FFCP PHASE1:Mm9::chr14:62058668..62058706,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=16648|HGNC=|UniProt=O35344,E9Q1R3,Q543M7|association_with_transcript=77bp_to_ENSMUST00000022496,ENSMUST00000053719,NM_008466,uc007ufw.2_5end|description=CAGE_peak_1_at_Kpna3_5end|id=chr14:62058668..62058706,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!3.99e-08!333;UBERON:0002021!2.56e-07!10;UBERON:0000411!2.56e-07!10;UBERON:0001950!2.56e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.56e-07,10;UBERON:0000411,2.56e-07,10;UBERON:0001950,2.56e-07,10|phase1_expression=14.0930985452219,17.0997949743287,14.5599756604652,17.5429242557961,14.5259761684441,22.1600638923695,16.8201101228778,13.0414556675992,26.18670232021,32.3009046324351,23.1144257104432,31.5897749621532,14.2096605842901,11.1023911072127,45.6360373687458,41.7099050823041,41.2741508095607,16.4040325986284,18.5104485367747,16.5511964201232,22.4514285998824,22.539045922601,18.2839852397255,18.3991286212418,14.2233754261645,14.3557991028755,19.3842898271584,18.5305260109865,13.6816862008589,17.1380488236753,13.3038306393183,26.0362576118449,15.9916844771988,15.8481681015439,18.7753552838328,23.4390849955474,22.4586291888606,17.5783284909501,17.9707129240474,14.6586648312664,19.4116391050235,14.3439551841274,14.5653105909346,32.7331726736501,29.3993100536592,29.1839335937074,9.38869613217647,7.19483016055474,2.85592037554813,11.0825042472342,6.29938897314131,8.62515386189829,14.2615215149076,15.9579671242496,18.821252751978,33.4437266846731,34.6705462325896,22.17389996793,21.2432283902578,16.9277113367051,16.4796164911607,5.76035704517525,2.66788438833342,5.39939830368839,3.9554654502679,9.2362414942993,7.19040265244171,8.06858441175265,21.8785081970888,13.5005938331691,21.453146057841,20.5668708770739,20.0990372265968,25.6005770359254,16.5812664861549,11.0306254393203,29.731287869835,36.6462660304489,41.012944379417,20.3104883104499,18.6634792948916,27.0874952689515,22.8930059181132,33.7657566019008,35.6019917319968,37.7124589406295,37.8708670925614,29.6375118862228,35.9699418332624,42.4712167800135,22.0297011413275,20.6501730475533,29.918738683141,29.6836755400799,46.7839020562322,48.3869038065122,37.7795490154412,31.3591793543626,21.0426663728324,17.666978725517,14.7885590765515,29.5150898052931,56.0571527354621,92.4386714099331,29.4427815775251,30.909903587962,27.8038444758131,28.8885215689222,45.5730675219022,20.1881309128162,24.8084017275574,23.1393763517227,20.0635482612771,15.3737093363675,24.1056849628195,21.6146537087042,21.0115722574218,36.8728360145775,35.384422077995,49.5006560839072,51.2352322828113,45.0933985415757,22.3670113461747,34.8409148443741,28.2753054198164,18.6483650302272,22.525243407113,8.99854096490112,18.5522531526674,44.6376105426372,31.1100409916666,41.0889731409067,43.9775530086459,39.3801804288709,38.8563643326377,36.9910079794487,26.3763952372319,30.8529287113031,13.3943061969848,38.7213014831112,35.5228809288181,28.2779588453172,33.6716182736003,31.3466021098287,36.3314905468091,43.5586648968489,34.9507432607789,45.0143865085887,27.8082710883366,31.2025032276902,25.8648152521005,21.7003775103299,29.1949611686878,29.253181987862,29.6326276427439,19.9034266818493,26.6841011179029,16.9849618695712,17.0498099637356,27.5477277472218,27.4395490177883,26.6491850962302,26.5154103855435,28.3340493716262,20.6717931269087,24.8811320882936,23.8763327245661,30.7092850425656,32.5828502828691,32.833492815819,39.0751662011025,36.4037968689077,46.3250743264117,42.0066090719964,39.3242203814918,44.6606017726094,16.5209391491899,25.3872543997003,31.9932375802851,30.190767341857,33.3766724824222,29.6474781196314,23.3496946037114,22.446623881282,17.0830462156