FFCP PHASE1:Hg19::chr3:139258825..139258837,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5947|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9919|TSSclassifier=S|UniProt=P09455,F2Z2F2,E7EWV0|association_with_transcript=-154bp_to_ENST00000232219,ENST00000492918,NM_001130992,NM_001130993,NM_002899,uc003eti.2,uc010huj.2,uc011bmx.1,uc011bmy.1_5end|description=CAGE_peak_8_at_RBP1_5end|id=chr3:139258825..139258837,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002569;6.33e-08;6|ontology_enrichment_celltype_v019_2=CL:0002569,6.78e-08,6|ontology_enrichment_development_v019=UBERON:0006215;1.60e-14;3!UBERON:0003056;1.60e-14;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!5.52e-17!69;UBERON:0006238!5.52e-17!69;UBERON:0005743!2.90e-16!86;UBERON:0000033!6.61e-16!123;UBERON:0004733!4.44e-15!12;UBERON:0002028!4.44e-15!12;UBERON:0007277!4.44e-15!12;UBERON:0000153!9.91e-15!129;UBERON:0007811!9.91e-15!129;UBERON:0000073!5.25e-14!94;UBERON:0001016!5.25e-14!94;UBERON:0003075!7.11e-14!86;UBERON:0007284!7.11e-14!86;UBERON:0004732!9.01e-14!13;UBERON:0002616!2.11e-13!59;UBERON:0001017!3.10e-13!82;UBERON:0002346!6.12e-13!90;UBERON:0002680!1.14e-12!9;UBERON:0001895!1.14e-12!9;UBERON:0010092!1.14e-12!9;UBERON:0003076!1.11e-11!15;UBERON:0003057!1.11e-11!15;UBERON:0001049!3.84e-11!57;UBERON:0005068!3.84e-11!57;UBERON:0006241!3.84e-11!57;UBERON:0007135!3.84e-11!57;UBERON:0004121!1.18e-10!169;UBERON:0000924!3.40e-10!173;UBERON:0006601!3.40e-10!173;UBERON:0007023!2.06e-09!115;UBERON:0000064!1.18e-08!219;UBERON:0000966!1.88e-08!5;UBERON:0005388!1.88e-08!5;UBERON:0001802!1.88e-08!5;UBERON:0000988!2.71e-08!3;UBERON:0000481!2.95e-08!347;UBERON:0000119!6.68e-08!312;UBERON:0000477!8.26e-08!286;UBERON:0000475!8.29e-08!365;UBERON:0002298!1.35e-07!8;UBERON:0000483!1.39e-07!309;UBERON:0004111!1.51e-07!241;UBERON:0000025!4.46e-07!194;UBERON:0003056!7.81e-07!61|ontology_enrichment_uberon_v019=UBERON:0001905;4.66e-21;2!UBERON:0002757;4.66e-21;2!UBERON:0010134;4.66e-21;2!UBERON:0005408;4.66e-21;2!UBERON:0001899;4.66e-21;2!UBERON:0003296;3.10e-11;4!UBERON:0010133;3.10e-11;4!UBERON:0002784;3.10e-11;4!UBERON:0000966;2.97e-09;5!UBERON:0005388;2.97e-09;5!UBERON:0001802;2.97e-09;5!UBERON:0002037;6.33e-08;6!UBERON:0003422;6.33e-08;6!UBERON:0001894;5.70e-07;7!UBERON:0003104;5.70e-07;7!UBERON:0009142;5.70e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0002037,5.54e-08,6;UBERON:0006215,5.54e-08,6;UBERON:0000966,5.92e-08,6;UBERON:0005388,5.92e-08,6;UBERON:0001802,5.92e-08,6;UBERON:0003422,6.78e-08,6;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,1.08524321078289,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9919 | |||
|TSSclassifier=S | |||
|UniProt=P09455,F2Z2F2,E7EWV0 | |||
|association_with_transcript=-154bp_to_ENST00000232219,ENST00000492918,NM_001130992,NM_001130993,NM_002899,uc003eti.2,uc010huj.2,uc011bmx.1,uc011bmy.1_5end | |||
|description=CAGE_peak_8_at_RBP1_5end | |||
