FFCP PHASE1:Mm9::chr11:59953459..59953527,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19377|HGNC=|MCL_coexpression_id=22|UniProt=Q61818,Q5QGZ6,B1AU86|association_with_transcript=-56bp_to_ENSMUST00000171108,NM_001037764,uc007jfl.1,uc007jfm.1_5end|description=CAGE_peak_5_at_Rai1_5end|id=chr11:59953459..59953527,+|ontology_enrichment_celltype=CL:0000540!3.84e-11!33;CL:0000047!3.84e-11!33;CL:0000031!3.84e-11!33;CL:0000404!3.84e-11!33;CL:0000117!5.83e-11!23;CL:0000337!5.83e-11!23;CL:0000221!1.07e-10!44;CL:0000133!1.07e-10!44;CL:0002319!1.18e-10!43;CL:0000393!5.63e-08!39;CL:0000211!5.63e-08!39;CL:0000055!1.91e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.92e-12,23;CL:0000337,8.92e-12,23;CL:0000540,3.73e-11,33;CL:0000047,3.73e-11,33;CL:0000031,3.73e-11,33;CL:0000404,3.73e-11,33;CL:0000221,4.09e-10,44;CL:0000133,4.09e-10,44;CL:0002319,4.67e-10,43;CL:0000393,7.86e-08,39;CL:0000211,7.86e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.65e-25!73;UBERON:0005743!2.65e-25!73;UBERON:0000073!3.82e-24!75;UBERON:0001016!3.82e-24!75;UBERON:0002346!2.49e-23!71;UBERON:0003075!2.49e-23!71;UBERON:0007284!2.49e-23!71;UBERON:0001049!3.81e-21!52;UBERON:0005068!3.81e-21!52;UBERON:0006241!3.81e-21!52;UBERON:0007135!3.81e-21!52;UBERON:0004121!4.03e-21!102;UBERON:0000924!4.03e-21!102;UBERON:0006601!4.03e-21!102;UBERON:0003056!2.55e-19!49;UBERON:0000955!1.09e-18!50;UBERON:0006238!1.09e-18!50;UBERON:0000033!1.33e-18!63;UBERON:0002616!4.15e-18!49;UBERON:0003080!6.55e-18!40;UBERON:0002780!1.65e-17!39;UBERON:0001890!1.65e-17!39;UBERON:0006240!1.65e-17!39;UBERON:0002020!4.17e-15!34;UBERON:0002791!1.37e-12!29;UBERON:0003528!1.37e-12!29;UBERON:0001893!1.37e-12!29;UBERON:0000153!8.17e-10!94;UBERON:0007811!1.06e-09!86;UBERON:0000956!1.16e-09!21;UBERON:0001869!1.16e-09!21;UBERON:0000203!1.16e-09!21;UBERON:0002619!2.03e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.46e-26,73;UBERON:0002346,4.13e-25,64;UBERON:0003075,4.13e-25,64;UBERON:0007284,4.13e-25,64;UBERON:0001016,2.38e-24,75;UBERON:0001049,2.30e-22,52;UBERON:0005068,2.30e-22,52;UBERON:0006241,2.30e-22,52;UBERON:0007135,2.30e-22,52;UBERON:0000073,5.41e-22,54;UBERON:0003056,7.33e-21,49;UBERON:0004121,1.05e-20,95;UBERON:0000924,1.05e-20,95;UBERON:0006601,1.05e-20,95;UBERON:0000955,1.20e-19,47;UBERON:0006238,1.20e-19,47;UBERON:0003080,2.49e-19,40;UBERON:0002616,5.11e-19,46;UBERON:0002780,6.82e-19,39;UBERON:0001890,6.82e-19,39;UBERON:0006240,6.82e-19,39;UBERON:0010371,6.85e-19,73;UBERON:0010314,8.17e-18,92;UBERON:0002020,2.79e-16,34;UBERON:0003528,1.52e-13,29;UBERON:0002791,1.52e-13,29;UBERON:0001893,1.52e-13,29;UBERON:0000956,2.29e-10,21;UBERON:0001869,2.29e-10,21;UBERON:0000203,2.29e-10,21;UBERON:0002619,6.27e-08,17|phase1_expression=0.80074423552397,0,0,0,0,0,0,0.129123323441576,0.563154888606667,0,0,0,0,0.0874204024189974,0,0,0.699561878128147,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,1.65192076945513,4.69434806608824,0.872100625521786,2.41654801007919,1.74986909166855,2.79972843250725,1.43752564364972,0,0,2.35265659399725,0.514518872071894,0,0,11.9366711907163,13.7537654610729,18.3811107016792,2.71075625655306,8.00365316500025,0.449949858640699,0,0.7104801149461,2.39680088414724,6.14749288514487,16.7977171939734,14.9856591548177,15.984697062705,5.71301968807607,6.40518768759679,15.1888591026543,20.6067762689208,28.4957823849107,1.10115880999389,2.80912143787413,3.22573719838111,15.5625819521629,13.0827330351446,10.4182674111352,1.95428099300967,1.12552522006336,3.51435969886663,8.2496003932627,4.27115042397309,8.57437450796383,0.454357159999104,0.302286240427142,0.579728977403356,0,0,0.539703191637817,0,0,0.421333260395256,0.511290967734173,1.03914401841