024,22.3990578424655,22.8715040008245,26.2622543094319,28.2697926322724,20.6728463990471,20.533114738096,19.515844778928,13.6560888686219,32.2180805559435,18.0332377076929,32.1769097995597,26.3775382547971,21.9525116256697,22.0063149192415,21.6986917530015,24.8057989989372,18.0159859325829,32.9062416066735,40.7102057947269,39.3117990226406,37.5519727682706,40.1663040349236,33.7648023653384,24.4440817710163,30.2080944323351,28.6979351391813,23.3377201209869,25.8782771749238,23.8170206507842,25.587089195394,31.8249386213361,34.0855085691633,24.6046195895317,23.6484083413254,30.1291344715071,26.7262561364922,30.3843703537587,26.9893785531777,21.775813467436,17.615229425565,19.1230974900643,26.9556096421587,22.1464689648775,21.8453033060757,21.7938208571932,22.6217326244323,18.659728557015,28.6503439484617,33.1782467129413,21.6376280128376,21.5230662117691,41.5826028068381,41.8445721134165,29.6722251131783,106.290260353041,25.871673992133,28.5020283336546,27.3587715120655,27.720380562496,29.6322236529584,45.2922449262132,30.765613327292,28.3488182173973,26.4842811224171,26.3483479465882,28.6718972120703,13.7110514823787,29.3196526836437,31.5092934877543,30.5313818181915,25.4919667962731,21.4649725444973,25.838895926558,17.1275097870848,25.2096821314021,25.8428293168221,30.900367005588,28.8762876491624,34.4480066150039,18.9753495434998,30.9406629744561,28.5969268833182,33.671424583855,12.0303575917962,23.3627368184436,26.7783752799833,22.2961022002588,26.9860393787478,12.178597964584,39.1901752466396,31.9866427004368,29.9918621354748,41.551335741253,37.9441402735378,33.3530474852702,26.9781497447088,29.7095028538561,20.9866202373493,44.5020724825223,33.1489508747834,17.7492706448371,38.8908507476395,42.1945343690508,50.9869469399424,35.003060500598,22.267174329195,24.3515527043165,24.461395363383,11.4560474161814,30.0519193902079,25.0082944566024,30.1334900892826,32.8268624742716,30.5707589244649,30.8839353221239,26.6144127435582,23.0345228945946,27.3487593645683,24.2322332103901,23.675103424736,24.6702300972565,22.005979230794,19.8340212110929,21.6988503442588,26.3571555765614,24.7623773542541,24.4784243506626,32.8209748052475,34.7881133989449,33.6995107321703,38.8693678372659,25.3406519112705,31.4295528924371,29.4920268159595,31.1506450461418,31.1929727006586,27.7651488391128,36.1839341577714,33.7227942826813,32.2354792150649,28.6346365788627,32.5509321670773,30.3067301167038,23.8428880450401,52.3747186151138,44.3971906748129,48.8940518521643,38.613461763738,41.7289523109531,30.5922434985427,32.2346858710387,36.2282560643621,32.6021867622986,55.9104324190896,50.1754507792823,60.726924424576,49.6655696973257,50.0110239432569,65.7192690729039,41.851395014372,47.2837263385431,43.9548136714678,42.4563455636492,53.7618460486035,39.104437593301,25.6100408631201,34.5211538236978,36.8919166225249,37.5040757238029,33.1147624424407,38.5285557036732,45.2496085524459,39.4207650351524,38.021894983536,33.9527414494937,39.7039991672301,35.6620098895122,38.4243287313053,42.3901385241936,35.9241410429052,33.373295140221,39.1481605763141,36.3581332731961,42.5157872957915,42.061766059763,36.2423008719928,37.2086826578761,33.879376949519,37.9919589433627,32.3782511984807,49.7201754617523,39.1115847876082,36.474247657753,36.5395855822456,38.5152526088453,31.5107903240661,33.6212945373546,30.0934313130581,19.2354145012218,32.2825619654664,34.594239701776,35.7709180968737,44.1182838239031,51.0109238364927|short_description=p1@Kpna3}} | ||
|EntrezGene=16648 | |||
|HGNC= | |||
|UniProt=O35344,E9Q1R3,Q543M7 | |||
|association_with_transcript=77bp_to_ENSMUST00000022496,ENSMUST00000053719,NM_008466,uc007ufw.2_5end | |||
|description=CAGE_peak_1_at_Kpna3_5end | |||
