FFCP PHASE1:Hg19::chr3:69591495..69591521,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23150|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24886|TSSclassifier=W|UniProt=|association_with_transcript=211bp_to_uc003dnw.2_5end|coexpression_cluster_id=C314|description=CAGE_peak_7_at_FRMD4B_5end|id=chr3:69591495..69591521,-|ontology_enrichment_celltype=CL:0000557!2.50e-32!71;CL:0002009!2.38e-29!65;CL:0000839!1.70e-28!70;CL:0000766!3.86e-28!76;CL:0002194!6.42e-28!63;CL:0000576!6.42e-28!63;CL:0000040!6.42e-28!63;CL:0000559!6.42e-28!63;CL:0002057!3.39e-20!42;CL:0000763!3.59e-19!112;CL:0000049!3.59e-19!112;CL:0000860!9.31e-18!45;CL:0002031!3.98e-10!124;CL:0000738!4.29e-10!140;CL:0002087!2.07e-09!119;CL:0002393!3.64e-08!9;CL:0002397!3.64e-08!9;CL:0000037!1.10e-07!172;CL:0000566!1.10e-07!172;CL:0002032!2.31e-07!165;CL:0000837!2.31e-07!165|ontology_enrichment_celltype_v019=CL:0000766;5.67e-15;69!CL:0000576;6.68e-14;48!CL:0000235;8.20e-11;6!CL:0000473;1.52e-10;39!CL:0000234;1.52e-10;39!CL:0002393;4.67e-10;6!CL:0002397;4.67e-10;6!CL:0000763;1.66e-07;100!CL:0000860;3.69e-07;33!CL:0002057;3.69e-07;33!CL:0000840;4.06e-07;5|ontology_enrichment_celltype_v019_2=CL:0000557,1.21e-39,67;CL:0000766,2.23e-35,72;CL:0000839,1.49e-34,66;CL:0002009,2.02e-34,61;CL:0002194,3.61e-32,59;CL:0000576,3.61e-32,59;CL:0000040,3.61e-32,59;CL:0000559,3.61e-32,59;CL:0000763,4.26e-28,108;CL:0000049,4.26e-28,108;CL:0000473,4.60e-23,48;CL:0000234,4.60e-23,48;CL:0000738,5.16e-16,136;CL:0000860,6.46e-16,42;CL:0002057,6.46e-16,42;CL:0000037,2.12e-14,168;CL:0002031,2.16e-14,120;CL:0002032,2.87e-13,161;CL:0000837,2.87e-13,161;CL:0002087,6.80e-13,115;CL:0002393,7.71e-13,9;CL:0002397,7.71e-13,9;CL:0000988,7.97e-13,177;CL:0000235,8.40e-11,6;CL:0000840,4.98e-07,5;CL:0001029,4.98e-07,5|ontology_enrichment_development_v019=CL:0002057;5.76e-11;42!CL:0000049;7.88e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!7.89e-28!102;UBERON:0003061!7.89e-28!102;UBERON:0002193!8.55e-26!112;UBERON:0001474!9.11e-26!86;UBERON:0002371!1.22e-25!80;UBERON:0007023!3.03e-25!115;UBERON:0004765!2.24e-21!101;UBERON:0001434!2.24e-21!101;UBERON:0002405!1.14e-20!115;UBERON:0000062!1.68e-13!511;UBERON:0002050!2.26e-13!605;UBERON:0005423!2.26e-13!605;UBERON:0000467!2.33e-13!625;UBERON:0000922!2.90e-13!612;UBERON:0000480!3.25e-13!626;UBERON:0000923!3.72e-13!604;UBERON:0005291!3.72e-13!604;UBERON:0006598!3.72e-13!604;UBERON:0002532!3.72e-13!604;UBERON:0000468!3.28e-11!659;UBERON:0003081!1.93e-10!216;UBERON:0001049!4.78e-10!57;UBERON:0005068!4.78e-10!57;UBERON:0006241!4.78e-10!57;UBERON:0007135!4.78e-10!57;UBERON:0003080!1.63e-07!42;UBERON:0002204!2.39e-07!167;UBERON:0002780!5.26e-07!41;UBERON:0001890!5.26e-07!41;UBERON:0006240!5.26e-07!41;UBERON:0002616!5.38e-07!59|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.62e-33,98;UBERON:0003061,4.62e-33,98;UBERON:0002371,4.86e-33,76;UBERON:0002193,1.12e-29,108;UBERON:0001474,1.86e-29,82;UBERON:0002405,2.19e-28,93;UBERON:0004765,5.63e-28,90;UBERON:0001434,1.44e-23,100;UBERON:0003081,8.12e-14,203;UBERON:0007023,3.15e-09,114;UBERON:0002050,5.63e-09,564;UBERON:0002204,6.54e-09,167;UBERON:0000923,2.15e-08,560;UBERON:0010316,2.15e-08,560;UBERON:0005291,2.15e-08,560;UBERON:0006598,2.15e-08,560;UBERON:0010317,2.15e-08,560;UBERON:0002532,2.15e-08,560;UBERON:0005423,8.03e-08,581;UBERON:0000922,1.39e-07,592|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.15148819429164,3.2511385896376,0,0.30120591877825,0.369754010166788,0,0,0,12.1878989877013,5.61524452916397,6.07630438004385,17.689322464954,14.8991086368731,19.5757431401982,