FFCP PHASE1:Hg19::chr4:93225100..93225103,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2895|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4576|TSSclassifier=N|UniProt=O43424|association_with_transcript=-446bp_to_ENST00000282020,NM_001510,uc010ikx.2,uc011cdt.1,uc011cdu.1_5end|coexpression_cluster_id=C11|description=CAGE_peak_12_at_GRID2_5end|id=chr4:93225100..93225103,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;8.98e-131;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!7.92e-64!57;UBERON:0005068!7.92e-64!57;UBERON:0006241!7.92e-64!57;UBERON:0007135!7.92e-64!57;UBERON:0002616!4.98e-56!59;UBERON:0000955!9.05e-47!69;UBERON:0006238!9.05e-47!69;UBERON:0003075!3.65e-45!86;UBERON:0007284!3.65e-45!86;UBERON:0005743!1.32e-44!86;UBERON:0002346!5.25e-43!90;UBERON:0001017!6.87e-43!82;UBERON:0001869!9.56e-41!32;UBERON:0000073!4.21e-40!94;UBERON:0001016!4.21e-40!94;UBERON:0002020!1.67e-38!34;UBERON:0003528!1.67e-38!34;UBERON:0001893!2.83e-38!34;UBERON:0002780!2.15e-36!41;UBERON:0001890!2.15e-36!41;UBERON:0006240!2.15e-36!41;UBERON:0003080!1.75e-35!42;UBERON:0002791!5.54e-34!33;UBERON:0003076!1.24e-31!15;UBERON:0003057!1.24e-31!15;UBERON:0004733!1.41e-30!12;UBERON:0002028!1.41e-30!12;UBERON:0007277!1.41e-30!12;UBERON:0007023!3.48e-30!115;UBERON:0004732!3.62e-28!13;UBERON:0000033!1.82e-27!123;UBERON:0003056!3.34e-27!61;UBERON:0000153!5.01e-26!129;UBERON:0007811!5.01e-26!129;UBERON:0002619!1.85e-24!22;UBERON:0000956!1.74e-21!25;UBERON:0000203!1.74e-21!25;UBERON:0002680!2.05e-21!9;UBERON:0001895!2.05e-21!9;UBERON:0010092!2.05e-21!9;UBERON:0001950!2.89e-21!20;UBERON:0004121!7.38e-21!169;UBERON:0002308!1.76e-20!9;UBERON:0000125!1.76e-20!9;UBERON:0002420!2.44e-20!9;UBERON:0007245!2.44e-20!9;UBERON:0010009!2.44e-20!9;UBERON:0010011!2.44e-20!9;UBERON:0000454!2.44e-20!9;UBERON:0000924!2.73e-20!173;UBERON:0006601!2.73e-20!173;UBERON:0000025!6.78e-18!194;UBERON:0000369!4.74e-17!4;UBERON:0002435!4.74e-17!4;UBERON:0000204!4.74e-17!4;UBERON:0010082!4.74e-17!4;UBERON:0009663!5.13e-17!7;UBERON:0002298!2.06e-15!8;UBERON:0000349!8.89e-14!5;UBERON:0004111!1.31e-13!241;UBERON:0000064!2.07e-12!219;UBERON:0002037!2.39e-12!6;UBERON:0006215!2.39e-12!6;UBERON:0000200!2.05e-11!6;UBERON:0000988!3.62e-11!3;UBERON:0001896!4.90e-11!3;UBERON:0005290!4.90e-11!3;UBERON:0010096!4.90e-11!3;UBERON:0005383!6.95e-11!3;UBERON:0005382!6.95e-11!3;UBERON:0000477!8.29e-11!286;UBERON:0000483!8.44e-11!309;UBERON:0000119!1.18e-10!312;UBERON:0001874!7.18e-09!1;UBERON:0001871!7.67e-09!7;UBERON:0002902!1.42e-08!1;UBERON:0009899!1.42e-08!1;UBERON:0007190!1.65e-08!1;UBERON:0002581!1.91e-08!1;UBERON:0001882!2.06e-08!1;UBERON:0005403!2.06e-08!1;UBERON:0002022!2.22e-08!1;UBERON:0000475!1.63e-07!365;UBERON:0002021!6.85e-07!5|ontology_enrichment_uberon_v019=UBERON:0002037;2.83e-66;6!UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.83e-66,6;UBERON:0006215,2.83e-66,6;UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,1.54810963903714,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2895 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4576 | |||
|TSSclassifier=N | |||
|UniProt=O43424 | |||
|association_with_transcript=-446bp_to_ENST00000282020,NM_001510,uc010ikx.2,uc011cdt.1,uc011cdu.1_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_12_at_GRID2_5end | |||
