FFCP PHASE1:Hg19::chr4:109089573..109089585,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51176|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6551|TSSclassifier=S|UniProt=Q9UJU2|association_with_transcript=0bp_to_ENST00000265165,uc003hyt.1,uc003hyu.1,uc003hyv.1,uc010imb.1_5end|coexpression_cluster_id=C18|description=CAGE_peak_8_at_LEF1_5end|id=chr4:109089573..109089585,-|ontology_enrichment_celltype=CL:0000791!8.64e-20!18;CL:0000789!8.64e-20!18;CL:0002420!8.64e-20!18;CL:0002419!8.64e-20!18;CL:0000790!8.64e-20!18;CL:0000084!2.32e-18!25;CL:0000827!2.32e-18!25;CL:0000625!4.22e-14!11;CL:0000542!3.04e-12!53;CL:0000051!3.04e-12!53;CL:0000838!1.37e-11!52;CL:0000624!7.21e-09!6;CL:0000738!1.90e-08!140;CL:0002087!4.90e-08!119|ontology_enrichment_celltype_v019=CL:0000791;3.60e-43;18!CL:0000789;3.60e-43;18!CL:0002419;3.60e-43;18!CL:0000084;5.66e-43;25!CL:0000625;8.26e-28;11!CL:0000624;7.11e-20;6!CL:0000542;1.14e-13;53!CL:0000898;9.44e-11;3!CL:0000226;2.01e-10;3!CL:0000842;2.01e-10;3!CL:0000623;1.62e-09;3!CL:0000815;7.98e-08;2!CL:0000792;7.98e-08;2!CL:0002677;7.98e-08;2|ontology_enrichment_celltype_v019_2=CL:0000791,3.23e-43,18;CL:0000789,3.23e-43,18;CL:0002420,3.23e-43,18;CL:0002419,3.23e-43,18;CL:0000790,3.23e-43,18;CL:0000084,5.28e-43,25;CL:0000827,5.28e-43,25;CL:0000625,7.82e-28,11;CL:0000838,4.31e-27,52;CL:0000542,1.84e-26,53;CL:0000051,1.84e-26,53;CL:0000624,6.68e-20,6;CL:0002087,3.01e-13,115;CL:0000738,3.56e-11,136;CL:0000898,9.15e-11,3;CL:0000226,1.69e-10,3;CL:0000842,1.69e-10,3;CL:0000623,1.18e-09,3;CL:0000825,1.18e-09,3;CL:0002031,3.51e-09,120;CL:0000037,1.51e-08,168;CL:0000815,7.60e-08,2;CL:0000792,7.60e-08,2;CL:0002677,7.60e-08,2;CL:0000988,8.88e-08,177|ontology_enrichment_development_v019=CL:0000790;3.60e-43;18!CL:0000051;1.14e-13;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.57e-20!115;UBERON:0000178!2.41e-10!15;UBERON:0000179!2.41e-10!15;UBERON:0000463!2.41e-10!15;UBERON:0002298!4.24e-07!8|ontology_enrichment_uberon_v019=UBERON:0000178;1.03e-18;15!UBERON:0000179;1.03e-18;15!UBERON:0000463;1.03e-18;15!UBERON:0002390;8.05e-11;32!UBERON:0002193;8.76e-09;42!UBERON:0002370;5.18e-08;2!UBERON:0005058;5.18e-08;2!UBERON:0009113;5.18e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.11e-18,15;UBERON:0000179,1.11e-18,15;UBERON:0000463,1.11e-18,15;UBERON:0002370,2.80e-08,4;UBERON:0005058,2.80e-08,4;UBERON:0009113,2.80e-08,4;UBERON:0003295,2.80e-08,4;UBERON:0005562,2.80e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,0,0.928896739896456,0,0,0,0,0,0,0.553995408531877,0.802177789880567,1.08505435357926,0,0.647787332037959,0,0,0,0,0,0.411167888021826,0.309706370895104,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,0,0,14.3598132183098,6.6811829667358,6.37364646898479,3.34372990781356,19.2294137313818,22.2520468695325,21.4309401248702,0.222820913770347,5.89211814949674,6.20294904834139,7.04090045789041,0.384273959177026,0.260118695119756,2.46656856905514,2.48715016007264,4.63684937176084,28.7675932534397,24.6137561842536,18.8163942848958,1.0197840842781,5.3650869104269,7.90343124610049,5.06039384039006,9.875527844047,7.1619179924206,5.70271226669025,3.46322773878877,2.68771883424279,2.49861453104692,8.05042656949657,6.56902397536837,2.62088766192152,0.802320587350522,8.83428863685074,0,0,0,0,0,0,0,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.063497894292169,0,0,0,0,0.901029173531752,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56139988262505,1.94064817373566,2.95188983443421,0.254094624222463,0,0,0.167516265334349,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.6165768359324,7.33428282783297,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.01489521846434,0.764637207142375,1.13929437434833,6.90872148827588,3.70226045777575,3.24236655596359,2.16012574895246,1.58625035258854,0,0,0,0.743212700502875,3.75099953738757,16.14919844009,3.50737800003409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,1.65770349318689,0,0,0,0,0,0,0,0,0,0,0.969332746095218,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51176 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |||
