FFCP PHASE1:Hg19::chr3:192958956..192958973,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57110|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14922|TSSclassifier=S|UniProt=D2KX19,Q6X7C0,Q86WS9,Q9HDD0|association_with_transcript=38bp_to_NM_020386,uc003fta.2_5end|coexpression_cluster_id=C1|description=CAGE_peak_6_at_HRASLS_5end|id=chr3:192958956..192958973,+|ontology_enrichment_celltype=CL:0000095!2.77e-08!17;CL:0000123!2.77e-08!17;CL:0002319!4.23e-08!25|ontology_enrichment_celltype_v019=CL:0000167;1.92e-15;1!CL:0000164;1.92e-15;1!CL:0000502;1.92e-15;1!CL:0000172;1.92e-15;1!CL:0000173;1.92e-15;1!CL:0000123;2.23e-08;2!CL:0000242;2.23e-08;2|ontology_enrichment_celltype_v019_2=CL:0000167,2.75e-15,1;CL:0000164,2.75e-15,1;CL:0000502,2.75e-15,1;CL:0000172,2.75e-15,1;CL:0000173,2.75e-15,1;CL:0002351,2.75e-15,1;CL:0000242,2.31e-08,2|ontology_enrichment_development_v019=CL:0002351;1.92e-15;1!UBERON:0005425;1.92e-15;1!UBERON:0009117;9.22e-07;10!UBERON:0005564;9.22e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:178;1.92e-15;1!DOID:326;1.92e-15;1!DOID:3978;1.92e-15;1!DOID:3394;1.92e-15;1!DOID:5844;1.92e-15;1!DOID:4430;1.92e-15;1!DOID:169;2.29e-10;6!DOID:114;2.23e-08;2!DOID:1909;2.23e-08;2|ontology_enrichment_disease_v019_2=DOID:178,2.38e-15,1;DOID:326,2.38e-15,1;DOID:3978,2.38e-15,1;DOID:3394,2.38e-15,1;DOID:5844,2.38e-15,1;DOID:4430,2.75e-15,1;DOID:169,3.04e-10,6;DOID:1909,2.00e-08,2;DOID:114,2.48e-08,2|ontology_enrichment_uberon=UBERON:0000073!1.02e-16!94;UBERON:0001016!1.02e-16!94;UBERON:0005743!4.47e-16!86;UBERON:0000955!1.34e-15!69;UBERON:0006238!1.34e-15!69;UBERON:0001017!2.06e-15!82;UBERON:0001049!7.32e-14!57;UBERON:0005068!7.32e-14!57;UBERON:0006241!7.32e-14!57;UBERON:0007135!7.32e-14!57;UBERON:0003075!1.70e-13!86;UBERON:0007284!1.70e-13!86;UBERON:0002616!4.18e-13!59;UBERON:0004121!1.50e-12!169;UBERON:0002346!2.03e-12!90;UBERON:0000924!6.58e-12!173;UBERON:0006601!6.58e-12!173;UBERON:0000153!7.37e-11!129;UBERON:0007811!7.37e-11!129;UBERON:0003056!1.17e-10!61;UBERON:0000033!1.56e-10!123;UBERON:0002780!1.92e-10!41;UBERON:0001890!1.92e-10!41;UBERON:0006240!1.92e-10!41;UBERON:0003080!4.66e-10!42;UBERON:0001893!1.72e-09!34;UBERON:0001869!2.58e-09!32;UBERON:0002791!1.08e-08!33;UBERON:0002020!1.47e-08!34;UBERON:0003528!1.47e-08!34;UBERON:0004732!3.94e-08!13;UBERON:0007023!5.29e-08!115;UBERON:0000956!2.40e-07!25;UBERON:0000203!2.40e-07!25;UBERON:0001950!2.55e-07!20;UBERON:0004733!6.96e-07!12;UBERON:0002028!6.96e-07!12;UBERON:0007277!6.96e-07!12|ontology_enrichment_uberon_v019=UBERON:0001905;8.03e-30;2!UBERON:0002757;8.03e-30;2!UBERON:0010134;8.03e-30;2!UBERON:0005408;8.03e-30;2!UBERON:0001899;8.03e-30;2!UBERON:0000941;1.92e-15;1!UBERON:0001785;1.92e-15;1!UBERON:0002464;1.92e-15;1!UBERON:0004904;1.92e-15;1!UBERON:0001021;1.92e-15;1!UBERON:0003296;1.92e-15;4!UBERON:0010133;1.92e-15;4!UBERON:0002784;1.92e-15;4!UBERON:0001894;3.16e-09;7!UBERON:0003714