FFCP PHASE1:Mm9::chr11:88922011..88922113,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56077|HGNC=|MCL_coexpression_id=113|UniProt=Q9R1C6,F2Z490|association_with_transcript=0bp_to_ENSMUST00000000285,ENSMUST00000152772,NM_019505_5end|description=CAGE_peak_1_at_Dgke_5end|id=chr11:88922011..88922113,-|ontology_enrichment_celltype=CL:0000117!2.29e-08!23;CL:0000337!2.29e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-08,23;CL:0000337,2.29e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!3.51e-19!86;UBERON:0000153!1.05e-16!94;UBERON:0000033!3.09e-13!63;UBERON:0000955!7.59e-13!50;UBERON:0006238!7.59e-13!50;UBERON:0001049!1.29e-12!52;UBERON:0005068!1.29e-12!52;UBERON:0006241!1.29e-12!52;UBERON:0007135!1.29e-12!52;UBERON:0002616!2.59e-12!49;UBERON:0002346!6.85e-12!71;UBERON:0003075!6.85e-12!71;UBERON:0007284!6.85e-12!71;UBERON:0002020!1.27e-11!34;UBERON:0004121!4.50e-11!102;UBERON:0000924!4.50e-11!102;UBERON:0006601!4.50e-11!102;UBERON:0003056!9.86e-11!49;UBERON:0002791!1.76e-10!29;UBERON:0003528!1.76e-10!29;UBERON:0001893!1.76e-10!29;UBERON:0003080!3.03e-10!40;UBERON:0001017!5.47e-10!73;UBERON:0005743!5.47e-10!73;UBERON:0002780!1.02e-09!39;UBERON:0001890!1.02e-09!39;UBERON:0006240!1.02e-09!39;UBERON:0000477!2.81e-09!154;UBERON:0000073!4.17e-09!75;UBERON:0001016!4.17e-09!75;UBERON:0000064!1.90e-08!99;UBERON:0000483!3.45e-07!181;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-13,54;UBERON:0010371,1.70e-13,73;UBERON:0010314,2.35e-13,92;UBERON:0001049,1.29e-12,52;UBERON:0005068,1.29e-12,52;UBERON:0006241,1.29e-12,52;UBERON:0007135,1.29e-12,52;UBERON:0002346,2.50e-12,64;UBERON:0003075,2.50e-12,64;UBERON:0007284,2.50e-12,64;UBERON:0002020,1.26e-11,34;UBERON:0000955,2.23e-11,47;UBERON:0006238,2.23e-11,47;UBERON:0004121,3.57e-11,95;UBERON:0000924,3.57e-11,95;UBERON:0006601,3.57e-11,95;UBERON:0002616,7.31e-11,46;UBERON:0003056,9.85e-11,49;UBERON:0003528,1.76e-10,29;UBERON:0002791,1.76e-10,29;UBERON:0001893,1.76e-10,29;UBERON:0003080,3.03e-10,40;UBERON:0001017,5.47e-10,73;UBERON:0002780,1.02e-09,39;UBERON:0001890,1.02e-09,39;UBERON:0006240,1.02e-09,39;UBERON:0001016,4.17e-09,75;UBERON:0000956,4.51e-07,21;UBERON:0001869,4.51e-07,21;UBERON:0000203,4.51e-07,21;UBERON:0000483,5.26e-07,174|phase1_expression=9.12848428497326,1.04692622291808,2.27499619694768,2.72217790176147,4.50806156951712,4.8684988854448,3.03696432774183,11.879345756625,8.024957162645,8.19225842126977,5.30775701499065,6.62108919661292,14.8944635040149,13.8998439846206,4.33042690360362,6.47920855647443,4.19737126876888,13.4071420277251,14.3970155286026,9.76096199135469,13.7770130044733,4.26951090163807,6.52999472847338,2.23989391910769,2.06468352960453,2.29692785646008,0.430761996159075,3.878482188346,2.47030445293286,3.52842181663903,4.21287970245079,2.54012269383853,5.53558308826113,0,4.04392267651784,4.3221007793208,4.28755648150975,0,0.7813353445238,0,1.17646297606203,0,0,3.77690453926732,5.47435428585379,4.77221555620372,3.9119567217402,2.18025156380447,2.19686182734472,4.27745777963423,2.79972843250725,1.43752564364972,22.1473039996212,21.7608642603403,16.4685961579807,3.34437266846731,4.29800159908135,3.09403255366465,17.601532094785,19.0436752537932,13.3104594736298,1.35537812827653,1.77858959222228,1.7997994345628,0.988866362566974,2.8419204597844,2.69640099466564,2.68952813725088,13.9980976616445,14.4456354014909,13.4607975264884,8.56952953211411,7.95126747425809,12.7390431183552,10.0637744569148,5.51531271966013,36.3382407297983,28.9850