FFCP PHASE1:Mm9::chr12:58647768..58647780,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2786|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:58647768..58647780,-|id=chr12:58647768..58647780,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002076,1.70e-07,15;CL:0002563,2.23e-07,9;CL:0002251,2.23e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!2.23e-17!128;UBERON:0001555!2.23e-17!128;UBERON:0007026!2.23e-17!128;UBERON:0004119!2.45e-17!130;UBERON:0000925!2.45e-17!130;UBERON:0006595!2.45e-17!130;UBERON:0004921!1.45e-16!126;UBERON:0004185!1.45e-16!126;UBERON:0005409!1.37e-14!59;UBERON:0005178!2.00e-11!17;UBERON:0005181!2.00e-11!17;UBERON:0002224!2.00e-11!17;UBERON:0000915!2.00e-11!17;UBERON:0008947!2.00e-11!17;UBERON:0003258!2.00e-11!17;UBERON:0005153!4.34e-11!17;UBERON:0000160!9.48e-11!43;UBERON:0002048!2.26e-09!14;UBERON:0000117!2.26e-09!14;UBERON:0000171!2.26e-09!14;UBERON:0000170!2.26e-09!14;UBERON:0005597!2.26e-09!14;UBERON:0000118!2.26e-09!14;UBERON:0000344!1.50e-08!15;UBERON:0001242!6.93e-08!13;UBERON:0000060!6.93e-08!13;UBERON:0001262!6.93e-08!13;UBERON:0004786!6.93e-08!13|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.77e-29,47;UBERON:0004921,1.98e-20,114;UBERON:0001007,6.30e-20,116;UBERON:0001555,6.30e-20,116;UBERON:0007026,6.30e-20,116;UBERON:0004119,1.92e-19,118;UBERON:0000925,1.92e-19,118;UBERON:0006595,1.92e-19,118;UBERON:0000160,3.36e-19,31;UBERON:0000945,1.58e-10,16;UBERON:0010039,1.58e-10,16;UBERON:0000161,2.06e-10,5;UBERON:0011216,3.52e-09,194;UBERON:0001242,1.13e-08,13;UBERON:0001262,1.13e-08,13;UBERON:0004786,1.13e-08,13;UBERON:0003350,2.23e-07,9;UBERON:0004808,2.23e-07,9;UBERON:0001277,2.23e-07,9;UBERON:0000344,2.43e-07,15;UBERON:0000162,2.46e-07,3;UBERON:0001353,2.46e-07,3;UBERON:0000163,2.46e-07,3;UBERON:0006866,2.46e-07,3;UBERON:0001046,2.46e-07,3;UBERON:0000164,2.46e-07,3;UBERON:0000931,2.46e-07,3|phase1_expression=0,0.697950815278722,0,0.30246421130683,2.00358291978539,2.68606835059024,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.47997726838022,0.45881856213434,0.57423196411502,0.86152399231815,1.07735616342945,0.570070258369122,1.76421090831952,1.55211357458713,0,0,0,1.1554064790051,1.16364251750945,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52091337055676,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0.539703191637817,0,0,1.12355536105401,0,0,0,0,0,0,0,2.81438353314578,0.506719730950197,2.52762222507392,0.34255163915718,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,7.45567044872489,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.793351699990633,1.49301775374664,2.32236671860439,1.28867461322093,0.605050573870028,2.00140239460383,0.570676878337677,1.42358718463353,0.658795818896044,0.502670417600539,1.39269530428806,0.19496408711912,1.79763881730844,1.51296634912286,1.39398891278057,0.379335801906163,0.228497025219458,0,0.407302655690628,0.387904974335251,0.280543279561274,0.316182685621286,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0.482443521363367,0.923765950833023,0.568474235311454,0.651859905768103,0.678980343100753,1.17345124144251,1.17254380209271,1.42826184531608,1.95133647857799,0.945810864637146,0.664394068946325,0.797273843287435,0.655453258862952,0.690739927463582,0.867894351489069,0,0,0.983528546038072,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,29.5508053393649,0,0,0.0603129249281559,0.119372344003136,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