FFCP PHASE1:Mm9::chr11:78156977..78157028,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=22248|HGNC=|UniProt=Q9Z2R6,B1AQD9,Q3V299|association_with_transcript=0bp_to_ENSMUST00000002127,ENSMUST00000108295,ENSMUST00000154700,NM_011676,uc007kjb.1_5end|description=CAGE_peak_1_at_Unc119_5end|id=chr11:78156977..78157028,+|ontology_enrichment_celltype=CL:0000117!5.77e-08!23;CL:0000337!5.77e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,5.77e-08,23;CL:0000337,5.77e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.81e-09!71;UBERON:0003075!3.81e-09!71;UBERON:0007284!3.81e-09!71;UBERON:0000991!3.65e-07!18;UBERON:0005564!3.65e-07!18;UBERON:0000033!4.61e-07!63;UBERON:0003056!6.62e-07!49;UBERON:0004176!8.62e-07!17;UBERON:0009196!8.62e-07!17;UBERON:0009117!8.62e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.35e-07,64;UBERON:0003075,1.35e-07,64;UBERON:0007284,1.35e-07,64;UBERON:0000991,3.65e-07,18;UBERON:0005564,3.65e-07,18;UBERON:0003056,6.62e-07,49;UBERON:0004176,8.62e-07,17;UBERON:0009196,8.62e-07,17;UBERON:0009117,8.62e-07,17|phase1_expression=55.5716499453635,3.83872948403297,4.54999239389536,8.16653370528441,13.023288978605,3.69334398206158,5.60670337429262,15.236552166106,5.20918271961167,6.55380673701582,2.05461561870606,3.74929147278081,6.67682846731702,4.54586092578786,16.6554880907831,19.4376256694233,11.8925519281785,44.1647031501533,33.593036233406,36.0731204028326,18.1142208021779,18.8652807281682,15.9331871374751,10.5594999043648,10.782236210157,2.8711598205751,5.1691439539089,3.878482188346,3.23039813075836,2.52030129759931,4.8780712344167,24.7661962649256,31.3683041668131,31.6963362030877,2.59966457776147,2.65975432573588,2.24586291888606,251.537510072882,170.331105106188,145.016077080742,249.998382413181,245.213329100082,220.907210629175,25.5570540490422,28.9938023287812,16.8863011988747,23.4717403304412,42.5149054941871,57.7774660591661,64.7451563917364,21.9778681951819,44.5632949531412,38.5899993932794,14.5072428402269,6.04968838456435,14.663787854049,12.8940047972441,27.3306208907044,42.0818238587963,37.0293685490423,43.7343668419264,25.4133399051849,17.7858959222228,56.2437323300874,61.3097144791524,57.5488893106341,63.5152234299018,83.3753722547773,31.5216421417772,31.5913895696156,35.1242685456808,49.1319693174542,42.4067598627098,30.0102458076637,29.8079414866715,23.8996884518605,38.540558349786,28.4742763929969,32.5645850503236,47.7428361583302,48.8544016836868,41.152156273984,34.0603258781685,46.1465340225978,36.213184723104,39.4802304534715,37.8708670925614,41.7534758648673,1.66597625333005,1.66257432234928,9.27566363845369,7.74381489283248,2.03991400112325,9.17495425784289,5.19821133958135,5.37632264516803,13.9039975930434,16.0204503223374,16.8860902991865,18.0203183000274,53.3796560953619,20.5322363862909,25.4805239706646,7.11066703153331,16.4533191168523,20.2687892380079,19.7154533555765,9.93399753555822,6.99132285847364,33.84480770678,33.6561533926304,23.4438418300349,33.4392471021285,40.5443903086555,36.4524992120685,31.6679810150782,13.5957232253906,6.50697106139602,51.3074120130927,9.22071044700232,13.0296495891632,16.9706338597328,11.1835056730873,14.0534782565543,14.6612694769419,4.85368404896324,19.6496804189709,23.9961092397363,17.662761563156,33.5531032266803,17.3850229071078,23.6230181972185,19.468323861535,18.1557974704535,30.9604186393745,24.9851545124347,31.7738815212987,24.134952298358,15.1633655060205,172.351879971022,37.0843262443706,48.5093440354628,37.4529229995126,40.3888911799716,52.5241773448251,81.0959849403099,130.901309209941,421.169087563118,40.7423506643072,31.5807153880258,30.791446728691,38.5784489072532,21.9657326888222,14.9748431604532,9.67176041117334,41.5981617650651,18.2575428701441,20.0731367549478,18.1864639613179,27.1334762021507,26.735970837845,28.4498057108403,20.8335367314985,21.0537727969722,22.0601971428951,17.672579801031,13.1453966685813,17.2812706703411,14.1521470925593,10.6708851651412,6.64764238276017,7.30999937126662,7.68425403518677,9.26024289446565,19.9775451135921,30.2539560395096,6