257453376,36.4047483817297,18.7278528576875,14.9124859071928,16.6692278578163,35.177057874174,28.138130501584,28.2676758387099,19.4454866412621,13.3829379951157,16.9623495701024,3.55913108665965,4.00529268565963,8.69593466105033,1.72084775396277,2.719885334831,1.07940638327563,1.94932925234301,4.48026887097336,5.05599912474307,0.340860645156116,0.519572009205738,1.06001872353102,5.35204995151386,2.56652954828636,5.09610479413291,0,2.59789249213457,2.53359865475099,1.51657333504435,4.90990682791958,9.58070169494535,13.8051189330287,4.3371331691534,7.61163695780353,6.45723392316964,4.37095657602605,9.17191915658498,7.79132866243988,7.41584903203122,9.9773556274739,0.884610551949874,5.17653919831709,6.62524555381181,6.78825354389311,16.775258509631,55.9211322292055,44.6121485512659,3.57639877292028,5.51149572727233,4.19931911695385,5.20987930999565,43.1397041485889,35.6850470198529,25.00521607046,44.4990259692228,43.7273432034865,38.0252121543995,36.0175604010422,3.56437773476107,7.34001126599549,6.31806896084187,41.6674874655218,5.59517904739626,3.67843367093557,5.22180176435513,5.12396380641431,10.4776208693045,15.2455327138971,17.0537138698706,72.9543505484024,3.88022387279116,4.16033376369202,5.98233822157426,5.2606975782618,6.11703948296315,3.48252166522167,4.93877127379064,2.7864797354589,4.91549231119264,2.05878325691772,6.53576048609863,7.04227626620706,6.56672967947069,5.22179978236943,9.94327889457883,11.0187969778546,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| ||
|EntrezGene=56077 | |||
|HGNC= | |||
|MCL_coexpression_id=113 | |||
|UniProt=Q9R1C6,F2Z490 | |||
|association_with_transcript=0bp_to_ENSMUST00000000285,ENSMUST00000152772,NM_019505_5end | |||
|description=CAGE_peak_1_at_Dgke_5end | |||
|id=chr11:88922011..88922113,- | |||
|ontology_enrichment_celltype=CL:0000117!2.29e-08!23;CL:0000337!2.29e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.29e-08,23;CL:0000337,2.29e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!3.51e-19!86;UBERON:0000153!1.05e-16!94;UBERON:0000033!3.09e-13!63;UBERON:0000955!7.59e-13!50;UBERON:0006238!7.59e-13!50;UBERON:0001049!1.29e-12!52;UBERON:0005068!1.29e-12!52;UBERON:0006241!1.29e-12!52;UBERON:0007135!1.29e-12!52;UBERON:0002616!2.59e-12!49;UBERON:0002346!6.85e-12!71;UBERON:0003075!6.85e-12!71;UBERON:0007284!6.85e-12!71;UBERON:0002020!1.27e-11!34;UBERON:0004121!4.50e-11!102;UBERON:0000924!4.50e-11!102;UBERON:0006601!4.50e-11!102;UBERON:0003056!9.86e-11!49;UBERON:0002791!1.76e-10!29;UBERON:0003528!1.76e-10!29;UBERON:0001893!1.76e-10!29;UBERON:0003080!3.03e-10!40;UBERON:0001017!5.47e-10!73;UBERON:0005743!5.47e-10!73;UBERON:0002780!1.02e-09!39;UBERON:0001890!1.02e-09!39;UBERON:0006240!1.02e-09!39;UBERON:0000477!2.81e-09!154;UBERON:0000073!4.17e-09!75;UBERON:0001016!4.17e-09!75;UBERON:0000064!1.90e-08!99;UBERON:0000483!3.45e-07!181;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-13,54;UBERON:0010371,1.70e-13,73;UBERON:0010314,2.35e-13,92;UBERON:0001049,1.29e-12,52;UBERON:0005068,1.29e-12,52;UBERON:0006241,1.29e-12,52;UBERON:0007135,1.29e-12,52;UBERON:0002346,2.50e-12,64;UBERON:0003075,2.50e-12,64;UBERON:0007284,2.50e-12,64;UBERON:0002020,1.26e-11,34;UBERON:0000955,2.23e-11,47;UBERON:0006238,2.23e-11,47;UBERON:0004121,3.57e-11,95;UBERON:0000924,3.57e-11,95;UBERON:0006601,3.57e-11,95;UBERON:0002616,7.31e-11,46;UBERON:0003056,9.85e-11,49;UBERON:0003528,1.76e-10,29;UBERON:0002791,1.76e-10,29;UBERON:0001893,1.76e-10,29;UBERON:0003080,3.03e-10,40;UBERON:0001017,5.47e-10,73;UBERON:0002780,1.02e-09,39;UBERON:0001890,1.02e-09,39;UBERON:0006240,1.02e-09,39;UBERON:0001016,4.17e-09,75;UBERON:0000956,4.51e-07,21;UBERON:0001869,4.51e-07,21;UBERON:0000203,4.51e-07,21;UBERON:0000483,5.26e-07,174 | |||