|id=chr14:62058668..62058706,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.99e-08!333;UBERON:0002021!2.56e-07!10;UBERON:0000411!2.56e-07!10;UBERON:0001950!2.56e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.56e-07,10;UBERON:0000411,2.56e-07,10;UBERON:0001950,2.56e-07,10 | |||
|phase1_expression=14.0930985452219,17.0997949743287,14.5599756604652,17.5429242557961,14.5259761684441,22.1600638923695,16.8201101228778,13.0414556675992,26.18670232021,32.3009046324351,23.1144257104432,31.5897749621532,14.2096605842901,11.1023911072127,45.6360373687458,41.7099050823041,41.2741508095607,16.4040325986284,18.5104485367747,16.5511964201232,22.4514285998824,22.539045922601,18.2839852397255,18.3991286212418,14.2233754261645,14.3557991028755,19.3842898271584,18.5305260109865,13.6816862008589,17.1380488236753,13.3038306393183,26.0362576118449,15.9916844771988,15.8481681015439,18.7753552838328,23.4390849955474,22.4586291888606,17.5783284909501,17.9707129240474,14.6586648312664,19.4116391050235,14.3439551841274,14.5653105909346,32.7331726736501,29.3993100536592,29.1839335937074,9.38869613217647,7.19483016055474,2.85592037554813,11.0825042472342,6.29938897314131,8.62515386189829,14.2615215149076,15.9579671242496,18.821252751978,33.4437266846731,34.6705462325896,22.17389996793,21.2432283902578,16.9277113367051,16.4796164911607,5.76035704517525,2.66788438833342,5.39939830368839,3.9554654502679,9.2362414942993,7.19040265244171,8.06858441175265,21.8785081970888,13.5005938331691,21.453146057841,20.5668708770739,20.0990372265968,25.6005770359254,16.5812664861549,11.0306254393203,29.731287869835,36.6462660304489,41.012944379417,20.3104883104499,18.6634792948916,27.0874952689515,22.8930059181132,33.7657566019008,35.6019917319968,37.7124589406295,37.8708670925614,29.6375118862228,35.9699418332624,42.4712167800135,22.0297011413275,20.6501730475533,29.918738683141,29.6836755400799,46.7839020562322,48.3869038065122,37.7795490154412,31.3591793543626,21.0426663728324,17.666978725517,14.7885590765515,29.5150898052931,56.0571527354621,92.4386714099331,29.4427815775251,30.909903587962,27.8038444758131,28.8885215689222,45.5730675219022,20.1881309128162,24.8084017275574,23.1393763517227,20.0635482612771,15.3737093363675,24.1056849628195,21.6146537087042,21.0115722574218,36.8728360145775,35.384422077995,49.5006560839072,51.2352322828113,45.0933985415757,22.3670113461747,34.8409148443741,28.2753054198164,18.6483650302272,22.525243407113,8.99854096490112,18.5522531526674,44.6376105426372,31.1100409916666,41.0889731409067,43.9775530086459,39.3801804288709,38.8563643326377,36.9910079794487,26.3763952372319,30.8529287113031,13.3943061969848,38.7213014831112,35.5228809288181,28.2779588453172,33.6716182736003,31.3466021098287,36.3314905468091,43.5586648968489,34.9507432607789,45.0143865085887,27.8082710883366,31.2025032276902,25.8648152521005,21.7003775103299,29.1949611686878,29.253181987862,29.6326276427439,19.9034266818493,26.6841011179029,16.9849618695712,17.0498099637356,27.5477277472218,27.4395490177883,26.6491850962302,26.5154103855435,28.3340493716262,20.6717931269087,24.8811320882936,23.8763327245661,30.7092850425656,32.5828502828691,32.833492815819,39.0751662011025,36.4037968689077,46.3250743264117,42.0066090719964,39.3242203814918,44.6606017726094,16.5209391491899,25.3872543997003,31.9932375802851,30.190767341857,33.3766724824222,29.6474781196314,23.3496946037114,22.446623881282,17.0830462156024,22.3990578424655,22.8715040008245,26.2622543094319,28.2697926322724,20.6728463990471,20.533114738096,19.515844778928,13.6560888686219,32.2180805559435,18.0332377076929,32.1769097995597,26.3775382547971,21.9525116256697,22.0063149192415,21.6986917530015,24.8057989989