.60837565967596,3.70230793328962,32.6331023318908,26.7072172639504,16.3661675879059,15.5296313959974,18.2349995952794,22.446623881282,10.9141684155238,25.3636390274977,29.1548842208313,26.0632978373908,24.37051088989,11.6846523125049,12.5360068927323,6.96994456390285,33.7608863696485,19.6507441688734,18.0332377076929,17.7176655225423,16.0980564349129,14.6583863570766,11.066393996745,6.34723636312289,5.65195420228949,7.40382983530803,10.6722945751374,24.0256952231175,26.3389053451692,22.4862112384854,28.6032771157789,29.4236134897949,45.5780274688741,37.975890143507,46.2085396308851,79.8973712377317,48.8811902193005,94.8959416554684,73.6408908550363,26.5207821844467,19.7337154874103,18.332853811808,17.1820466854942,43.9620075307525,21.1854469374634,17.4837438348444,15.7242466353296,13.2329943379034,21.1858840388552,24.0014386865093,17.6551361398934,15.723992965063,14.6698387164888,18.1888279334469,22.7944176062982,20.9741134943192,13.5712155545345,28.8270012423916,11.8023425524569,12.9690270763224,31.628466227595,27.7791697223522,16.5574294830442,9.84636616097055,14.1978698737316,12.1036010731958,12.2791336707695,12.4263774935327,12.4767257486141,13.0215204162863,19.02610297872,15.1973046113882,13.8350722281283,15.1021018718249,28.529957126862,40.9550888434687,26.2248004559257,15.0122811905007,6.63725691699814,20.8791347093284,20.8603254305678,10.9390946258421,13.2885851796348,11.9899707698132,14.7304127105886,12.7236805317127,12.4774082434652,7.26884543252377,8.4334886859999,7.21948802737308,6.80879211507576,37.8128297465751,48.5095064185329,41.7957218311605,29.0837983173329,24.9716344642899,24.0241570079097,26.4884505729701,27.4565898434541,35.1641237633942,9.92377791247329,6.10079135883476,8.88054346827481,15.3194829317516,15.9958940964203,10.9974402829191,9.91034844541493,25.9595422814714,25.1180194772843,31.9899645342995,21.6677597022563,22.0391094695488,12.9859516334974,28.5972716508153,24.8168507791029,31.6290282251467,27.0871948656671,8.59203556213602,36.6949752554117,14.84232110026,15.8767851008048,14.6361807210128,18.9975430459175,21.848024114341,28.5154422252409,15.4436005770577,9.72112299688447,9.32008969630389,55.2419079910507,56.068704766492,64.6942697687252,54.6407839246774,65.0965510327765,71.2994849571084,63.4902661073529,64.8417836522871,91.751926372497,50.7326653734613,43.7805609511956,6.00421129193539,76.6301313796821,55.7720497405012,38.7164052473829,21.1251500887628,16.6892338016263,14.4234539423963,13.5874365000611,7.57248374611107,8.23033511873998,9.47766140286301,5.55509920216589,5.67649865677944,9.58390597888865,2.49403421976732,26.6383144048878,10.3170935100897,18.4673078000486,23.375940877895,15.7653279378993,8.97442958909599,9.4322086794789,10.5330141847426,15.8130515932779,7.36520378411483,14.8952833494243,14.2638141345261,17.8121455140367,17.3740596399631,17.550585006027,16.2115633160719,13.1411298605419,25.3702552758392,40.9960022957498,38.306387846499,36.5369916313847,20.4209642337367,33.7477191831052,29.0472743351022,14.2237905793034,20.6035057238894,21.1806678330598,16.6780159764106,17.7435509923168,17.1649970661329,15.4508487325306,16.646539625266,18.5516564726631,13.3362233559261,18.8891451290114,16.5901929598786,18.9559514369521,15.6030855342461,12.0004238334895,19.3448628713678,13.35242663705,15.4067201630268,16.8455790943442,15.9075462836352,24.3294203920788,16.5733918205841,15.4816689784282,16.2731258780744,18.388427809247,19.2083740632349,20.4615521584845,17.5078630540142,19.4835677090953,24.4814366379187,18.9484602840781,19.5532659183951,11.6685882561994,22.5003247501906,16.6944841646703|short_description=p1@Unc119}} | ||
|EntrezGene=22248 | |||
|HGNC= | |||
|UniProt=Q9Z2R6,B1AQD9,Q3V299 | |||
|association_with_transcript=0bp_to_ENSMUST00000002127,ENSMUST00000108295,ENSMUST00000154700,NM_011676,uc007kjb.1_5end | |||
|description=CAGE_peak_1_at_Unc119_5end | |||
