FFCP PHASE1:Hg19::chr3:58196655..58196668,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1776|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2959|TSSclassifier=S|UniProt=|association_with_transcript=-8bp_to_ENST00000463694_5end|coexpression_cluster_id=C1157|description=CAGE_peak_3_at_DNASE1L3_5end|id=chr3:58196655..58196668,-|ontology_enrichment_celltype=CL:0000136!1.74e-08!15;CL:0000990!2.65e-07!8|ontology_enrichment_celltype_v019=CL:0000136;8.64e-12;13!CL:0002615;6.59e-11;3!CL:0000840;4.14e-10;5!CL:0002617;6.31e-08;2!CL:0002583;2.44e-07;2|ontology_enrichment_celltype_v019_2=CL:0002615,7.07e-11,3;CL:0000840,3.96e-10,5;CL:0001029,3.96e-10,5;CL:0000136,4.40e-10,15;CL:0002617,4.31e-08,2;CL:0002583,3.63e-07,2;CL:0000990,9.82e-07,8|ontology_enrichment_development_v019=UBERON:0004872;4.42e-08;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.56e-34!115;UBERON:0004177!8.08e-07!7;UBERON:0002106!8.36e-07!3;UBERON:0004854!8.36e-07!3;UBERON:0009034!8.36e-07!3;UBERON:0002095!8.36e-07!3;UBERON:0004782!8.36e-07!3;UBERON:0003281!8.36e-07!3;UBERON:0009664!8.36e-07!3;UBERON:0002296!8.36e-07!3;UBERON:0005602!8.36e-07!3;UBERON:0001179!8.36e-07!3;UBERON:0006293!8.36e-07!3|ontology_enrichment_uberon_v019=UBERON:0004177;6.26e-17;5!UBERON:0005057;6.26e-17;5!UBERON:0002106;2.65e-11;3!UBERON:0002360;9.06e-08;2!UBERON:0000094;9.06e-08;2!UBERON:0010743;9.06e-08;2!UBERON:0000007;1.32e-07;2!UBERON:0002370;2.44e-07;2!UBERON:0005058;2.44e-07;2!UBERON:0009113;2.44e-07;2!UBERON:0002108;7.63e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.65e-13,114;UBERON:0004177,5.96e-12,7;UBERON:0005057,5.96e-12,7;UBERON:0002106,2.61e-11,3;UBERON:0004854,2.61e-11,3;UBERON:0009034,2.61e-11,3;UBERON:0002095,2.61e-11,3;UBERON:0004782,2.61e-11,3;UBERON:0003281,2.61e-11,3;UBERON:0009664,2.61e-11,3;UBERON:0002296,2.61e-11,3;UBERON:0005602,2.61e-11,3;UBERON:0001179,2.61e-11,3;UBERON:0006293,2.61e-11,3;UBERON:0004457,7.00e-10,12;UBERON:0000042,7.00e-10,12;UBERON:0009569,1.66e-08,112;UBERON:0002417,2.18e-08,60;UBERON:0000916,2.18e-08,60;UBERON:0000007,9.23e-08,2;UBERON:0002360,1.13e-07,2;UBERON:0000094,1.13e-07,2;UBERON:0010743,1.13e-07,2;UBERON:0005409,3.16e-07,25;UBERON:0003887,4.99e-07,12;UBERON:0002108,9.24e-07,4|phase1_expression=10.9007027562334,1.92690471501885,2.39622486963151,5.00366491765652,1.34088328328186,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,6.81549526674835,6.79105975467142,9.30705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04108842287405,0,0,0,0.446498641420399,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.5786545549578,0,0,0,0,0.982827216677626,25.4039659873004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.306923946576125,0,0,0,0,0,1.23367755042124,1.06537035187876,0.410635780069046,0.519254429183621,3.7187321107187,0,0,0,0,0,0,0,0,0,0,0,0,2.89159298970077,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,17.0017669218742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,15.2512957258382,0,0,0,0,0,1.52927441428475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,1.65770349318689,0,0,0,0,0,0,0,0.986434056369336,0,0,0,0.371072392647405,0,0,0,2.89999830173917,0,0,0,0,1.16641845353302,0,0,0,0,0,0,1.09692698576986,0,0,1.38510465306835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,2.4441205797345,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0,4.80218005176509,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.84279131327997,0,2.25