FFCP PHASE1:Hg19::chr3:16555127..16555145,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23180|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30278|TSSclassifier=S|UniProt=Q14699|association_with_transcript=67bp_to_ENST00000334133_5end|description=CAGE_peak_4_at_RFTN1_5end|id=chr3:16555127..16555145,-|ontology_enrichment_celltype=CL:0000048!1.86e-19!430;CL:0000723!3.71e-18!436;CL:0000034!3.69e-17!444;CL:0000134!6.09e-15!358;CL:0002320!1.04e-14!365;CL:0002371!2.53e-11!591;CL:0000219!8.26e-11!390;CL:0000144!5.35e-10!625;CL:0000057!6.54e-09!75;CL:0000136!4.38e-08!15;CL:0000055!2.77e-07!180|ontology_enrichment_celltype_v019=CL:0000136;2.02e-08;13|ontology_enrichment_celltype_v019_2=CL:0000048,8.71e-20,427;CL:0000723,1.69e-18,433;CL:0000034,7.05e-18,441;CL:0000134,2.66e-16,354;CL:0002320,6.03e-16,361;CL:0000219,1.14e-12,386;CL:0000057,3.32e-09,76;CL:0000136,1.04e-08,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!1.09e-12!375;UBERON:0003081!6.56e-09!216;UBERON:0004535!9.20e-08!110;UBERON:0001009!1.04e-07!113;UBERON:0002049!3.50e-07!79;UBERON:0007798!3.50e-07!79;UBERON:0000479!7.66e-07!787;UBERON:0000055!9.75e-07!69|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.14e-14,371;UBERON:0003081,1.86e-08,203;UBERON:0001637,5.86e-07,42;UBERON:0003509,5.86e-07,42;UBERON:0004572,5.86e-07,42;UBERON:0000479,7.39e-07,773|phase1_expression=7.81217030863394,8.13581990785736,4.51054093107108,13.009528785907,5.36353313312745,6.10636966870258,2.53299878168311,3.79031924056099,3.65659879479774,2.94880723801811,2.79120467188971,0.873765488520689,2.11013582582763,1.48519623552056,0,2.6893005858071,1.80808358407193,1.46062018077475,1.95173119516203,2.83178433576612,2.04000691244253,2.5076377718247,2.28988789704845,1.50561867580173,1.88313959392204,6.95361992306356,4.92603536699674,5.50975469195755,7.08055698328027,1.53531759238885,1.85779347979291,0,0.90361775633475,0,7.43685125570896,2.55904618477359,2.05520307534393,2.76997704265939,7.42014455639524,3.47217393145363,0.223915474239924,0,0,1.30858414901608,1.51150377475524,1.21292030593908,0.464858073811369,1.6446715520873,1.23882548358041,0.863077176966451,0.768482119587302,1.41889337933151,2.06847408441971,1.93645405075148,4.06279459783025,1.12945403725563,1.63743690034707,2.02251136000576,3.97909060082173,2.56743221660875,1.27867425159808,1.64925650093358,2.59302754908121,2.55734850319616,3.48251086354301,3.40431134814684,4.35975574296902,0.502497330513487,2.08593167368081,0.868755378820466,0.605399502633369,4.78760926783834,2.53169909952708,1.26753171787165,0.850417199860174,1.67726916406701,0.786300418025466,0.600707571366025,0.32145117339416,2.85012743741249,3.38158351238453,1.27864907635244,1.75996244461323,1.63841583378639,0.889509253863555,0.426730222566507,0.400395987036012,4.02326707968138,0.661044872784862,0,9.67662047486062,11.1575065980478,10.7036503875064,2.64342657158052,5.04457706683382,1.05353633910031,1.7703879310245,3.14408610199332,2.87842098599313,0.334372990781356,2.60737813306872,0.473447805734733,0,1.11410456885174,2.06224135232386,1.10766947291811,1.35401931882508,0.384273959177026,0.650296737799391,2.46656856905514,2.48715016007264,0.869409257205157,1.03800594213442,0.802622484269139,2.09071047609954,1.13309342697566,1.14966148080576,2.40539211837841,1.01207876807801,1.59282707162048,1.95325036156926,0.950452044448374,0.752875595388864,0.639933055772092,0,0.236777252044017,0,3.02410114837099,3.20928234940209,3.18613688542158,0,1.34140171940727,2.9408389224012,1.0843174571537,4.51204119572301,2.02785126545153,3.1811437882044,0,0.661743720148475,0.665188192387692