|id=chr11:78156977..78157028,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.77e-08!23;CL:0000337!5.77e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.77e-08,23;CL:0000337,5.77e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.81e-09!71;UBERON:0003075!3.81e-09!71;UBERON:0007284!3.81e-09!71;UBERON:0000991!3.65e-07!18;UBERON:0005564!3.65e-07!18;UBERON:0000033!4.61e-07!63;UBERON:0003056!6.62e-07!49;UBERON:0004176!8.62e-07!17;UBERON:0009196!8.62e-07!17;UBERON:0009117!8.62e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.35e-07,64;UBERON:0003075,1.35e-07,64;UBERON:0007284,1.35e-07,64;UBERON:0000991,3.65e-07,18;UBERON:0005564,3.65e-07,18;UBERON:0003056,6.62e-07,49;UBERON:0004176,8.62e-07,17;UBERON:0009196,8.62e-07,17;UBERON:0009117,8.62e-07,17 | |||
|phase1_expression=55.5716499453635,3.83872948403297,4.54999239389536,8.16653370528441,13.023288978605,3.69334398206158,5.60670337429262,15.236552166106,5.20918271961167,6.55380673701582,2.05461561870606,3.74929147278081,6.67682846731702,4.54586092578786,16.6554880907831,19.4376256694233,11.8925519281785,44.1647031501533,33.593036233406,36.0731204028326,18.1142208021779,18.8652807281682,15.9331871374751,10.5594999043648,10.782236210157,2.8711598205751,5.1691439539089,3.878482188346,3.23039813075836,2.52030129759931,4.8780712344167,24.7661962649256,31.3683041668131,31.6963362030877,2.59966457776147,2.65975432573588,2.24586291888606,251.537510072882,170.331105106188,145.016077080742,249.998382413181,245.213329100082,220.907210629175,25.5570540490422,28.9938023287812,16.8863011988747,23.4717403304412,42.5149054941871,57.7774660591661,64.7451563917364,21.9778681951819,44.5632949531412,38.5899993932794,14.5072428402269,6.04968838456435,14.663787854049,12.8940047972441,27.3306208907044,42.0818238587963,37.0293685490423,43.7343668419264,25.4133399051849,17.7858959222228,56.2437323300874,61.3097144791524,57.5488893106341,63.5152234299018,83.3753722547773,31.5216421417772,31.5913895696156,35.1242685456808,49.1319693174542,42.4067598627098,30.0102458076637,29.8079414866715,23.8996884518605,38.540558349786,28.4742763929969,32.5645850503236,47.7428361583302,48.8544016836868,41.152156273984,34.0603258781685,46.1465340225978,36.213184723104,39.4802304534715,37.8708670925614,41.7534758648673,1.66597625333005,1.66257432234928,9.27566363845369,7.74381489283248,2.03991400112325,9.17495425784289,5.19821133958135,5.37632264516803,13.9039975930434,16.0204503223374,16.8860902991865,18.0203183000274,53.3796560953619,20.5322363862909,25.4805239706646,7.11066703153331,16.4533191168523,20.2687892380079,19.7154533555765,9.93399753555822,6.99132285847364,33.84480770678,33.6561533926304,23.4438418300349,33.4392471021285,40.5443903086555,36.4524992120685,31.6679810150782,13.5957232253906,6.50697106139602,51.3074120130927,9.22071044700232,13.0296495891632,16.9706338597328,11.1835056730873,14.0534782565543,14.6612694769419,4.85368404896324,19.6496804189709,23.9961092397363,17.662761563156,33.5531032266803,17.3850229071078,23.6230181972185,19.468323861535,18.1557974704535,30.9604186393745,24.9851545124347,31.7738815212987,24.134952298358,15.1633655060205,172.351879971022,37.0843262443706,48.5093440354628,37.4529229995126,40.3888911799716,52.5241773448251,81.0959849403099,130.901309209941,421.169087563118,40.7423506643072,31.5807153880258,30.791446728691,38.5784489072532,21.9657326888222,14.9748431604532,9.67176041117334,41.5981617650651,18.2575428701441,20.0731367549478,18.1864639613179,27.1334762021507,26.735970837845,28.4498057108403,20.8335367314985,21.0537727969722,22.0601971428951,17.672579801031,13.1453966685813,17.2812706703411,14.1521470925593,10.6708851651412,6.64764238276017,7.30999937126662,7.68425403518677,9.26024289446565,19.9775451135921,30.2539560395096,6.60837565967596,3.70230793328962,32.6331023318908,26.7072172639504,16.3661675879059,15.5296313959974,18.2349995952794,22.446623881282,10.9141684155238,25.3636390274977,29.1548842208313,26.0632978373908,24.37051088989,11.6846523125049,12.5360068927323,6.96994456390285,33.7608863696485,19.6507441688734,18.0332377076929,17.7176655225423,16.0980564349129,14.6583863570766,11.066393996745,6.34723636312289,5.65195420228949,7.40382983530803,10.6722945