FFCP PHASE1:Hg19::chr3:77089602..77089618,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6092|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10250|TSSclassifier=W|UniProt=F8W703,F8WBR3|association_with_transcript=-262bp_to_ENST00000332191,ENST00000473767_5end|coexpression_cluster_id=C24|description=CAGE_peak_12_at_ROBO2_5end|id=chr3:77089602..77089618,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000540;9.26e-10;6!CL:0000404;9.26e-10;6!CL:0000047;7.52e-08;2|ontology_enrichment_celltype_v019_2=CL:0000047,2.20e-15,8;CL:0000540,8.48e-10,6;CL:0000031,8.48e-10,6;CL:0000404,8.48e-10,6|ontology_enrichment_development_v019=CL:0000031;9.26e-10;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002780!4.47e-32!41;UBERON:0001890!4.47e-32!41;UBERON:0006240!4.47e-32!41;UBERON:0001017!5.38e-32!82;UBERON:0005743!1.24e-31!86;UBERON:0003080!3.88e-31!42;UBERON:0001049!5.06e-31!57;UBERON:0005068!5.06e-31!57;UBERON:0006241!5.06e-31!57;UBERON:0007135!5.06e-31!57;UBERON:0000073!1.40e-27!94;UBERON:0001016!1.40e-27!94;UBERON:0002346!2.71e-26!90;UBERON:0002616!2.40e-25!59;UBERON:0001893!3.00e-25!34;UBERON:0001869!1.54e-24!32;UBERON:0002791!1.30e-23!33;UBERON:0000955!2.67e-23!69;UBERON:0006238!2.67e-23!69;UBERON:0003075!5.43e-23!86;UBERON:0007284!5.43e-23!86;UBERON:0002020!9.21e-23!34;UBERON:0003528!9.21e-23!34;UBERON:0003056!2.60e-22!61;UBERON:0007023!1.64e-21!115;UBERON:0002619!2.87e-18!22;UBERON:0000924!3.81e-18!173;UBERON:0006601!3.81e-18!173;UBERON:0000153!5.53e-18!129;UBERON:0007811!5.53e-18!129;UBERON:0001950!1.78e-17!20;UBERON:0000033!5.89e-16!123;UBERON:0004121!8.35e-16!169;UBERON:0000956!1.08e-15!25;UBERON:0000203!1.08e-15!25;UBERON:0002420!7.47e-12!9;UBERON:0007245!7.47e-12!9;UBERON:0010009!7.47e-12!9;UBERON:0010011!7.47e-12!9;UBERON:0000454!7.47e-12!9;UBERON:0009663!2.17e-11!7;UBERON:0000369!1.72e-09!4;UBERON:0002435!1.72e-09!4;UBERON:0000204!1.72e-09!4;UBERON:0010082!1.72e-09!4;UBERON:0002308!1.14e-08!9;UBERON:0000125!1.14e-08!9;UBERON:0001894!2.41e-08!7;UBERON:0006222!2.41e-08!7;UBERON:0001872!8.14e-08!5;UBERON:0005383!2.20e-07!3;UBERON:0005382!2.20e-07!3;UBERON:0000475!2.39e-07!365;UBERON:0000025!4.40e-07!194;UBERON:0001871!8.79e-07!7|ontology_enrichment_uberon_v019=UBERON:0001905;3.14e-28;2!UBERON:0002757;3.14e-28;2!UBERON:0010134;3.14e-28;2!UBERON:0005408;3.14e-28;2!UBERON:0001899;3.14e-28;2!UBERON:0003296;1.23e-14;4!UBERON:0010133;1.23e-14;4!UBERON:0002784;1.23e-14;4!UBERON:0007029;2.11e-14;1!UBERON:0000945;1.35e-11;5!UBERON:0010039;1.35e-11;5!UBERON:0000922;1.62e-10;49!UBERON:0001894;9.33e-09;7|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.14e-28,2;UBERON:0002757,3.14e-28,2;UBERON:0010134,3.14e-28,2;UBERON:0005408,3.14e-28,2;UBERON:0001899,3.14e-28,2;UBERON:0003296,1.23e-14,4;UBERON:0010133,1.23e-14,4;UBERON:0002784,1.23e-14,4;UBERON:0007029,2.41e-14,1;UBERON:0001017,1.65e-09,81;UBERON:0001894,9.33e-09,7;UBERON:0006222,9.33e-09,7;UBERON:0001016,1.68e-08,89;UBERON:0011216,2.12e-08,223;UBERON:0000945,1.45e-07,8;UBERON:0010039,1.45e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,1.54657762555539,0.837581326671744,2.55175500661265,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0.19924798825107,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0.885741385813839,0.120596438625408,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90723894776454,0,0,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,1.53036380815245,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,3.20702469264564,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.18224866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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6092 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10250 | |||
|TSSclassifier=W | |||
|UniProt=F8W703,F8WBR3 | |||
|association_with_transcript=-262bp_to_ENST00000332191,ENST00000473767_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_12_at_ROBO2_5end | |||