,0.527008714158756,1.70272798147026,0,0.741568885568859,0.649094787309367,2.61194605948901,4.12169677608482,2.14641561874808,1.71598473234038,2.60020250930695,1.39133685156694,0,1.38856200643038,3.39184765154406,1.25849830862972,1.6507082516404,2.50793959844173,0.516833518338658,3.20189636418039,1.67360306382335,0.805658634218294,1.52054421143703,0.488124115096339,2.94130464276695,0.81014194788176,0.714397826272638,0.898117490504679,1.46394924628319,0,0.949265659568129,0.732806975721629,0,0,1.3082821564276,0,3.92554586160197,1.85372853138506,2.29469296599051,1.06400514659507,1.68203280042692,6.4049397437823,2.71334303258876,1.55605517699883,2.42479209725439,2.12500474047496,4.54072282934794,2.30470369792,0.468642863667593,0.624320153660641,1.1409436430889,0.747243402759005,0.822041490506354,1.61872944368132,0.702254033511242,2.04154171254893,1.35117749042945,3.09977343527296,2.37600571456411,0.989067717114227,2.73048408581408,2.87447256726495,1.0100166837244,1.50142223846357,1.93944880838928,1.31693286264251,3.37136575378922,1.95309476578576,2.49550802952046,4.66413052791041,1.49490172172997,1.05965950579781,3.60109315301283,1.64884046781502,4.3798891807757,5.21127197728451,3.71307930930786,4.96928726322113,2.77677151668526,1.28869858099219,2.4246908522821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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23180 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |||
|TSSclassifier=S | |||
|UniProt=Q14699 | |||
|association_with_transcript=67bp_to_ENST00000334133_5end | |||
|description=CAGE_peak_4_at_RFTN1_5end | |||
|id=chr3:16555127..16555145,- | |||
|ontology_enrichment_celltype=CL:0000048!1.86e-19!430;CL:0000723!3.71e-18!436;CL:0000034!3.69e-17!444;CL:0000134!6.09e-15!358;CL:0002320!1.04e-14!365;CL:0002371!2.53e-11!591;CL:0000219!8.26e-11!390;CL:0000144!5.35e-10!625;CL:0000057!6.54e-09!75;CL:0000136!4.38e-08!15;CL:0000055!2.77e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.02e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,8.71e-20,427;CL:0000723,1.69e-18,433;CL:0000034,7.05e-18,441;CL:0000134,2.66e-16,354;CL:0002320,6.03e-16,361;CL:0000219,1.14e-12,386;CL:0000057,3.32e-09,76;CL:0000136,1.04e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.09e-12!375;UBERON:0003081!6.56e-09!216;UBERON:0004535!9.20e-08!110;UBERON:0001009!1.04e-07!113;UBERON:0002049!3.50e-07!79;UBERON:0007798!3.50e-07!79;UBERON:0000479!7.66e-07!787;UBERON:0000055!9.75e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.14e-14,371;UBERON:0003081,1.86e-08,203;UBERON:0001637,5.86e-07,42;UBERON:0003509,5.86e-07,42;UBERON:0004572,5.86e-07,42;UBERON:0000479,7.39e-07,773 | |||
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| |||
|short_description=p4@RFTN1 | |||
}} |
Revision as of 22:34, 12 September 2013
Short description: | p4@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RFTN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 67bp_to_ENST00000334133_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | Q14699 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 8.71e-20 | 427 |
somatic stem cell | 1.69e-18 | 433 |
stem cell | 7.05e-18 | 441 |
mesenchymal cell | 2.66e-16 | 354 |
connective tissue cell | 6.03e-16 | 361 |
motile cell | 1.14e-12 | 386 |
fibroblast | 3.32e-09 | 76 |
fat cell | 1.04e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.14e-14 | 371 |
lateral plate mesoderm | 1.86e-08 | 203 |
artery | 5.86e-07 | 42 |
arterial blood vessel | 5.86e-07 | 42 |
arterial system | 5.86e-07 | 42 |
tissue | 7.39e-07 | 773 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.