148,0,2.25349471642689,0,2.54805239706646,7.11066703153331,1.08245520505607,1.26679932737549,1.51657333504435,0,0,1.63286352971307,2.60227990149204,2.13125834818499,1.84492397804847,1.65794904607885,2.70454026412121,1.0053327306374,2.71914464507811,0.289198713839823,0,1.13236794963186,0.220841518460394,0.969750506270444,0,2.63502717310392,2.72280718857492,0,0,0,0,4.94309110035915,14.1825186873774,22.4921290282027,4.69325664519146,5.11430914660661,5.61027720310812,7.62533936418461,2.03678727700633,0.124406970610093,0.505445516867349,1.47309299120532,3.513251959993,2.5289231487682,3.42118046630164,2.86339153887859,4.49040894398764,3.20284300712124,5.80950692270319,1.81092359517311,7.32931175971664,6.61871280587367,3.87092473160687,1.31517439456545,1.11218899690239,0.348252166522167,1.02891068203972,3.58261680273288,0,0,0,3.72826390563903,5.15957331958412,3.06105504483725,3.55117103377815,2.36117078096885,2.31400669331067,2.32533944750408,0.804820204198858,0.817357396570186,0.658239399653922,0,0.162137619091711,0,0.219550115291051,0.268412837520744,6.51898840548794,12.0398396483763,0,0,5.97207101498655,5.10920678092965,3.09281907173024,1.00841762311671,0.444756087689741,0.760902504450237,0,0.658795818896044,0,1.59165177632921,0.38992817423824,0.898819408654221,0.2161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| ||
|EntrezGene=19377 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q61818,Q5QGZ6,B1AU86 | |||
|association_with_transcript=-56bp_to_ENSMUST00000171108,NM_001037764,uc007jfl.1,uc007jfm.1_5end | |||
|description=CAGE_peak_5_at_Rai1_5end | |||
|id=chr11:59953459..59953527,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.84e-11!33;CL:0000047!3.84e-11!33;CL:0000031!3.84e-11!33;CL:0000404!3.84e-11!33;CL:0000117!5.83e-11!23;CL:0000337!5.83e-11!23;CL:0000221!1.07e-10!44;CL:0000133!1.07e-10!44;CL:0002319!1.18e-10!43;CL:0000393!5.63e-08!39;CL:0000211!5.63e-08!39;CL:0000055!1.91e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.92e-12,23;CL:0000337,8.92e-12,23;CL:0000540,3.73e-11,33;CL:0000047,3.73e-11,33;CL:0000031,3.73e-11,33;CL:0000404,3.73e-11,33;CL:0000221,4.09e-10,44;CL:0000133,4.09e-10,44;CL:0002319,4.67e-10,43;CL:0000393,7.86e-08,39;CL:0000211,7.86e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.65e-25!73;UBERON:0005743!2.65e-25!73;UBERON:0000073!3.82e-24!75;UBERON:0001016!3.82e-24!75;UBERON:0002346!2.49e-23!71;UBERON:0003075!2.49e-23!71;UBERON:0007284!2.49e-23!71;UBERON:0001049!3.81e-21!52;UBERON:0005068!3.81e-21!52;UBERON:0006241!3.81e-21!52;UBERON:0007135!3.81e-21!52;UBERON:0004121!4.03e-21!102;UBERON:0000924!4.03e-21!102;UBERON:0006601!4.03e-21!102;UBERON:0003056!2.55e-19!49;UBERON:0000955!1.09e-18!50;UBERON:0006238!1.09e-18!50;UBERON:0000033!1.33e-18!63;UBERON:0002616!4.15e-18!49;UBERON:0003080!6.55e-18!40;UBERON:0002780!1.65e-17!39;UBERON:0001890!1.65e-17!39;UBERON:0006240!1.65e-17!39;UBERON:0002020!4.17e-15!34;UBERON:0002791!1.37e-12!29;UBERON:0003528!1.37e-12!29;UBERON:0001893!1.37e-12!29;UBERON:0000153!8.17e-10!94;UBERON:0007811!1.06e-09!86;UBERON:0000956!1.16e-09!21;UBERON:0001869!1.16e-09!21;UBERON:0000203!1.16e-09!21;UBERON:0002619!2.03e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.46e-26,73;UBERON:0002346,4.13e-25,64;UBERON:0003075,4.13e-25,64;UBERON:0007284,4.13e-25,64;UBERON:0001016,2.38e-24,75;UBERON:0001049,2.30e-22,52;UBERON:0005068,2.30e-22,52;UBERON:0006241,2.30e-22,52;UBERON:0007135,2.30e-22,52;UBERON:0000073,5.41e-22,54;UBERON:0003056,7.33e-21,49;UBERON:0004121,1.05e-20,95;UBERON:0000924,1.05e-20,95;UBERON:0006601,1.05e-20,95;UBERON:0000955,1.20e-19,47;UBERON:0006238,1.20e-19,47;UBERON:0003080,2.49e-19,40;UBERON:0002616,5.11e-19,46;UBERON:0002780,6.82e-19,39;UBERON:0001890,6.82e-19,39;UBERON:0006240,6.82e-19,39;UBERON:0010371,6.85e-19,73;UBERON:0010314,8.17e-18,92;UBERON:0002020,2.79e-16,34;UBERON:0003528,1.52e-13,29;UBERON:0002791,1.52e-13,29;UBERON:0001893,1.52e-13,29;UBERON:0000956,2.29e-10,21;UBERON:0001869,2.29e-10,21;UBERON:0000203,2.29e-10,21;UBERON:0002619,6.27e-08,17 