|id=chr3:77089602..77089618,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;9.26e-10;6!CL:0000404;9.26e-10;6!CL:0000047;7.52e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.20e-15,8;CL:0000540,8.48e-10,6;CL:0000031,8.48e-10,6;CL:0000404,8.48e-10,6 | |||
|ontology_enrichment_development_v019=CL:0000031;9.26e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!4.47e-32!41;UBERON:0001890!4.47e-32!41;UBERON:0006240!4.47e-32!41;UBERON:0001017!5.38e-32!82;UBERON:0005743!1.24e-31!86;UBERON:0003080!3.88e-31!42;UBERON:0001049!5.06e-31!57;UBERON:0005068!5.06e-31!57;UBERON:0006241!5.06e-31!57;UBERON:0007135!5.06e-31!57;UBERON:0000073!1.40e-27!94;UBERON:0001016!1.40e-27!94;UBERON:0002346!2.71e-26!90;UBERON:0002616!2.40e-25!59;UBERON:0001893!3.00e-25!34;UBERON:0001869!1.54e-24!32;UBERON:0002791!1.30e-23!33;UBERON:0000955!2.67e-23!69;UBERON:0006238!2.67e-23!69;UBERON:0003075!5.43e-23!86;UBERON:0007284!5.43e-23!86;UBERON:0002020!9.21e-23!34;UBERON:0003528!9.21e-23!34;UBERON:0003056!2.60e-22!61;UBERON:0007023!1.64e-21!115;UBERON:0002619!2.87e-18!22;UBERON:0000924!3.81e-18!173;UBERON:0006601!3.81e-18!173;UBERON:0000153!5.53e-18!129;UBERON:0007811!5.53e-18!129;UBERON:0001950!1.78e-17!20;UBERON:0000033!5.89e-16!123;UBERON:0004121!8.35e-16!169;UBERON:0000956!1.08e-15!25;UBERON:0000203!1.08e-15!25;UBERON:0002420!7.47e-12!9;UBERON:0007245!7.47e-12!9;UBERON:0010009!7.47e-12!9;UBERON:0010011!7.47e-12!9;UBERON:0000454!7.47e-12!9;UBERON:0009663!2.17e-11!7;UBERON:0000369!1.72e-09!4;UBERON:0002435!1.72e-09!4;UBERON:0000204!1.72e-09!4;UBERON:0010082!1.72e-09!4;UBERON:0002308!1.14e-08!9;UBERON:0000125!1.14e-08!9;UBERON:0001894!2.41e-08!7;UBERON:0006222!2.41e-08!7;UBERON:0001872!8.14e-08!5;UBERON:0005383!2.20e-07!3;UBERON:0005382!2.20e-07!3;UBERON:0000475!2.39e-07!365;UBERON:0000025!4.40e-07!194;UBERON:0001871!8.79e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.14e-28;2!UBERON:0002757;3.14e-28;2!UBERON:0010134;3.14e-28;2!UBERON:0005408;3.14e-28;2!UBERON:0001899;3.14e-28;2!UBERON:0003296;1.23e-14;4!UBERON:0010133;1.23e-14;4!UBERON:0002784;1.23e-14;4!UBERON:0007029;2.11e-14;1!UBERON:0000945;1.35e-11;5!UBERON:0010039;1.35e-11;5!UBERON:0000922;1.62e-10;49!UBERON:0001894;9.33e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.14e-28,2;UBERON:0002757,3.14e-28,2;UBERON:0010134,3.14e-28,2;UBERON:0005408,3.14e-28,2;UBERON:0001899,3.14e-28,2;UBERON:0003296,1.23e-14,4;UBERON:0010133,1.23e-14,4;UBERON:0002784,1.23e-14,4;UBERON:0007029,2.41e-14,1;UBERON:0001017,1.65e-09,81;UBERON:0001894,9.33e-09,7;UBERON:0006222,9.33e-09,7;UBERON:0001016,1.68e-08,89;UBERON:0011216,2.12e-08,223;UBERON:0000945,1.45e-07,8;UBERON:0010039,1.45e-07,8 | |||
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|short_description=p12@ROBO2 | |||
}} |
Revision as of 01:25, 13 September 2013
Short description: | p12@ROBO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_ROBO2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -262bp_to_ENST00000332191, ENST00000473767_5end |
EntrezGene: | ROBO2 |
HGNC: | 10250 |
UniProt: | F8W703F8WBR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.20e-15 | 8 |
neuron | 8.48e-10 | 6 |
neuroblast | 8.48e-10 | 6 |
electrically signaling cell | 8.48e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.14e-28 | 2 |
regional part of epithalamus | 3.14e-28 | 2 |
secretory circumventricular organ | 3.14e-28 | 2 |
circumventricular organ | 3.14e-28 | 2 |
epithalamus | 3.14e-28 | 2 |
gland of diencephalon | 1.23e-14 | 4 |
neuroendocrine gland | 1.23e-14 | 4 |
regional part of diencephalon | 1.23e-14 | 4 |
surface | 2.41e-14 | 1 |
central nervous system | 1.65e-09 | 81 |
diencephalon | 9.33e-09 | 7 |
future diencephalon | 9.33e-09 | 7 |
nervous system | 1.68e-08 | 89 |
organ system subdivision | 2.12e-08 | 223 |
stomach | 1.45e-07 | 8 |
food storage organ | 1.45e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.