;2.23e-08;2!UBERON:0005162;2.23e-08;2!UBERON:0000122;2.23e-08;2!UBERON:0000473;3.04e-08;8!UBERON:0000010;3.34e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0001905,8.05e-30,2;UBERON:0002757,8.05e-30,2;UBERON:0010134,8.05e-30,2;UBERON:0005408,8.05e-30,2;UBERON:0001899,8.05e-30,2;UBERON:0000941,1.34e-15,1;UBERON:0001785,1.34e-15,1;UBERON:0002464,1.34e-15,1;UBERON:0004904,1.34e-15,1;UBERON:0001021,1.34e-15,1;UBERON:0003902,1.34e-15,1;UBERON:0005425,1.34e-15,1;UBERON:0003296,1.92e-15,4;UBERON:0010133,1.92e-15,4;UBERON:0002784,1.92e-15,4;UBERON:0001894,3.17e-09,7;UBERON:0006222,3.17e-09,7;UBERON:0003714,1.86e-08,2;UBERON:0005162,1.86e-08,2;UBERON:0000122,1.86e-08,2;UBERON:0000473,3.04e-08,8;UBERON:0000010,3.45e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0.204000691244253,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.702678285545008,1.96468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0,0,0.831076008928724,0.223874754722178,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.1137934482855,0,0.236387681767936,0.344743373241465,0.874813840149763,0,0,0.120596438625408,0,0,0.295547618953547,0.438770794307945,0,0,0,0.113942055847001,0.69169171316418,0,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0.30607276163049,0,0,0.207376382794494,0,0,0.627865836814451,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0.0969890164884194,0,0,0.274083849293502,0,0.316553979779393,0,0,0,0.19980960958213,0.144090417154106,0,0.171594997861965,0.14405479798815,0,0,0.407712618220842,0.313808538937,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,1.39775300349294,0.429226048136571,0.669514372325618,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0,0.171086837884329,0,0,0,0,0,0,0,0,0.544017803369474,0.2506898940227,0,0,0.314108192500469,0,0.244052529803926,0.250381861413,0.573409195690071,0,0.18628920882415,0.276697269872462,0,0.151649117541648,1.42732666772484,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0.694567422971502,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0.213383459388282,0,0,0,0,0,1.15104934173287,0,0.314531883711793,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0,1.00828678488687,0.207471757392654,0,1.42769420259154,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.270150338473579,0,0,0.317079050969534,0.546974809018219,0,0,0,0,2.67850917939143,2.69026977775059,0,0,0,0,0,0.475788130837822,0.263091094251396,1.65471377237555,0,0,0.471346769748006,0,0,0,0,0.0714765441766563,0.158013611732727,0,0.521574816907738,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.307988420568741,0,0,0.467878926924211,0.397901550322736,0.594600453887843,0.11294608203896,0.659643100472575,0,0,0,0.470317296361523,0,1.17838273550813,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0.407948941145488,0,0,0,0,0,0,0.655593431782173,0,0.203977659483963,0,0,0.250707539292375,4.01627100556669,9.11078042531007,0,0.103432995861895,0.213233981900981,0.23806443146374,0,0,0.224263725161227,0.0636471582781649,0,0.217716747896961,0.342233301085281,0,0,0,0,0.213454691755431,0,0,0,0.122241444182866,0,0,0,0|short_description=p6@HRASLS}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=57110 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14922 | |||