,14.3200592702267,0.158167996790568,3.25311147402958,3.99619761040665,5.43629569637619,6.11415178489297,4.85511646985355,4.87655388779482,8.63794608547298,3.49960427887841,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.129920822977795,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,1.36038230169127,0,0,0,9.46629010757733,0,0,1.07184189539533,12.0377304968487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0.44449345560323,0.618105171716683,0,0,0.25347929989024,0.754505365544305,0.655490552289177,0.128050304809739,0.34461281373368,0.476293691283074,0.115884325944855,0.192909220463705,0.824171801606613,0.441596760403192,0.342869252385415,0.532427418478012,0.476872379894642,0.145346416632329,0.376437521661322,0.423073039458382,0.73171189149109,0.263069711437843,0.135804113845862,1.68342681497322,0,0.492522411877817,0,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.191288332068843,0.220591419119515,0|short_description=p@chr12:58647768..58647780,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2786 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:58647768..58647780,- | |||
|id=chr12:58647768..58647780,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.70e-07,15;CL:0002563,2.23e-07,9;CL:0002251,2.23e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!2.23e-17!128;UBERON:0001555!2.23e-17!128;UBERON:0007026!2.23e-17!128;UBERON:0004119!2.45e-17!130;UBERON:0000925!2.45e-17!130;UBERON:0006595!2.45e-17!130;UBERON:0004921!1.45e-16!126;UBERON:0004185!1.45e-16!126;UBERON:0005409!1.37e-14!59;UBERON:0005178!2.00e-11!17;UBERON:0005181!2.00e-11!17;UBERON:0002224!2.00e-11!17;UBERON:0000915!2.00e-11!17;UBERON:0008947!2.00e-11!17;UBERON:0003258!2.00e-11!17;UBERON:0005153!4.34e-11!17;UBERON:0000160!9.48e-11!43;UBERON:0002048!2.26e-09!14;UBERON:0000117!2.26e-09!14;UBERON:0000171!2.26e-09!14;UBERON:0000170!2.26e-09!14;UBERON:0005597!2.26e-09!14;UBERON:0000118!2.26e-09!14;UBERON:0000344!1.50e-08!15;UBERON:0001242!6.93e-08!13;UBERON:0000060!6.93e-08!13;UBERON:0001262!6.93e-08!13;UBERON:0004786!6.93e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.77e-29,47;UBERON:0004921,1.98e-20,114;UBERON:0001007,6.30e-20,116;UBERON:0001555,6.30e-20,116;UBERON:0007026,6.30e-20,116;UBERON:0004119,1.92e-19,118;UBERON:0000925,1.92e-19,118;UBERON:0006595,1.92e-19,118;UBERON:0000160,3.36e-19,31;UBERON:0000945,1.58e-10,16;UBERON:0010039,1.58e-10,16;UBERON:0000161,2.06e-10,5;UBERON:0011216,3.52e-09,194;UBERON:0001242,1.13e-08,13;UBERON:0001262,1.13e-08,13;UBERON:0004786,1.13e-08,13;UBERON:0003350,2.23e-07,9;UBERON:0004808,2.23e-07,9;UBERON:0001277,2.23e-07,9;UBERON:0000344,2.43e-07,15;UBERON:0000162,2.46e-07,3;UBERON:0001353,2.46e-07,3;UBERON:0000163,2.46e-07,3;UBERON:0006866,2.46e-07,3;UBERON:0001046,2.46e-07,3;UBERON:0000164,2.46e-07,3;UBERON:0000931,2.46e-07,3 | |||
|phase1_expression=0,0.697950815278722,0,0.30246421130683,2.00358291978539,2.68606835059024,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.47997726838022,0.45881856213434,0.57423196411502,0.86152399231815,1.07735616342945,0.570070258369122,1.76421090831952,1.55211357458713,0,0,0,1.1554064790051,1.16364251750945,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52091337055676,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0.539703191637817,0,0,1.12355536105401,0,0,0,0,0,0,0,2.81438353314578,0.506719730950197,2.52762222507392,0.34255163915718,