FFCP PHASE1:Hg19::chr3:160122245..160122270,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10051|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14013|TSSclassifier=S|UniProt=|association_with_transcript=-16bp_to_ENST00000487747_5end|coexpression_cluster_id=C1923|description=CAGE_peak_7_at_SMC4_5end|id=chr3:160122245..160122270,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.10e-33!235;DOID:14566!2.18e-32!239;DOID:2531!2.11e-16!51;DOID:0060083!2.11e-16!51;DOID:0050686!8.70e-16!137;DOID:0050687!2.29e-15!143;DOID:1240!6.98e-13!39;DOID:305!9.98e-12!106;DOID:8692!2.14e-09!31|ontology_enrichment_disease_v019=DOID:1240;1.98e-09;39!DOID:8692;4.42e-09;31!DOID:2531;2.31e-08;51!DOID:0060083;2.31e-08;51|ontology_enrichment_disease_v019_2=DOID:162,2.09e-20,235;DOID:14566,1.31e-19,239;DOID:1240,7.70e-12,39;DOID:2531,1.51e-11,51;DOID:0060083,1.51e-11,51;DOID:0050687,7.63e-10,143;DOID:0050686,2.92e-09,137;DOID:8692,4.39e-09,31;DOID:305,7.07e-07,106|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0.331397375727916,0,1.20538905604795,0,0,0,0.204000691244253,0,0.572471974262113,2.05311637609326,2.25976751270645,0.916960868975415,0.821005894499457,0.708397031823113,0,0,0,0,0,0,0.774672005803016,0.284338464974843,0,0,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0.251248665256743,0,0,0,0,0,0,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0,0.786021525498329,0.616804496998528,0,0,0,0,0.111410456885174,0.294605907474837,0.664601683750863,0,0.768547918354051,0.520237390239513,1.15106533222573,0,0,0,0,0,0.226618685395132,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.472674085820339,0.665188192387692,1.22968699970376,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.825354125820202,0,0,0,0,0,0,0.488124115096339,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.633152558322899,0,0.573673241497627,1.06400514659507,0,0,0,0,0.269421344139376,0.490385709340376,0,0,0,0.624320153660641,0,0.298897361103602,0.117434498643765,0.485618833104395,0.140450806702248,0.204154171254893,3.0708579327942,0,0,0.989067717114227,0,0,0.505008341862199,0.375355559615893,0,0,0,0.150238058906597,0.226864366320042,1.61450672119976,0,0.211931901159562,0.300091096084402,0.309157587715317,0,0,0.675105328965065,0.0974370051611986,0.504867548488229,0.184099797284599,0.161646056818812,1.42003837006646,0.10075209822764,0.339121184620975,0,0,0,0.609868530647977,0.397589304964456,0,1.96956004529204,1.00928340350251,0.72995471815166,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0.354920400119532,1.18009283054671,1.20505514941741,0.55146986366197,0.435758888184812,0.474541238222193,1.21348177344148,0.588664395376038,1.53898862778556,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0.686271241194102,0.109750285408626,0,1.80952150340936,0.0925884451585296,0,0,0,0.115930404975077,0,0.144366447761074,0,0.761016608938393,0,0,0,0,0.297262324577456,0,0.16798212819886,0,0.806026704325635,1.45316969256981,0.383382679165211,0,0.176096868026452,0.207328115540772,0,0,0.253991577168676,0,0,0,0.514137463516618,1.20137223137567,0,0,0,0.1466765716419,0,0,1.690605505112,0.531876233169741,0,0.514414748524284,0,0,0.714889968290738,0.542621605391443,0.823240336780769,0.325736184293735,0.710783897485092,0.791951872933429,0,0,0.399891964728228,0,0,4.21667878966063,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.358121926479791,2.01753259188349,0,0.431255149719035,0.641715181398742,0,0,0.773288812777695,0.335032530668698,0,1.49801404789436,2.99161459204025,0,0,0,0,0,0.356857977594324,0.157702415033935,0.585707074963566,0,0,0,1.32845119707087,0,0.347534457872331,0,0,0,0.431428401637234,0,0,0,0.30239029332968,0,0.153461973288062,0.841980283299221,0.128139149255701,0,0,0,3.85524234506639,0.177561725313127,0.328508624055237,2.07701771673448,0.813472649219715,0.362578348774867,0,0.644566922551274,0,2.54927635209404,0,0,0.308061348417659,0,0,0.527758144464379,0,0,2.37507507712353,0,0,0,0,0.831076008928724,0.223874754722178,1.31555925987561,0,0.769350375349168,0,0,0.206082023295445,2.93022287418699,0.330037999682352,0,0,0,0.096670718292122,1.07834031980251,0.460511024178389,0,0.751941714077915,1.45016693914229,1.19317278382541,0,0,0.192190067365106,0,0.10115778085555,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0.855877976067841,0,0,0,0.823611089208164,0.235624804691373,0,1.58510321173008,0,0,0,0,0,0.848432591722276,0,0,0,0,0,0,0,0,0.563391205064483,0.430234056612155,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10051 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14013 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENST00000487747_5end | |||
|coexpression_cluster_id=C1923 | |||
|description=CAGE_peak_7_at_SMC4_5end | |||
|id=chr3:160122245..160122270,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.10e-33!235;DOID:14566!2.18e-32!239;DOID:2531!2.11e-16!51;DOID:0060083!2.11e-16!51;DOID:0050686!8.70e-16!137;DOID:0050687!2.29e-15!143;DOID:1240!6.98e-13!39;DOID:305!9.98e-12!106;DOID:8692!2.14e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.98e-09;39!DOID:8692;4.42e-09;31!DOID:2531;2.31e-08;51!DOID:0060083;2.31e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.09e-20,235;DOID:14566,1.31e-19,239;DOID:1240,7.70e-12,39;DOID:2531,1.51e-11,51;DOID:0060083,1.51e-11,51;DOID:0050687,7.63e-10,143;DOID:0050686,2.92e-09,137;DOID:8692,4.39e-09,31;DOID:305,7.07e-07,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p7@SMC4 | |||
}} |
Revision as of 22:29, 12 September 2013
Short description: | p7@SMC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SMC4_5end |
Coexpression cluster: | C1923_acute_gall_diffuse_mesenchymal_Preadipocyte_epitheloid_papillary |
Association with transcript: | -16bp_to_ENST00000487747_5end |
EntrezGene: | SMC4 |
HGNC: | 14013 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cancer | 2.09e-20 | 235 |
disease of cellular proliferation | 1.31e-19 | 239 |
leukemia | 7.70e-12 | 39 |
hematologic cancer | 1.51e-11 | 51 |
immune system cancer | 1.51e-11 | 51 |
cell type cancer | 7.63e-10 | 143 |
organ system cancer | 2.92e-09 | 137 |
myeloid leukemia | 4.39e-09 | 31 |
carcinoma | 7.07e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.