|TSSclassifier=S | |||
|UniProt=D2KX19,Q6X7C0,Q86WS9,Q9HDD0 | |||
|association_with_transcript=38bp_to_NM_020386,uc003fta.2_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_6_at_HRASLS_5end | |||
|id=chr3:192958956..192958973,+ | |||
|ontology_enrichment_celltype=CL:0000095!2.77e-08!17;CL:0000123!2.77e-08!17;CL:0002319!4.23e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000167;1.92e-15;1!CL:0000164;1.92e-15;1!CL:0000502;1.92e-15;1!CL:0000172;1.92e-15;1!CL:0000173;1.92e-15;1!CL:0000123;2.23e-08;2!CL:0000242;2.23e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.75e-15,1;CL:0000164,2.75e-15,1;CL:0000502,2.75e-15,1;CL:0000172,2.75e-15,1;CL:0000173,2.75e-15,1;CL:0002351,2.75e-15,1;CL:0000242,2.31e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002351;1.92e-15;1!UBERON:0005425;1.92e-15;1!UBERON:0009117;9.22e-07;10!UBERON:0005564;9.22e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:178;1.92e-15;1!DOID:326;1.92e-15;1!DOID:3978;1.92e-15;1!DOID:3394;1.92e-15;1!DOID:5844;1.92e-15;1!DOID:4430;1.92e-15;1!DOID:169;2.29e-10;6!DOID:114;2.23e-08;2!DOID:1909;2.23e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:178,2.38e-15,1;DOID:326,2.38e-15,1;DOID:3978,2.38e-15,1;DOID:3394,2.38e-15,1;DOID:5844,2.38e-15,1;DOID:4430,2.75e-15,1;DOID:169,3.04e-10,6;DOID:1909,2.00e-08,2;DOID:114,2.48e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.02e-16!94;UBERON:0001016!1.02e-16!94;UBERON:0005743!4.47e-16!86;UBERON:0000955!1.34e-15!69;UBERON:0006238!1.34e-15!69;UBERON:0001017!2.06e-15!82;UBERON:0001049!7.32e-14!57;UBERON:0005068!7.32e-14!57;UBERON:0006241!7.32e-14!57;UBERON:0007135!7.32e-14!57;UBERON:0003075!1.70e-13!86;UBERON:0007284!1.70e-13!86;UBERON:0002616!4.18e-13!59;UBERON:0004121!1.50e-12!169;UBERON:0002346!2.03e-12!90;UBERON:0000924!6.58e-12!173;UBERON:0006601!6.58e-12!173;UBERON:0000153!7.37e-11!129;UBERON:0007811!7.37e-11!129;UBERON:0003056!1.17e-10!61;UBERON:0000033!1.56e-10!123;UBERON:0002780!1.92e-10!41;UBERON:0001890!1.92e-10!41;UBERON:0006240!1.92e-10!41;UBERON:0003080!4.66e-10!42;UBERON:0001893!1.72e-09!34;UBERON:0001869!2.58e-09!32;UBERON:0002791!1.08e-08!33;UBERON:0002020!1.47e-08!34;UBERON:0003528!1.47e-08!34;UBERON:0004732!3.94e-08!13;UBERON:0007023!5.29e-08!115;UBERON:0000956!2.40e-07!25;UBERON:0000203!2.40e-07!25;UBERON:0001950!2.55e-07!20;UBERON:0004733!6.96e-07!12;UBERON:0002028!6.96e-07!12;UBERON:0007277!6.96e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;8.03e-30;2!UBERON:0002757;8.03e-30;2!UBERON:0010134;8.03e-30;2!UBERON:0005408;8.03e-30;2!UBERON:0001899;8.03e-30;2!UBERON:0000941