|TSSclassifier=S | |||
|UniProt=Q9UJU2 | |||
|association_with_transcript=0bp_to_ENST00000265165,uc003hyt.1,uc003hyu.1,uc003hyv.1,uc010imb.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_8_at_LEF1_5end | |||
|id=chr4:109089573..109089585,- | |||
|ontology_enrichment_celltype=CL:0000791!8.64e-20!18;CL:0000789!8.64e-20!18;CL:0002420!8.64e-20!18;CL:0002419!8.64e-20!18;CL:0000790!8.64e-20!18;CL:0000084!2.32e-18!25;CL:0000827!2.32e-18!25;CL:0000625!4.22e-14!11;CL:0000542!3.04e-12!53;CL:0000051!3.04e-12!53;CL:0000838!1.37e-11!52;CL:0000624!7.21e-09!6;CL:0000738!1.90e-08!140;CL:0002087!4.90e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.60e-43;18!CL:0000789;3.60e-43;18!CL:0002419;3.60e-43;18!CL:0000084;5.66e-43;25!CL:0000625;8.26e-28;11!CL:0000624;7.11e-20;6!CL:0000542;1.14e-13;53!CL:0000898;9.44e-11;3!CL:0000226;2.01e-10;3!CL:0000842;2.01e-10;3!CL:0000623;1.62e-09;3!CL:0000815;7.98e-08;2!CL:0000792;7.98e-08;2!CL:0002677;7.98e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.23e-43,18;CL:0000789,3.23e-43,18;CL:0002420,3.23e-43,18;CL:0002419,3.23e-43,18;CL:0000790,3.23e-43,18;CL:0000084,5.28e-43,25;CL:0000827,5.28e-43,25;CL:0000625,7.82e-28,11;CL:0000838,4.31e-27,52;CL:0000542,1.84e-26,53;CL:0000051,1.84e-26,53;CL:0000624,6.68e-20,6;CL:0002087,3.01e-13,115;CL:0000738,3.56e-11,136;CL:0000898,9.15e-11,3;CL:0000226,1.69e-10,3;CL:0000842,1.69e-10,3;CL:0000623,1.18e-09,3;CL:0000825,1.18e-09,3;CL:0002031,3.51e-09,120;CL:0000037,1.51e-08,168;CL:0000815,7.60e-08,2;CL:0000792,7.60e-08,2;CL:0002677,7.60e-08,2;CL:0000988,8.88e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.60e-43;18!CL:0000051;1.14e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.57e-20!115;UBERON:0000178!2.41e-10!15;UBERON:0000179!2.41e-10!15;UBERON:0000463!2.41e-10!15;UBERON:0002298!4.24e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.03e-18;15!UBERON:0000179;1.03e-18;15!UBERON:0000463;1.03e-18;15!UBERON:0002390;8.05e-11;32!UBERON:0002193;8.76e-09;42!UBERON:0002370;5.18e-08;2!UBERON:0005058;5.18e-08;2!UBERON:0009113;5.18e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.11e-18,15;UBERON:0000179,1.11e-18,15;UBERON:0000463,1.11e-18,15;UBERON:0002370,2.80e-08,4;UBERON:0005058,2.80e-08,4;UBERON:0009113,2.80e-08,4;UBERON:0003295,2.80e-08,4;UBERON:0005562,2.80e-08,4 | |||
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|short_description=p8@LEF1 | |||
}} |
Revision as of 01:59, 13 September 2013
Short description: | p8@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_LEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000265165, uc003hyt.1, uc003hyu.1, uc003hyv.1, uc010imb.1_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.23e-43 | 18 |
alpha-beta T cell | 3.23e-43 | 18 |
immature T cell | 3.23e-43 | 18 |
mature T cell | 3.23e-43 | 18 |
immature alpha-beta T cell | 3.23e-43 | 18 |
T cell | 5.28e-43 | 25 |
pro-T cell | 5.28e-43 | 25 |
CD8-positive, alpha-beta T cell | 7.82e-28 | 11 |
lymphoid lineage restricted progenitor cell | 4.31e-27 | 52 |
lymphocyte | 1.84e-26 | 53 |
common lymphoid progenitor | 1.84e-26 | 53 |
CD4-positive, alpha-beta T cell | 6.68e-20 | 6 |
nongranular leukocyte | 3.01e-13 | 115 |
leukocyte | 3.56e-11 | 136 |
naive T cell | 9.15e-11 | 3 |
single nucleate cell | 1.69e-10 | 3 |
mononuclear cell | 1.69e-10 | 3 |
natural killer cell | 1.18e-09 | 3 |
pro-NK cell | 1.18e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 3.51e-09 | 120 |
hematopoietic stem cell | 1.51e-08 | 168 |
regulatory T cell | 7.60e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 7.60e-08 | 2 |
naive regulatory T cell | 7.60e-08 | 2 |
hematopoietic cell | 8.88e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 1.11e-18 | 15 |
haemolymphatic fluid | 1.11e-18 | 15 |
organism substance | 1.11e-18 | 15 |
thymus | 2.80e-08 | 4 |
hemolymphoid system gland | 2.80e-08 | 4 |
thymic region | 2.80e-08 | 4 |
pharyngeal gland | 2.80e-08 | 4 |
thymus primordium | 2.80e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.