FFCP PHASE1:Mm9::chr10:61337613..61337627,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:61337613..61337627,-|id=chr10:61337613..61337627,-|ontology_enrichment_celltype=CL:0000473!1.54e-15!3;CL:0000627!1.54e-15!3;CL:0000682!1.54e-15!3;CL:0000239!2.01e-13!6;CL:0000677!2.01e-13!6;CL:0000212!2.01e-13!6;CL:0000584!2.01e-13!6;CL:0000075!1.58e-11!7;CL:0002563!5.39e-09!9;CL:0002251!5.39e-09!9;CL:0000066!5.53e-09!25|ontology_enrichment_celltype_v019_2=CL:0000682,5.70e-30,3;CL:0000239,2.66e-26,6;CL:0000677,2.66e-26,6;CL:0000584,2.66e-26,6;CL:0000075,1.27e-22,7;CL:0000066,5.24e-19,25;CL:0002563,1.04e-17,9;CL:0002251,1.04e-17,9;CL:0000473,2.80e-13,7;CL:0002076,8.56e-11,15;CL:0000223,3.51e-08,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.10e-11!15;UBERON:0001962!9.28e-11!2;UBERON:0001961!9.28e-11!2;UBERON:0001744!9.28e-11!2;UBERON:0003350!5.39e-09!9;UBERON:0004808!5.39e-09!9;UBERON:0001277!5.39e-09!9;UBERON:0000970!3.55e-08!9;UBERON:0000019!3.55e-08!9;UBERON:0000047!3.55e-08!9;UBERON:0004088!3.55e-08!9;UBERON:0002104!3.55e-08!9;UBERON:0001456!3.55e-08!9;UBERON:0003072!3.55e-08!9;UBERON:0003071!3.55e-08!9;UBERON:0004128!3.55e-08!9;UBERON:0002465!1.90e-07!3;UBERON:0000485!2.24e-07!11;UBERON:0004923!6.17e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.94e-23,15;UBERON:0001962,3.13e-20,2;UBERON:0001961,3.13e-20,2;UBERON:0001744,3.13e-20,2;UBERON:0003350,1.04e-17,9;UBERON:0004808,1.04e-17,9;UBERON:0001277,1.04e-17,9;UBERON:0000485,1.43e-14,11;UBERON:0004923,1.44e-14,24;UBERON:0002465,7.72e-14,3;UBERON:0001242,2.15e-12,13;UBERON:0001262,2.15e-12,13;UBERON:0004786,2.15e-12,13;UBERON:0003199,7.19e-11,1|phase1_expression=0,10.4692622291808,10.0099832665698,0,0,1.34303417529512,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7997726838022,4.12936705920906,4.59385571292016,5.59990595006797,7.75696437669201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540186389416048,0.150704817835715,0.136072998302656,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr10:61337613..61337627,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:61337613..61337627,- | |||
|id=chr10:61337613..61337627,- | |||
|ontology_enrichment_celltype=CL:0000473!1.54e-15!3;CL:0000627!1.54e-15!3;CL:0000682!1.54e-15!3;CL:0000239!2.01e-13!6;CL:0000677!2.01e-13!6;CL:0000212!2.01e-13!6;CL:0000584!2.01e-13!6;CL:0000075!1.58e-11!7;CL:0002563!5.39e-09!9;CL:0002251!5.39e-09!9;CL:0000066!5.53e-09!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,5.70e-30,3;CL:0000239,2.66e-26,6;CL:0000677,2.66e-26,6;CL:0000584,2.66e-26,6;CL:0000075,1.27e-22,7;CL:0000066,5.24e-19,25;CL:0002563,1.04e-17,9;CL:0002251,1.04e-17,9;CL:0000473,2.80e-13,7;CL:0002076,8.56e-11,15;CL:0000223,3.51e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.10e-11!15;UBERON:0001962!9.28e-11!2;UBERON:0001961!9.28e-11!2;UBERON:0001744!9.28e-11!2;UBERON:0003350!5.39e-09!9;UBERON:0004808!5.39e-09!9;UBERON:0001277!5.39e-09!9;UBERON:0000970!3.55e-08!9;UBERON:0000019!3.55e-08!9;UBERON:0000047!3.55e-08!9;UBERON:0004088!3.55e-08!9;UBERON:0002104!3.55e-08!9;UBERON:0001456!3.55e-08!9;UBERON:0003072!3.55e-08!9;UBERON:0003071!3.55e-08!9;UBERON:0004128!3.55e-08!9;UBERON:0002465!1.90e-07!3;UBERON:0000485!2.24e-07!11;UBERON:0004923!6.17e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.94e-23,15;UBERON:0001962,3.13e-20,2;UBERON:0001961,3.13e-20,2;UBERON:0001744,3.13e-20,2;UBERON:0003350,1.04e-17,9;UBERON:0004808,1.04e-17,9;UBERON:0001277,1.04e-17,9;UBERON:0000485,1.43e-14,11;UBERON:0004923,1.44e-14,24;UBERON:0002465,7.72e-14,3;UBERON:0001242,2.15e-12,13;UBERON:0001262,2.15e-12,13;UBERON:0004786,2.15e-12,13;UBERON:0003199,7.19e-11,1 | |||
|phase1_expression=0,10.4692622291808,10.0099832665698,0,0,1.34303417529512,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7997726838022,4.12936705920906,4.59385571292016,5.59990595006797,7.75696437669201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540186389416048,0.150704817835715,0.136072998302656,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr10:61337613..61337627,- | |||
}} |
Revision as of 17:04, 12 September 2013
Short description: | p@chr10:61337613..61337627, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:61337613..61337627, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 5.70e-30 | 3 |
brush border epithelial cell | 2.66e-26 | 6 |
gut absorptive cell | 2.66e-26 | 6 |
enterocyte | 2.66e-26 | 6 |
columnar/cuboidal epithelial cell | 1.27e-22 | 7 |
epithelial cell | 5.24e-19 | 25 |
intestinal epithelial cell | 1.04e-17 | 9 |
epithelial cell of alimentary canal | 1.04e-17 | 9 |
defensive cell | 2.80e-13 | 7 |
endo-epithelial cell | 8.56e-11 | 15 |
endodermal cell | 3.51e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.94e-23 | 15 |
gut-associated lymphoid tissue | 3.13e-20 | 2 |
mucosa-associated lymphoid tissue | 3.13e-20 | 2 |
lymphoid tissue | 3.13e-20 | 2 |
epithelium of mucosa | 1.04e-17 | 9 |
gastrointestinal system epithelium | 1.04e-17 | 9 |
intestinal epithelium | 1.04e-17 | 9 |
simple columnar epithelium | 1.43e-14 | 11 |
organ component layer | 1.44e-14 | 24 |
lymphoid system | 7.72e-14 | 3 |
intestinal mucosa | 2.15e-12 | 13 |
wall of intestine | 2.15e-12 | 13 |
gastrointestinal system mucosa | 2.15e-12 | 13 |
egg chamber | 7.19e-11 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.