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0.129123323441576,0.563154888606667,0,0,0,0,0.0874204024189974,0,0,0.699561878128147,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.202753862439029,1.65192076945513,4.69434806608824,0.872100625521786,2.41654801007919,1.74986909166855,2.79972843250725,1.43752564364972,0,0,2.35265659399725,0.514518872071894,0,0,11.9366711907163,13.7537654610729,18.3811107016792,2.71075625655306,8.00365316500025,0.449949858640699,0,0.7104801149461,2.39680088414724,6.14749288514487,16.7977171939734,14.9856591548177,15.984697062705,5.71301968807607,6.40518768759679,15.1888591026543,20.6067762689208,28.4957823849107,1.10115880999389,2.80912143787413,3.22573719838111,15.5625819521629,13.0827330351446,10.4182674111352,1.95428099300967,1.12552522006336,3.51435969886663,8.2496003932627,4.27115042397309,8.57437450796383,0.454357159999104,0.302286240427142,0.579728977403356,0,0,0.539703191637817,0,0,0.421333260395256,0.511290967734173,1.03914401841148,0,2.25349471642689,0,2.54805239706646,7.11066703153331,1.08245520505607,1.26679932737549,1.51657333504435,0,0,1.63286352971307,2.60227990149204,2.13125834818499,1.84492397804847,1.65794904607885,2.70454026412121,1.0053327306374,2.71914464507811,0.289198713839823,0,1.13236794963186,0.220841518460394,0.969750506270444,0,2.63502717310392,2.72280718857492,0,0,0,0,4.94309110035915,14.1825186873774,22.4921290282027,4.69325664519146,5.11430914660661,5.61027720310812,7.62533936418461,2.03678727700633,0.124406970610093,0.505445516867349,1.47309299120532,3.513251959993,2.5289231487682,3.42118046630164,2.86339153887859,4.49040894398764,3.20284300712124,5.80950692270319,1.81092359517311,7.32931175971664,6.61871280587367,3.87092473160687,1.31517439456545,1.11218899690239,0.348252166522167,1.02891068203972,3.58261680273288,0,0,0,3.72826390563903,5.15957331958412,3.06105504483725,3.55117103377815,2.36117078096885,2.31400669331067,2.32533944750408,0.804820204198858,0.817357396570186,0.658239399653922,0,0.162137619091711,0,0.219550115291051,0.268412837520744,6.51898840548794,12.0398396483763,0,0,5.97207101498655,5.10920678092965,3.09281907173024,1.00841762311671,0.444756087689741,0.760902504450237,0,0.658795818896044,0,1.59165177632921,0.38992817423824,0.898819408654221,0.216138049874694,0.199141273254367,2.0863469104839,2.39921876480431,1.1270773567308,1.62921062276251,1.55161989734101,1.61312385747733,0.632365371242573,0.147610147979602,0.156998727841375,0,0.296452627087149,1.33476084572875,0.786235980452812,0.674586337154561,0.202860121388503,0.241177159752417,0.763877555344259,0,0.324270453550071,0,2.87536413054709,0,0.312037673114561,0.252578877947112,0,0,0.369506380333209,2.08440552947533,3.25929952884052,1.35796068620151,3.75504397261603,3.1826188913945,1.42826184531608,0.975668239288994,0.788175720530955,0.44292937929755,0.797273843287435,0.327726629431476,0.345369963731791,0.723245292907558,1.50791283939272,0,0,0.275936746304732,3.53211297973142,1.52375192569864,0,0,3.47059041357882,4.29482618726302,2.80050417052639,0.955875191810208,2.22798674082394,1.98153571552183,1.61924280669958,3.21481443702443,6.32460444714438,6.74774764485795,3.40656204499845,1.95872164033981,1.79175655288934,2.3095817216155,0,0.728341908464944,2.11626489875326,0.565815239267694,0.295301892880773,1.84461088766356,0,0,1.42598951353889