437452,0.38126038784765,0,0.855877976067841,2.22742273548156,0,0.719489830333259,1.64722217841633,0.471249609382746,1.61745985258653,0,1.68503382495592,0,1.21856744815642,4.22600587027022,0.136499911407986,1.1312434556297,5.65040583101214,0,2.65375590096488,2.19225442626881,1.15755106853338,3.27947376023316,0.811641507850816,1.54911749049875,1.69017361519345,0.430234056612155,0.196498082026242,0,1.06428319221179,4.43326034125095,1.31717957183961,0.75894634753143,2.44954304171488,1.44333169088268,4.69211592875051,3.26672954583968,0.376575203107117,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.49553699578462,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0.121360521749513,0,0,0.23874448473769,0,0,0.994147647766298,1.26602474769461,0.445234820091624,0,0.844501632511974,1.59398390600856,1.93398740871803,0,0.102268682502155,0,0,0.0898683511473268,0,0,10.1602707806042,0,2.22273980289274,1.93866549219044,0.463840490809256,0,0,1.74919999992391,0,0.227586896570999,0.254253650292766,0.709163045303809,0,0,7.46587478213157,0,0.120596438625408,0,0.552896299656123,1.47773809476774,2.4132393686937,0,0.697118721393016,0.15390051700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| |||
|short_description=p1@PLCD4 | |||
}} |
Revision as of 16:52, 12 September 2013
Short description: | p1@PLCD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PLCD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000251959, ENST00000444453, ENST00000446503, ENST00000457426, ENST00000469493_5end |
EntrezGene: | PLCD4 |
HGNC: | 9062 |
UniProt: | C9JI17F2Z3H8C9JRJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.32e-14 | 114 |
ectoderm-derived structure | 3.74e-10 | 171 |
ectoderm | 3.74e-10 | 171 |
presumptive ectoderm | 3.74e-10 | 171 |
ecto-epithelium | 1.69e-09 | 104 |
organ system subdivision | 2.06e-08 | 223 |
neural tube | 1.87e-07 | 56 |
neural rod | 1.87e-07 | 56 |
future spinal cord | 1.87e-07 | 56 |
neural keel | 1.87e-07 | 56 |
neural plate | 2.12e-07 | 82 |
presumptive neural plate | 2.12e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.