0.872389432677388,1.51150377475524,0.727752183563449,0.464858073811369,0.822335776043652,1.85823822537062,0.575384784644301,1.2808035326455,1.18241114944293,0.344745680736619,2.5819387343353,0,0.376484679085209,0.818718450173537,0.898893937780338,0.918251677112708,1.92557416245656,0,0.659702600373432,1.39624560335142,0.852449501065388,0.580418477257168,0.56738522469114,1.86846674698672,2.00998932205395,1.0429658368404,1.73751075764093,1.21079900526674,1.84138817993782,1.58231193720442,3.38008458099107,4.25208599930087,6.9187353017764,9.0986191228661,7.0583139635508,12.3758701756752,1.42506371870624,1.39241674039363,1.82664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0.947109008176067,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0.589405839739707,0.728590576585084,1.11235332835329,14.6046327144608,15.4975466196348,16.8856609858959,0.715471872916026,0,0,0.596287222100115,0,0,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0,0.805658634218294,0.760272105718513,0,2.20597848207521,0,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.622422070799533,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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84843,2.02117188958219,1.30630048738177,0.684466602170562,0.471464371102113,1.29099969706817,1.66330178273007,0.89543595472072,0,0,0,4.69281884806909,0.733448665097199,0.406896178315738,0,1.40891655513718,0|short_description=p7@FRMD4B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23150 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24886 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=211bp_to_uc003dnw.2_5end | |||
|coexpression_cluster_id=C314 | |||
|description=CAGE_peak_7_at_FRMD4B_5end | |||
|id=chr3:69591495..69591521,- | |||
|ontology_enrichment_celltype=CL:0000557!2.50e-32!71;CL:0002009!2.38e-29!65;CL:0000839!1.70e-28!70;CL:0000766!3.86e-28!76;CL:0002194!6.42e-28!63;CL:0000576!6.42e-28!63;CL:0000040!6.42e-28!63;CL:0000559!6.42e-28!63;CL:0002057!3.39e-20!42;CL:0000763!3.59e-19!112;CL:0000049!3.59e-19!112;CL:0000860!9.31e-18!45;CL:0002031!3.98e-10!124;CL:0000738!4.29e-10!140;CL:0002087!2.07e-09!119;CL:0002393!3.64e-08!9;CL:0002397!3.64e-08!9;CL:0000037!1.10e-07!172;CL:0000566!1.10e-07!172;CL:0002032!2.31e-07!165;CL:0000837!2.31e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000766;5.67e-15;69!CL:0000576;6.68e-14;48!CL:0000235;8.20e-11;6!CL:0000473;1.52e-10;39!CL:0000234;1.52e-10;39!CL:0002393;4.67e-10;6!CL:0002397;4.67e-10;6!CL:0000763;1.66e-07;100!CL:0000860;3.69e-07;33!CL:0002057;3.69e-07;33!CL:0000840;4.06e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.21e-39,67;CL:0000766,2.23e-35,72;CL:0000839,1.49e-34,66;CL:0002009,2.02e-34,61;CL:0002194,3.61e-32,59;CL:0000576,3.61e-32,59;CL:0000040,3.61e-32,59;CL:0000559,3.61e-32,59;CL:0000763,4.26e-28,108;CL:0000049,4.26e-28,108;CL:0000473,4.60e-23,48;CL:0000234,4.60e-23,48;CL:0000738,5.16e-16,136;CL:0000860,6.46e-16,42;CL:0002057,6.46e-16,42;CL:0000037,2.12e-14,168;CL:0002031,2.16e-14,120;CL:0002032,2.87e-13,161;CL:0000837,2.87e-13,161;CL:0002087,6.80e-13,115;CL:0002393,7.71e-13,9;CL:0002397,7.71e-13,9;CL:0000988,7.97e-13,177;CL:0000235,8.40e-11,6;CL:0000840,4.98e-07,5;CL:0001029,4.98e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;5.76e-11;42!CL:0000049;7.88e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.89e-28!102;UBERON:0003061!7.89e-28!102;UBERON:0002193!8.55e-26!112;UBERON:0001474!9.11e-26!86;UBERON:0002371!1.22e-25!80;UBERON:0007023!3.03e-25!115;UBERON:0004765!2.24e-21!101;UBERON:0001434!2.24e-21!101;UBERON:0002405!1.14e-20!115;UBERON:0000062