980740780532,0,0,0.0633107959558787,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.458320848023367,1.43574604915363,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22392955361152,0,0,0,7.01370794962864,3.56691199317987,0,0,0,0,0,0,0,0,0,0,0,0,0,24.6207752579179,17.2258955585888,0,0,0,0,2.88326013932776,0.157204305099666,1.65695622138878,2.97699613087171,0,0,0,1.08803560673895,1.2534494701135,0.612691153526923,0,0,0,0,0,0.573409195690071,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.817826971279221,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1776 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-8bp_to_ENST00000463694_5end | |||
|coexpression_cluster_id=C1157 | |||
|description=CAGE_peak_3_at_DNASE1L3_5end | |||
|id=chr3:58196655..58196668,- | |||
|ontology_enrichment_celltype=CL:0000136!1.74e-08!15;CL:0000990!2.65e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000136;8.64e-12;13!CL:0002615;6.59e-11;3!CL:0000840;4.14e-10;5!CL:0002617;6.31e-08;2!CL:0002583;2.44e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,7.07e-11,3;CL:0000840,3.96e-10,5;CL:0001029,3.96e-10,5;CL:0000136,4.40e-10,15;CL:0002617,4.31e-08,2;CL:0002583,3.63e-07,2;CL:0000990,9.82e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.42e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.56e-34!115;UBERON:0004177!8.08e-07!7;UBERON:0002106!8.36e-07!3;UBERON:0004854!8.36e-07!3;UBERON:0009034!8.36e-07!3;UBERON:0002095!8.36e-07!3;UBERON:0004782!8.36e-07!3;UBERON:0003281!8.36e-07!3;UBERON:0009664!8.36e-07!3;UBERON:0002296!8.36e-07!3;UBERON:0005602!8.36e-07!3;UBERON:0001179!8.36e-07!3;UBERON:0006293!8.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;6.26e-17;5!UBERON:0005057;6.26e-17;5!UBERON:0002106;2.65e-11;3!UBERON:0002360;9.06e-08;2!UBERON:0000094;9.06e-08;2!UBERON:0010743;9.06e-08;2!UBERON:0000007;1.32e-07;2!UBERON:0002370;2.44e-07;2!UBERON:0005058;2.44e-07;2!UBERON:0009113;2.44e-07;2!UBERON:0002108;7.63e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.65e-13,114;UBERON:0004177,5.96e-12,7;UBERON:0005057,5.96e-12,7;UBERON:0002106,2.61e-11,3;UBERON:0004854,2.61e-11,3;UBERON:0009034,2.61e-11,3;UBERON:0002095,2.61e-11,3;UBERON:0004782,2.61e-11,3;UBERON:0003281,2.61e-11,3;UBERON:0009664,2.61e-11,3;UBERON:0002296,2.61e-11,3;UBERON:0005602,2.61e-11,3;UBERON:0001179,2.61e-11,3;UBERON:0006293,2.61e-11,3;UBERON:0004457,7.00e-10,12;UBERON:0000042,7.00e-10,12;UBERON:0009569,1.66e-08,112;UBERON:0002417,2.18e-08,60;UBERON:0000916,2.18e-08,60;UBERON:0000007,9.23e-08,2;UBERON:0002360,1.13e-07,2;UBERON:0000094,1.13e-07,2;UBERON:0010743,1.13e-07,2;UBERON:0005409,3.16e-07,25;UBERON:0003887,4.99e-07,12;UBERON:0002108,9.24e-07,4 | |||
|phase1_expression=10.9007027562334,1.92690471501885,2.39622486963151,5.00366491765652,1.34088328328186,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,6.81549526674835,6.79105975467142,9.30705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04108842287405,0,0,0,0.446498641420399,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,88.5786545549578,0,0,0,0,0.982827216677626,25.4039659873004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.306923946576125,0,0,0,0,0,1.23367755042124,1.06537035187876,0.410635780069046,0.519254429183621,3.7187321107187,0,0,0,0,0,0,0,0,0,0,0,0,2.89159298970077,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,17.0017669218742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0,0,0,15.2512957258382,0,