372,18.0159859325829,32.9062416066735,40.7102057947269,39.3117990226406,37.5519727682706,40.1663040349236,33.7648023653384,24.4440817710163,30.2080944323351,28.6979351391813,23.3377201209869,25.8782771749238,23.8170206507842,25.587089195394,31.8249386213361,34.0855085691633,24.6046195895317,23.6484083413254,30.1291344715071,26.7262561364922,30.3843703537587,26.9893785531777,21.775813467436,17.615229425565,19.1230974900643,26.9556096421587,22.1464689648775,21.8453033060757,21.7938208571932,22.6217326244323,18.659728557015,28.6503439484617,33.1782467129413,21.6376280128376,21.5230662117691,41.5826028068381,41.8445721134165,29.6722251131783,106.290260353041,25.871673992133,28.5020283336546,27.3587715120655,27.720380562496,29.6322236529584,45.2922449262132,30.765613327292,28.3488182173973,26.4842811224171,26.3483479465882,28.6718972120703,13.7110514823787,29.3196526836437,31.5092934877543,30.5313818181915,25.4919667962731,21.4649725444973,25.838895926558,17.1275097870848,25.2096821314021,25.8428293168221,30.900367005588,28.8762876491624,34.4480066150039,18.9753495434998,30.9406629744561,28.5969268833182,33.671424583855,12.0303575917962,23.3627368184436,26.7783752799833,22.2961022002588,26.9860393787478,12.178597964584,39.1901752466396,31.9866427004368,29.9918621354748,41.551335741253,37.9441402735378,33.3530474852702,26.9781497447088,29.7095028538561,20.9866202373493,44.5020724825223,33.1489508747834,17.7492706448371,38.8908507476395,42.1945343690508,50.9869469399424,35.003060500598,22.267174329195,24.3515527043165,24.461395363383,11.4560474161814,30.0519193902079,25.0082944566024,30.1334900892826,32.8268624742716,30.5707589244649,30.8839353221239,26.6144127435582,23.0345228945946,27.3487593645683,24.2322332103901,23.675103424736,24.6702300972565,22.005979230794,19.8340212110929,21.6988503442588,26.3571555765614,24.7623773542541,24.4784243506626,32.8209748052475,34.7881133989449,33.6995107321703,38.8693678372659,25.3406519112705,31.4295528924371,29.4920268159595,31.1506450461418,31.1929727006586,27.7651488391128,36.1839341577714,33.7227942826813,32.2354792150649,28.6346365788627,32.5509321670773,30.3067301167038,23.8428880450401,52.3747186151138,44.3971906748129,48.8940518521643,38.613461763738,41.7289523109531,30.5922434985427,32.2346858710387,36.2282560643621,32.6021867622986,55.9104324190896,50.1754507792823,60.726924424576,49.6655696973257,50.0110239432569,65.7192690729039,41.851395014372,47.2837263385431,43.9548136714678,42.4563455636492,53.7618460486035,39.104437593301,25.6100408631201,34.5211538236978,36.8919166225249,37.5040757238029,33.1147624424407,38.5285557036732,45.2496085524459,39.4207650351524,38.021894983536,33.9527414494937,39.7039991672301,35.6620098895122,38.4243287313053,42.3901385241936,35.9241410429052,33.373295140221,39.1481605763141,36.3581332731961,42.5157872957915,42.061766059763,36.2423008719928,37.2086826578761,33.879376949519,37.9919589433627,32.3782511984807,49.7201754617523,39.1115847876082,36.474247657753,36.5395855822456,38.5152526088453,31.5107903240661,33.6212945373546,30.0934313130581,19.2354145012218,32.2825619654664,34.594239701776,35.7709180968737,44.1182838239031,51.0109238364927 | |||
|short_description=p1@Kpna3 | |||
}} | |||
Revision as of 02:41, 13 September 2013
| Short description: | p1@Kpna3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Kpna3_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 77bp_to_ENSMUST00000022496, ENSMUST00000053719, NM_008466, uc007ufw.2_5end |
| EntrezGene: | Kpna3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| occipital lobe | 2.56e-07 | 10 |
| visual cortex | 2.56e-07 | 10 |
| neocortex | 2.56e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