|id=chr4:93225100..93225103,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.98e-131;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.92e-64!57;UBERON:0005068!7.92e-64!57;UBERON:0006241!7.92e-64!57;UBERON:0007135!7.92e-64!57;UBERON:0002616!4.98e-56!59;UBERON:0000955!9.05e-47!69;UBERON:0006238!9.05e-47!69;UBERON:0003075!3.65e-45!86;UBERON:0007284!3.65e-45!86;UBERON:0005743!1.32e-44!86;UBERON:0002346!5.25e-43!90;UBERON:0001017!6.87e-43!82;UBERON:0001869!9.56e-41!32;UBERON:0000073!4.21e-40!94;UBERON:0001016!4.21e-40!94;UBERON:0002020!1.67e-38!34;UBERON:0003528!1.67e-38!34;UBERON:0001893!2.83e-38!34;UBERON:0002780!2.15e-36!41;UBERON:0001890!2.15e-36!41;UBERON:0006240!2.15e-36!41;UBERON:0003080!1.75e-35!42;UBERON:0002791!5.54e-34!33;UBERON:0003076!1.24e-31!15;UBERON:0003057!1.24e-31!15;UBERON:0004733!1.41e-30!12;UBERON:0002028!1.41e-30!12;UBERON:0007277!1.41e-30!12;UBERON:0007023!3.48e-30!115;UBERON:0004732!3.62e-28!13;UBERON:0000033!1.82e-27!123;UBERON:0003056!3.34e-27!61;UBERON:0000153!5.01e-26!129;UBERON:0007811!5.01e-26!129;UBERON:0002619!1.85e-24!22;UBERON:0000956!1.74e-21!25;UBERON:0000203!1.74e-21!25;UBERON:0002680!2.05e-21!9;UBERON:0001895!2.05e-21!9;UBERON:0010092!2.05e-21!9;UBERON:0001950!2.89e-21!20;UBERON:0004121!7.38e-21!169;UBERON:0002308!1.76e-20!9;UBERON:0000125!1.76e-20!9;UBERON:0002420!2.44e-20!9;UBERON:0007245!2.44e-20!9;UBERON:0010009!2.44e-20!9;UBERON:0010011!2.44e-20!9;UBERON:0000454!2.44e-20!9;UBERON:0000924!2.73e-20!173;UBERON:0006601!2.73e-20!173;UBERON:0000025!6.78e-18!194;UBERON:0000369!4.74e-17!4;UBERON:0002435!4.74e-17!4;UBERON:0000204!4.74e-17!4;UBERON:0010082!4.74e-17!4;UBERON:0009663!5.13e-17!7;UBERON:0002298!2.06e-15!8;UBERON:0000349!8.89e-14!5;UBERON:0004111!1.31e-13!241;UBERON:0000064!2.07e-12!219;UBERON:0002037!2.39e-12!6;UBERON:0006215!2.39e-12!6;UBERON:0000200!2.05e-11!6;UBERON:0000988!3.62e-11!3;UBERON:0001896!4.90e-11!3;UBERON:0005290!4.90e-11!3;UBERON:0010096!4.90e-11!3;UBERON:0005383!6.95e-11!3;UBERON:0005382!6.95e-11!3;UBERON:0000477!8.29e-11!286;UBERON:0000483!8.44e-11!309;UBERON:0000119!1.18e-10!312;UBERON:0001874!7.18e-09!1;UBERON:0001871!7.67e-09!7;UBERON:0002902!1.42e-08!1;UBERON:0009899!1.42e-08!1;UBERON:0007190!1.65e-08!1;UBERON:0002581!1.91e-08!1;UBERON:0001882!2.06e-08!1;UBERON:0005403!2.06e-08!1;UBERON:0002022!2.22e-08!1;UBERON:0000475!1.63e-07!365;UBERON:0002021!6.85e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.83e-66;6!UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.83e-66,6;UBERON:0006215,2.83e-66,6;UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
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|short_description=p12@GRID2 | |||
}} |
Revision as of 12:20, 13 September 2013
Short description: | p12@GRID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_GRID2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -446bp_to_ENST00000282020, NM_001510, uc010ikx.2, uc011cdt.1, uc011cdu.1_5end |
EntrezGene: | GRID2 |
HGNC: | 4576 |
UniProt: | O43424 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.83e-66 | 6 |
rhombic lip | 2.83e-66 | 6 |
regional part of metencephalon | 9.75e-45 | 9 |
metencephalon | 9.75e-45 | 9 |
future metencephalon | 9.75e-45 | 9 |
segmental subdivision of hindbrain | 5.98e-34 | 12 |
hindbrain | 5.98e-34 | 12 |
presumptive hindbrain | 5.98e-34 | 12 |
segmental subdivision of nervous system | 1.86e-31 | 13 |
posterior neural tube | 1.82e-27 | 15 |
chordal neural plate | 1.82e-27 | 15 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.