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,7.45567044872489,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0.793351699990633,1.49301775374664,2.32236671860439,1.28867461322093,0.605050573870028,2.00140239460383,0.570676878337677,1.42358718463353,0.658795818896044,0.502670417600539,1.39269530428806,0.19496408711912,1.79763881730844,1.51296634912286,1.39398891278057,0.379335801906163,0.228497025219458,0,0.407302655690628,0.387904974335251,0.280543279561274,0.316182685621286,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0.482443521363367,0.923765950833023,0.568474235311454,0.651859905768103,0.678980343100753,1.17345124144251,1.17254380209271,1.42826184531608,1.95133647857799,0.945810864637146,0.664394068946325,0.797273843287435,0.655453258862952,0.690739927463582,0.867894351489069,0,0,0.983528546038072,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,29.5508053393649,0,0,0.0603129249281559,0.119372344003136,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,14.3200592702267,0.158167996790568,3.25311147402958,3.99619761040665,5.43629569637619,6.11415178489297,4.85511646985355,4.87655388779482,8.63794608547298,3.49960427887841,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.308132871494482,0.129920822977795,0,0,0,0,0,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,1.36038230169127,0,0,0,9.46629010757733,0,0,1.07184189539533,12.0377304968487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0.44449345560323,0.618105171716683,0,0,0.25347929989024,0.754505365544305,0.655490552289177,0.128050304809739,0.34461281373368,0.476293691283074,0.115884325944855,0.192909220463705,0.824171801606613,0.441596760403192,0.342869252385415,0.532427418478012,0.476872379894642,0.145346416632329,0.376437521661322,0.423073039458382,0.73171189149109,0.263069711437843,0.135804113845862,1.68342681497322,0,0.492522411877817,0,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.191288332068843,0.220591419119515,0 | |||
|short_description=p@chr12:58647768..58647780,- | |||
}} |
Revision as of 23:00, 12 September 2013
Short description: | p@chr12:58647768..58647780, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:58647768..58647780, - |
Coexpression cluster: | MCL_coexpression_mm9:2786 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.70e-07 | 15 |
intestinal epithelial cell | 2.23e-07 | 9 |
epithelial cell of alimentary canal | 2.23e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.77e-29 | 47 |
subdivision of digestive tract | 1.98e-20 | 114 |
digestive system | 6.30e-20 | 116 |
digestive tract | 6.30e-20 | 116 |
primitive gut | 6.30e-20 | 116 |
endoderm-derived structure | 1.92e-19 | 118 |
endoderm | 1.92e-19 | 118 |
presumptive endoderm | 1.92e-19 | 118 |
intestine | 3.36e-19 | 31 |
stomach | 1.58e-10 | 16 |
food storage organ | 1.58e-10 | 16 |
orifice | 2.06e-10 | 5 |
organ system subdivision | 3.52e-09 | 194 |
intestinal mucosa | 1.13e-08 | 13 |
wall of intestine | 1.13e-08 | 13 |
gastrointestinal system mucosa | 1.13e-08 | 13 |
epithelium of mucosa | 2.23e-07 | 9 |
gastrointestinal system epithelium | 2.23e-07 | 9 |
intestinal epithelium | 2.23e-07 | 9 |
mucosa | 2.43e-07 | 15 |
cloaca | 2.46e-07 | 3 |
anal region | 2.46e-07 | 3 |
embryonic cloaca | 2.46e-07 | 3 |
terminal part of digestive tract | 2.46e-07 | 3 |
hindgut | 2.46e-07 | 3 |
primitive urogenital sinus | 2.46e-07 | 3 |
proctodeum | 2.46e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.