;1.92e-15;1!UBERON:0001785;1.92e-15;1!UBERON:0002464;1.92e-15;1!UBERON:0004904;1.92e-15;1!UBERON:0001021;1.92e-15;1!UBERON:0003296;1.92e-15;4!UBERON:0010133;1.92e-15;4!UBERON:0002784;1.92e-15;4!UBERON:0001894;3.16e-09;7!UBERON:0003714;2.23e-08;2!UBERON:0005162;2.23e-08;2!UBERON:0000122;2.23e-08;2!UBERON:0000473;3.04e-08;8!UBERON:0000010;3.34e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,8.05e-30,2;UBERON:0002757,8.05e-30,2;UBERON:0010134,8.05e-30,2;UBERON:0005408,8.05e-30,2;UBERON:0001899,8.05e-30,2;UBERON:0000941,1.34e-15,1;UBERON:0001785,1.34e-15,1;UBERON:0002464,1.34e-15,1;UBERON:0004904,1.34e-15,1;UBERON:0001021,1.34e-15,1;UBERON:0003902,1.34e-15,1;UBERON:0005425,1.34e-15,1;UBERON:0003296,1.92e-15,4;UBERON:0010133,1.92e-15,4;UBERON:0002784,1.92e-15,4;UBERON:0001894,3.17e-09,7;UBERON:0006222,3.17e-09,7;UBERON:0003714,1.86e-08,2;UBERON:0005162,1.86e-08,2;UBERON:0000122,1.86e-08,2;UBERON:0000473,3.04e-08,8;UBERON:0000010,3.45e-07,8 | |||
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|short_description=p6@HRASLS | |||
}} |
Revision as of 23:23, 12 September 2013
Short description: | p6@HRASLS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_HRASLS_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 38bp_to_NM_020386, uc003fta.2_5end |
EntrezGene: | HRASLS |
HGNC: | 14922 |
UniProt: | D2KX19Q6X7C0Q86WS9Q9HDD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.75e-15 | 1 |
enteroendocrine cell | 2.75e-15 | 1 |
type D enteroendocrine cell | 2.75e-15 | 1 |
somatostatin secreting cell | 2.75e-15 | 1 |
pancreatic D cell | 2.75e-15 | 1 |
progenitor cell of endocrine pancreas | 2.75e-15 | 1 |
Merkel cell | 2.31e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
pineal body | 8.05e-30 | 2 |
regional part of epithalamus | 8.05e-30 | 2 |
secretory circumventricular organ | 8.05e-30 | 2 |
circumventricular organ | 8.05e-30 | 2 |
epithalamus | 8.05e-30 | 2 |
cranial nerve II | 1.34e-15 | 1 |
cranial nerve | 1.34e-15 | 1 |
nerve trunk | 1.34e-15 | 1 |
nerve connecting eye with brain | 1.34e-15 | 1 |
nerve | 1.34e-15 | 1 |
retinal neural layer | 1.34e-15 | 1 |
presumptive neural retina | 1.34e-15 | 1 |
gland of diencephalon | 1.92e-15 | 4 |
neuroendocrine gland | 1.92e-15 | 4 |
regional part of diencephalon | 1.92e-15 | 4 |
diencephalon | 3.17e-09 | 7 |
future diencephalon | 3.17e-09 | 7 |
neural tissue | 1.86e-08 | 2 |
multi cell component structure | 1.86e-08 | 2 |
neuron projection bundle | 1.86e-08 | 2 |
testis | 3.04e-08 | 8 |
peripheral nervous system | 3.45e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 2.38e-15 | 1 |
ischemia | 2.38e-15 | 1 |
extrinsic cardiomyopathy | 2.38e-15 | 1 |
myocardial ischemia | 2.38e-15 | 1 |
myocardial infarction | 2.38e-15 | 1 |
somatostatinoma | 2.75e-15 | 1 |
neuroendocrine tumor | 3.04e-10 | 6 |
melanoma | 2.00e-08 | 2 |
heart disease | 2.48e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.