|phase1_expression=9.12848428497326,1.04692622291808,2.27499619694768,2.72217790176147,4.50806156951712,4.8684988854448,3.03696432774183,11.879345756625,8.024957162645,8.19225842126977,5.30775701499065,6.62108919661292,14.8944635040149,13.8998439846206,4.33042690360362,6.47920855647443,4.19737126876888,13.4071420277251,14.3970155286026,9.76096199135469,13.7770130044733,4.26951090163807,6.52999472847338,2.23989391910769,2.06468352960453,2.29692785646008,0.430761996159075,3.878482188346,2.47030445293286,3.52842181663903,4.21287970245079,2.54012269383853,5.53558308826113,0,4.04392267651784,4.3221007793208,4.28755648150975,0,0.7813353445238,0,1.17646297606203,0,0,3.77690453926732,5.47435428585379,4.77221555620372,3.9119567217402,2.18025156380447,2.19686182734472,4.27745777963423,2.79972843250725,1.43752564364972,22.1473039996212,21.7608642603403,16.4685961579807,3.34437266846731,4.29800159908135,3.09403255366465,17.601532094785,19.0436752537932,13.3104594736298,1.35537812827653,1.77858959222228,1.7997994345628,0.988866362566974,2.8419204597844,2.69640099466564,2.68952813725088,13.9980976616445,14.4456354014909,13.4607975264884,8.56952953211411,7.95126747425809,12.7390431183552,10.0637744569148,5.51531271966013,36.3382407297983,28.9850257453376,36.4047483817297,18.7278528576875,14.9124859071928,16.6692278578163,35.177057874174,28.138130501584,28.2676758387099,19.4454866412621,13.3829379951157,16.9623495701024,3.55913108665965,4.00529268565963,8.69593466105033,1.72084775396277,2.719885334831,1.07940638327563,1.94932925234301,4.48026887097336,5.05599912474307,0.340860645156116,0.519572009205738,1.06001872353102,5.35204995151386,2.56652954828636,5.09610479413291,0,2.59789249213457,2.53359865475099,1.51657333504435,4.90990682791958,9.58070169494535,13.8051189330287,4.3371331691534,7.61163695780353,6.45723392316964,4.37095657602605,9.17191915658498,7.79132866243988,7.41584903203122,9.9773556274739,0.884610551949874,5.17653919831709,6.62524555381181,6.78825354389311,16.775258509631,55.9211322292055,44.6121485512659,3.57639877292028,5.51149572727233,4.19931911695385,5.20987930999565,43.1397041485889,35.6850470198529,25.00521607046,44.4990259692228,43.7273432034865,38.0252121543995,36.0175604010422,3.56437773476107,7.34001126599549,6.31806896084187,41.6674874655218,5.59517904739626,3.67843367093557,5.22180176435513,5.12396380641431,10.4776208693045,15.2455327138971,17.0537138698706,72.9543505484024,3.88022387279116,4.16033376369202,5.98233822157426,5.2606975782618,6.11703948296315,3.48252166522167,4.93877127379064,2.7864797354589,4.91549231119264,2.05878325691772,6.53576048609863,7.04227626620706,6.56672967947069,5.22179978236943,9.94327889457883,11.0187969778546,7.71335564436891,8.8362899005155,9.92611585178591,10.5088808130453,11.3546296440302,13.6258995185649,16.5380371473546,16.5205985790626,12.5143565715899,14.3600868073598,37.4316108444146,26.4464853814761,5.94753809370836,2.64450566663544,2.98603550749328,6.50262681209228,5.28356591420583,6.45387278794696,4.66993892074228,4.1849637744763,6.64340686162316,4.94096864172033,3.77002813200404,5.37182474511107,4.874102177978,4.49409704327111,3.8904848977445,5.77509692437665,4.74169752382704,4.68418901699888,5.63538678365402,4.68398054044223,4.84