!1.68e-13!511;UBERON:0002050!2.26e-13!605;UBERON:0005423!2.26e-13!605;UBERON:0000467!2.33e-13!625;UBERON:0000922!2.90e-13!612;UBERON:0000480!3.25e-13!626;UBERON:0000923!3.72e-13!604;UBERON:0005291!3.72e-13!604;UBERON:0006598!3.72e-13!604;UBERON:0002532!3.72e-13!604;UBERON:0000468!3.28e-11!659;UBERON:0003081!1.93e-10!216;UBERON:0001049!4.78e-10!57;UBERON:0005068!4.78e-10!57;UBERON:0006241!4.78e-10!57;UBERON:0007135!4.78e-10!57;UBERON:0003080!1.63e-07!42;UBERON:0002204!2.39e-07!167;UBERON:0002780!5.26e-07!41;UBERON:0001890!5.26e-07!41;UBERON:0006240!5.26e-07!41;UBERON:0002616!5.38e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.62e-33,98;UBERON:0003061,4.62e-33,98;UBERON:0002371,4.86e-33,76;UBERON:0002193,1.12e-29,108;UBERON:0001474,1.86e-29,82;UBERON:0002405,2.19e-28,93;UBERON:0004765,5.63e-28,90;UBERON:0001434,1.44e-23,100;UBERON:0003081,8.12e-14,203;UBERON:0007023,3.15e-09,114;UBERON:0002050,5.63e-09,564;UBERON:0002204,6.54e-09,167;UBERON:0000923,2.15e-08,560;UBERON:0010316,2.15e-08,560;UBERON:0005291,2.15e-08,560;UBERON:0006598,2.15e-08,560;UBERON:0010317,2.15e-08,560;UBERON:0002532,2.15e-08,560;UBERON:0005423,8.03e-08,581;UBERON:0000922,1.39e-07,592 | |||
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| |||
|short_description=p7@FRMD4B | |||
}} |
Revision as of 01:16, 13 September 2013
Short description: | p7@FRMD4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_FRMD4B_5end |
Coexpression cluster: | C314_Macrophage_Dendritic_Monocytederived_CD14_Esophageal_Mast_Keratinocyte |
Association with transcript: | 211bp_to_uc003dnw.2_5end |
EntrezGene: | FRMD4B |
HGNC: | 24886 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.21e-39 | 67 |
myeloid leukocyte | 2.23e-35 | 72 |
myeloid lineage restricted progenitor cell | 1.49e-34 | 66 |
macrophage dendritic cell progenitor | 2.02e-34 | 61 |
monopoietic cell | 3.61e-32 | 59 |
monocyte | 3.61e-32 | 59 |
monoblast | 3.61e-32 | 59 |
promonocyte | 3.61e-32 | 59 |
myeloid cell | 4.26e-28 | 108 |
common myeloid progenitor | 4.26e-28 | 108 |
defensive cell | 4.60e-23 | 48 |
phagocyte | 4.60e-23 | 48 |
leukocyte | 5.16e-16 | 136 |
classical monocyte | 6.46e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.46e-16 | 42 |
hematopoietic stem cell | 2.12e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 2.16e-14 | 120 |
hematopoietic oligopotent progenitor cell | 2.87e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.87e-13 | 161 |
nongranular leukocyte | 6.80e-13 | 115 |
intermediate monocyte | 7.71e-13 | 9 |
CD14-positive, CD16-positive monocyte | 7.71e-13 | 9 |
hematopoietic cell | 7.97e-13 | 177 |
macrophage | 8.40e-11 | 6 |
immature conventional dendritic cell | 4.98e-07 | 5 |
common dendritic progenitor | 4.98e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.62e-33 | 98 |
blood island | 4.62e-33 | 98 |
bone marrow | 4.86e-33 | 76 |
hemolymphoid system | 1.12e-29 | 108 |
bone element | 1.86e-29 | 82 |
immune system | 2.19e-28 | 93 |
skeletal element | 5.63e-28 | 90 |
skeletal system | 1.44e-23 | 100 |
lateral plate mesoderm | 8.12e-14 | 203 |
adult organism | 3.15e-09 | 114 |
embryonic structure | 5.63e-09 | 564 |
musculoskeletal system | 6.54e-09 | 167 |
germ layer | 2.15e-08 | 560 |
germ layer / neural crest | 2.15e-08 | 560 |
embryonic tissue | 2.15e-08 | 560 |
presumptive structure | 2.15e-08 | 560 |
germ layer / neural crest derived structure | 2.15e-08 | 560 |
epiblast (generic) | 2.15e-08 | 560 |
developing anatomical structure | 8.03e-08 | 581 |
embryo | 1.39e-07 | 592 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.