0,0,0,0,1.52927441428475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,1.65770349318689,0,0,0,0,0,0,0,0.986434056369336,0,0,0,0.371072392647405,0,0,0,2.89999830173917,0,0,0,0,1.16641845353302,0,0,0,0,0,0,1.09692698576986,0,0,1.38510465306835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,2.4441205797345,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0,4.80218005176509,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.84279131327997,0,2.25980740780532,0,0,0.0633107959558787,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.458320848023367,1.43574604915363,0,0,0.446342914883745,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22392955361152,0,0,0,7.01370794962864,3.56691199317987,0,0,0,0,0,0,0,0,0,0,0,0,0,24.6207752579179,17.2258955585888,0,0,0,0,2.88326013932776,0.157204305099666,1.65695622138878,2.97699613087171,0,0,0,1.08803560673895,1.2534494701135,0.612691153526923,0,0,0,0,0,0.573409195690071,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,80.8061182968694,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0,0.161475645631851,0,0,0,0,0,0,0,0,0.977734268540344,0,0,0,0,0,0,0,0,0,0,0.548257766857182,1.98484471355718,0,0,0,0,1.82089681270989,2.73194629621557,0.887023701626388,0,0,0,0.0657727735628491,0,0,0.706437835654626,0,0,0.913158720509496,0,0,6.50436552007573,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,2.31522474323834,4.5897507705831,0,0.245148321753905,0,1.37415926980462,0,0,0,5.82700291475092,2.64277340691666,3.0981758336728,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0.535928260312357,0,0,1.0661699095049,0.476128862927481,1.0980114672121,1.30356900021302,0,0.891060215894309,0.606351566874658,6.09606894111492,0,2.49202596153974,1.00411087549747,0,0,0,0,0,0,0.488965776731466,0,0.665756774185513,0.402547587182052,0 | |||
|short_description=p3@DNASE1L3 | |||
}} |
Revision as of 01:00, 13 September 2013
Short description: | p3@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_DNASE1L3_5end |
Coexpression cluster: | C1157_Hepatic_neuroectodermal_liver_Hepatocyte_Adipocyte_spleen_kidney |
Association with transcript: | -8bp_to_ENST00000463694_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 7.07e-11 | 3 |
immature conventional dendritic cell | 3.96e-10 | 5 |
common dendritic progenitor | 3.96e-10 | 5 |
fat cell | 4.40e-10 | 15 |
adipocyte of breast | 4.31e-08 | 2 |
subcutaneous preadipocyte | 3.63e-07 | 2 |
conventional dendritic cell | 9.82e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.65e-13 | 114 |
hemopoietic organ | 5.96e-12 | 7 |
immune organ | 5.96e-12 | 7 |
spleen | 2.61e-11 | 3 |
gastrointestinal system mesentery | 2.61e-11 | 3 |
stomach region | 2.61e-11 | 3 |
mesentery | 2.61e-11 | 3 |
gastrointestinal system serosa | 2.61e-11 | 3 |
mesentery of stomach | 2.61e-11 | 3 |
gut mesentery | 2.61e-11 | 3 |
dorsal mesentery | 2.61e-11 | 3 |
dorsal mesogastrium | 2.61e-11 | 3 |
peritoneal cavity | 2.61e-11 | 3 |
spleen primordium | 2.61e-11 | 3 |
cavity lining | 7.00e-10 | 12 |
serous membrane | 7.00e-10 | 12 |
subdivision of trunk | 1.66e-08 | 112 |
abdominal segment of trunk | 2.18e-08 | 60 |
abdomen | 2.18e-08 | 60 |
pituitary gland | 9.23e-08 | 2 |
meninx | 1.13e-07 | 2 |
membrane organ | 1.13e-07 | 2 |
meningeal cluster | 1.13e-07 | 2 |
gastrointestinal system | 3.16e-07 | 25 |
intraembryonic coelom | 4.99e-07 | 12 |
small intestine | 9.24e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.