881217919064,5.04977903210294,5.69128834118316,6.34723636312289,4.55296310739987,6.91024117962083,3.26097889795864,2.8363667971736,3.73462090715086,2.02375901146368,1.82574109249653,2.65294875727659,3.56476192493988,4.02774592431135,3.08056930872567,3.29473695825698,4.31304619582064,5.58211421502755,5.30464044294753,4.79899868099512,3.58794827043824,3.37710464954357,13.1174765018289,3.7898282354097,4.88894929326078,6.11082308790677,5.86725620721255,9.21284415929987,9.99783291721258,8.58588050574315,11.1920952315396,14.3952048271704,14.0320196418589,11.9620219742489,9.49767400262426,16.7792907954553,1.50791283939272,3.26343410291226,11.3105782794378,9.3818493743609,40.6192992669114,34.1086007983311,2.13115428989678,6.5642441073137,1.89304931649754,6.63745865304285,7.53981892064796,5.01834475700359,3.7875774594007,5.09537755419898,3.64329631507405,4.9683495844923,5.92931666919785,40.1651645527259,7.66476460124651,4.62970569534864,6.67836533349662,7.58862565673663,6.63725691699814,3.64170954232472,2.41858845571801,4.33791683438566,3.83892460745005,4.61152721915891,5.94385074286909,5.45300594216258,5.34746067577082,9.48110273807448,5.27093042874994,10.3135543248187,23.8307724027652,4.14140516272013,5.04498866752743,6.64444808597936,7.62563004661776,6.95638388648075,8.06290200950393,3.65357938937519,10.3255551548033,10.3797714723272,5.51320995137405,9.72828892354732,9.04200789497071,9.288190438936,8.11731939221328,9.84845398470368,4.37221254944776,37.2704857041124,5.98048082792484,6.81076664278634,4.07427960213366,5.65105371014073,7.24479406921433,6.17701067657611,8.15896463970505,8.11718423477216,7.32459861163446,4.77335309007557,4.58687190692646,5.08298667817122,4.10420295122845,5.01811910434725,7.20596460362386,5.39457385539283,7.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| |||
|short_description=p1@Dgke | |||
}} |
Revision as of 21:26, 12 September 2013
Short description: | p1@Dgke |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dgke_5end |
Coexpression cluster: | MCL_coexpression_mm9:113 |
Association with transcript: | 0bp_to_ENSMUST00000000285, ENSMUST00000152772, NM_019505_5end |
EntrezGene: | Dgke |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.29e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.29e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.38e-13 | 54 |
ecto-epithelium | 1.70e-13 | 73 |
structure with developmental contribution from neural crest | 2.35e-13 | 92 |
neural tube | 1.29e-12 | 52 |
neural rod | 1.29e-12 | 52 |
future spinal cord | 1.29e-12 | 52 |
neural keel | 1.29e-12 | 52 |
neurectoderm | 2.50e-12 | 64 |
neural plate | 2.50e-12 | 64 |
presumptive neural plate | 2.50e-12 | 64 |
gray matter | 1.26e-11 | 34 |
brain | 2.23e-11 | 47 |
future brain | 2.23e-11 | 47 |
ectoderm-derived structure | 3.57e-11 | 95 |
ectoderm | 3.57e-11 | 95 |
presumptive ectoderm | 3.57e-11 | 95 |
regional part of brain | 7.31e-11 | 46 |
pre-chordal neural plate | 9.85e-11 | 49 |
brain grey matter | 1.76e-10 | 29 |
regional part of telencephalon | 1.76e-10 | 29 |
telencephalon | 1.76e-10 | 29 |
anterior neural tube | 3.03e-10 | 40 |
central nervous system | 5.47e-10 | 73 |
regional part of forebrain | 1.02e-09 | 39 |
forebrain | 1.02e-09 | 39 |
future forebrain | 1.02e-09 | 39 |
nervous system | 4.17e-09 | 75 |
cerebral cortex | 4.51e-07 | 21 |
cerebral hemisphere | 4.51e-07 | 21 |
pallium | 4.51e-07 | 21 |
epithelium | 5.26e-07 | 174 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.