,0,0,0,6.80879211507576,5.221771726908,7.76152102696527,6.64444808597936,5.67488747655275,6.0645397984704,4.60737257685939,5.48036908406279,3.05073220482823,6.14313005505079,0.441056796109924,0,0.161464426695906,0.482503399425247,0.358117032009409,0.164140899745061,0,4.82105785227325,0.341741761595705,1.23832120777933,0.740778109478847,0,0.136694227721025,0,1.35982743995084,0.419854356970974,1.10559979043539,0.954670618015114,3.16335993581135,1.82987520414164,1.83609079397062,2.92723614420256,2.62035076495413,2.42755823492677,2.0663363931334,0.26175594198403,0,0,0.56369293868419,4.9340460194513,4.96375471371293,5.25018208528929,4.26227417476513,7.60302564708502,6.10257640957921,5.7289929331338,5.03324853243412,1.93267296660805,0.864090018773596,0,2.02725215290164,0.924398614483445,0.77952493786677,1.07416017400489,1.19208812868759,0.600977247599844,0.147689527174577,0.403865799792591,0.228620419965,0,0.292373642219257,0.192423683280659,0,0.680191150845634,7.10355050797007,13.5467923480308,6.71538465456314,4.056981474676,1.50145980360946,4.76194223094889,1.07184189539533,1.00314420807073,6.21227026878773,5.9842280745933,5.72895513439397,4.29632955859219,4.7955776383945,3.7769694869485,3.37511250115903,4.05289082901798,2.26571204492102,6.21312374102184,3.63255716544618,7.98049746802062,6.4878770186571,4.86213434136588,5.03071590307158,2.38996560985018,1.33348036680969,2.26638562962784,2.88827288632634,1.51618327058278,2.78827229879264,1.32038438970253,2.71560371662659,2.04880487695582,1.89537047553524,3.33405583898152,2.0859178670074,1.35036454324594,3.70877310722976,2.06078488188156,3.08582327146874,1.774758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| |||
|short_description=p5@Rai1 | |||
}} |
Revision as of 20:12, 12 September 2013
Short description: | p5@Rai1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rai1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -56bp_to_ENSMUST00000171108, NM_001037764, uc007jfl.1, uc007jfm.1_5end |
EntrezGene: | Rai1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.92e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.92e-12 | 23 |
neuron | 3.73e-11 | 33 |
neuronal stem cell | 3.73e-11 | 33 |
neuroblast | 3.73e-11 | 33 |
electrically signaling cell | 3.73e-11 | 33 |
ectodermal cell | 4.09e-10 | 44 |
neurectodermal cell | 4.09e-10 | 44 |
neural cell | 4.67e-10 | 43 |
electrically responsive cell | 7.86e-08 | 39 |
electrically active cell | 7.86e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.46e-26 | 73 |
neurectoderm | 4.13e-25 | 64 |
neural plate | 4.13e-25 | 64 |
presumptive neural plate | 4.13e-25 | 64 |
nervous system | 2.38e-24 | 75 |
neural tube | 2.30e-22 | 52 |
neural rod | 2.30e-22 | 52 |
future spinal cord | 2.30e-22 | 52 |
neural keel | 2.30e-22 | 52 |
regional part of nervous system | 5.41e-22 | 54 |
pre-chordal neural plate | 7.33e-21 | 49 |
ectoderm-derived structure | 1.05e-20 | 95 |
ectoderm | 1.05e-20 | 95 |
presumptive ectoderm | 1.05e-20 | 95 |
brain | 1.20e-19 | 47 |
future brain | 1.20e-19 | 47 |
anterior neural tube | 2.49e-19 | 40 |
regional part of brain | 5.11e-19 | 46 |
regional part of forebrain | 6.82e-19 | 39 |
forebrain | 6.82e-19 | 39 |
future forebrain | 6.82e-19 | 39 |
ecto-epithelium | 6.85e-19 | 73 |
structure with developmental contribution from neural crest | 8.17e-18 | 92 |
gray matter | 2.79e-16 | 34 |
brain grey matter | 1.52e-13 | 29 |
regional part of telencephalon | 1.52e-13 | 29 |
telencephalon | 1.52e-13 | 29 |
cerebral cortex | 2.29e-10 | 21 |
cerebral hemisphere | 2.29e-10 | 21 |
pallium | 2.29e-10 | 21 |
regional part of cerebral cortex | 6.27e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.