|id=chr3:139258825..139258837,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002569;6.33e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,6.78e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.60e-14;3!UBERON:0003056;1.60e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!5.52e-17!69;UBERON:0006238!5.52e-17!69;UBERON:0005743!2.90e-16!86;UBERON:0000033!6.61e-16!123;UBERON:0004733!4.44e-15!12;UBERON:0002028!4.44e-15!12;UBERON:0007277!4.44e-15!12;UBERON:0000153!9.91e-15!129;UBERON:0007811!9.91e-15!129;UBERON:0000073!5.25e-14!94;UBERON:0001016!5.25e-14!94;UBERON:0003075!7.11e-14!86;UBERON:0007284!7.11e-14!86;UBERON:0004732!9.01e-14!13;UBERON:0002616!2.11e-13!59;UBERON:0001017!3.10e-13!82;UBERON:0002346!6.12e-13!90;UBERON:0002680!1.14e-12!9;UBERON:0001895!1.14e-12!9;UBERON:0010092!1.14e-12!9;UBERON:0003076!1.11e-11!15;UBERON:0003057!1.11e-11!15;UBERON:0001049!3.84e-11!57;UBERON:0005068!3.84e-11!57;UBERON:0006241!3.84e-11!57;UBERON:0007135!3.84e-11!57;UBERON:0004121!1.18e-10!169;UBERON:0000924!3.40e-10!173;UBERON:0006601!3.40e-10!173;UBERON:0007023!2.06e-09!115;UBERON:0000064!1.18e-08!219;UBERON:0000966!1.88e-08!5;UBERON:0005388!1.88e-08!5;UBERON:0001802!1.88e-08!5;UBERON:0000988!2.71e-08!3;UBERON:0000481!2.95e-08!347;UBERON:0000119!6.68e-08!312;UBERON:0000477!8.26e-08!286;UBERON:0000475!8.29e-08!365;UBERON:0002298!1.35e-07!8;UBERON:0000483!1.39e-07!309;UBERON:0004111!1.51e-07!241;UBERON:0000025!4.46e-07!194;UBERON:0003056!7.81e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.66e-21;2!UBERON:0002757;4.66e-21;2!UBERON:0010134;4.66e-21;2!UBERON:0005408;4.66e-21;2!UBERON:0001899;4.66e-21;2!UBERON:0003296;3.10e-11;4!UBERON:0010133;3.10e-11;4!UBERON:0002784;3.10e-11;4!UBERON:0000966;2.97e-09;5!UBERON:0005388;2.97e-09;5!UBERON:0001802;2.97e-09;5!UBERON:0002037;6.33e-08;6!UBERON:0003422;6.33e-08;6!UBERON:0001894;5.70e-07;7!UBERON:0003104;5.70e-07;7!UBERON:0009142;5.70e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0002037,5.54e-08,6;UBERON:0006215,5.54e-08,6;UBERON:0000966,5.92e-08,6;UBERON:0005388,5.92e-08,6;UBERON:0001802,5.92e-08,6;UBERON:0003422,6.78e-08,6;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,1.08524321078289,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0.78494864019923,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0,0,0.332787154610557,0.124192805882767,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0.183428598521679,0,0,0,0,1.27857558193737,0,0.781514011233092,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,1.07140367175657,0,0,0.227662191351298,0,0,0,0.203909198930495,0.131545547125698,0,0,0,0,0,0,0,0,1.42953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45178432815584,0.109940516745429,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@RBP1 | |||
}} |
Revision as of 21:47, 12 September 2013
Short description: | p8@RBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_RBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -154bp_to_ENST00000232219, ENST00000492918, NM_001130992, NM_001130993, NM_002899, uc003eti.2, uc010huj.2, uc011bmx.1, uc011bmy.1_5end |
EntrezGene: | RBP1 |
HGNC: | 9919 |
UniProt: | P09455F2Z2F2E7EWV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.96e-21 | 2 |
regional part of epithalamus | 6.96e-21 | 2 |
secretory circumventricular organ | 6.96e-21 | 2 |
circumventricular organ | 6.96e-21 | 2 |
epithalamus | 6.96e-21 | 2 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
regional part of diencephalon | 3.79e-11 | 4 |
cerebellum | 5.54e-08 | 6 |
rhombic lip | 5.54e-08 | 6 |
retina | 5.92e-08 | 6 |
photoreceptor array | 5.92e-08 | 6 |
posterior segment of eyeball | 5.92e-08 | 6 |
mesenchyme of umbilical cord | 6.78e-08 | 6 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.