751374,24.0256952231175,26.3389053451692,22.4862112384854,28.6032771157789,29.4236134897949,45.5780274688741,37.975890143507,46.2085396308851,79.8973712377317,48.8811902193005,94.8959416554684,73.6408908550363,26.5207821844467,19.7337154874103,18.332853811808,17.1820466854942,43.9620075307525,21.1854469374634,17.4837438348444,15.7242466353296,13.2329943379034,21.1858840388552,24.0014386865093,17.6551361398934,15.723992965063,14.6698387164888,18.1888279334469,22.7944176062982,20.9741134943192,13.5712155545345,28.8270012423916,11.8023425524569,12.9690270763224,31.628466227595,27.7791697223522,16.5574294830442,9.84636616097055,14.1978698737316,12.1036010731958,12.2791336707695,12.4263774935327,12.4767257486141,13.0215204162863,19.02610297872,15.1973046113882,13.8350722281283,15.1021018718249,28.529957126862,40.9550888434687,26.2248004559257,15.0122811905007,6.63725691699814,20.8791347093284,20.8603254305678,10.9390946258421,13.2885851796348,11.9899707698132,14.7304127105886,12.7236805317127,12.4774082434652,7.26884543252377,8.4334886859999,7.21948802737308,6.80879211507576,37.8128297465751,48.5095064185329,41.7957218311605,29.0837983173329,24.9716344642899,24.0241570079097,26.4884505729701,27.4565898434541,35.1641237633942,9.92377791247329,6.10079135883476,8.88054346827481,15.3194829317516,15.9958940964203,10.9974402829191,9.91034844541493,25.9595422814714,25.1180194772843,31.9899645342995,21.6677597022563,22.0391094695488,12.9859516334974,28.5972716508153,24.8168507791029,31.6290282251467,27.0871948656671,8.59203556213602,36.6949752554117,14.84232110026,15.8767851008048,14.6361807210128,18.9975430459175,21.848024114341,28.5154422252409,15.4436005770577,9.72112299688447,9.32008969630389,55.2419079910507,56.068704766492,64.6942697687252,54.6407839246774,65.0965510327765,71.2994849571084,63.4902661073529,64.8417836522871,91.751926372497,50.7326653734613,43.7805609511956,6.00421129193539,76.6301313796821,55.7720497405012,38.7164052473829,21.1251500887628,16.6892338016263,14.4234539423963,13.5874365000611,7.57248374611107,8.23033511873998,9.47766140286301,5.55509920216589,5.67649865677944,9.58390597888865,2.49403421976732,26.6383144048878,10.3170935100897,18.4673078000486,23.375940877895,15.7653279378993,8.97442958909599,9.4322086794789,10.5330141847426,15.8130515932779,7.36520378411483,14.8952833494243,14.2638141345261,17.8121455140367,17.3740596399631,17.550585006027,16.2115633160719,13.1411298605419,25.3702552758392,40.9960022957498,38.306387846499,36.5369916313847,20.4209642337367,33.7477191831052,29.0472743351022,14.2237905793034,20.6035057238894,21.1806678330598,16.6780159764106,17.7435509923168,17.1649970661329,15.4508487325306,16.646539625266,18.5516564726631,13.3362233559261,18.8891451290114,16.5901929598786,18.9559514369521,15.6030855342461,12.0004238334895,19.3448628713678,13.35242663705,15.4067201630268,16.8455790943442,15.9075462836352,24.3294203920788,16.5733918205841,15.4816689784282,16.2731258780744,18.388427809247,19.2083740632349,20.4615521584845,17.5078630540142,19.4835677090953,24.4814366379187,18.9484602840781,19.5532659183951,11.6685882561994,22.5003247501906,16.6944841646703 | |||
|short_description=p1@Unc119 | |||
}} | |||
Revision as of 21:03, 12 September 2013
| Short description: | p1@Unc119 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Unc119_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000002127, ENSMUST00000108295, ENSMUST00000154700, NM_011676, uc007kjb.1_5end |
| EntrezGene: | Unc119 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 5.77e-08 | 23 |
| neuroblast (sensu Vertebrata) | 5.77e-08 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| neurectoderm | 1.35e-07 | 64 |
| neural plate | 1.35e-07 | 64 |
| presumptive neural plate | 1.35e-07 | 64 |
| gonad | 3.65e-07 | 18 |
| gonad primordium | 3.65e-07 | 18 |
| pre-chordal neural plate | 6.62e-07 | 49 |
| external genitalia | 8.62e-07 | 17 |
| indifferent external genitalia | 8.62e-07 | 17 |
| indifferent gonad | 8.62e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
