FFCP PHASE1:Hg19::chr5:131562778..131562789,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8974|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8547|TSSclassifier=S|UniProt=O15460|association_with_transcript=145bp_to_ENST00000379100,ENST00000379104,NM_001017973,NM_004199,uc003kwg.2,uc003kwh.2_5end|description=CAGE_peak_19_at_P4HA2_5end|id=chr5:131562778..131562789,-|ontology_enrichment_celltype=CL:0000188!4.52e-08!9;CL:0000515!2.80e-07!4;CL:0002575!6.41e-07!2;CL:0000569!8.57e-07!4;CL:0000011!8.57e-07!4|ontology_enrichment_celltype_v019=CL:0002575;9.07e-18;2!CL:0000188;9.73e-16;9!CL:0000669;1.44e-09;4!CL:0002569;8.48e-07;6!CL:0002540;8.48e-07;6|ontology_enrichment_celltype_v019_2=CL:0002575,7.67e-18,2;CL:0000188,1.05e-15,9;CL:0000669,1.32e-09,4;CL:0002540,7.58e-07,6;CL:0002569,9.49e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!1.26e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002118!2.87e-09!5;UBERON:0004532!2.87e-09!5;UBERON:0000992!4.78e-07!13|ontology_enrichment_uberon_v019=UBERON:0001134;2.66e-09;16!UBERON:0002036;2.66e-09;16!UBERON:0003422;8.48e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0003422,9.49e-07,6|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.283604451492204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0.194874010322397,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,1.08524321078289,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,1.71571711905428,0,0,0,0,0,0,0,0.153461973288062,0,0.384417447767103,0,0.160853921143607,0,0.308419387605311,0,0.164254312027618,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45006077438183,0.154048617114644,0,0.413509717453592,0,0,0.340906509664404,3.73934549716297,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0,0,0,0.855877976067841,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0,0,1.77962244319307,0.686520205190771,0,0.15543720058278,0.147855149989634,0.159296767163702,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0.796191777397232,1.60011105865261,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p19@P4HA2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8974 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8547 | |||
|TSSclassifier=S | |||
|UniProt=O15460 | |||
|association_with_transcript=145bp_to_ENST00000379100,ENST00000379104,NM_001017973,NM_004199,uc003kwg.2,uc003kwh.2_5end | |||
|description=CAGE_peak_19_at_P4HA2_5end | |||
|id=chr5:131562778..131562789,- | |||
|ontology_enrichment_celltype=CL:0000188!4.52e-08!9;CL:0000515!2.80e-07!4;CL:0002575!6.41e-07!2;CL:0000569!8.57e-07!4;CL:0000011!8.57e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002575;9.07e-18;2!CL:0000188;9.73e-16;9!CL:0000669;1.44e-09;4!CL:0002569;8.48e-07;6!CL:0002540;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,7.67e-18,2;CL:0000188,1.05e-15,9;CL:0000669,1.32e-09,4;CL:0002540,7.58e-07,6;CL:0002569,9.49e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.26e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002118!2.87e-09!5;UBERON:0004532!2.87e-09!5;UBERON:0000992!4.78e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.66e-09;16!UBERON:0002036;2.66e-09;16!UBERON:0003422;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003422,9.49e-07,6 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.283604451492204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0.194874010322397,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,1.08524321078289,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,1.71571711905428,0,0,0,0,0,0,0,0.153461973288062,0,0.384417447767103,0,0.160853921143607,0,0.308419387605311,0,0.164254312027618,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45006077438183,0.154048617114644,0,0.413509717453592,0,0,0.340906509664404,3.73934549716297,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0,0,0,0.855877976067841,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.467426619694449,0,0,0,1.77962244319307,0.686520205190771,0,0.15543720058278,0.147855149989634,0.159296767163702,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0.796191777397232,1.60011105865261,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p19@P4HA2 | |||
}} |
Revision as of 13:04, 13 September 2013
Short description: | p19@P4HA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_P4HA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 145bp_to_ENST00000379100, ENST00000379104, NM_001017973, NM_004199, uc003kwg.2, uc003kwh.2_5end |
EntrezGene: | P4HA2 |
HGNC: | 8547 |
UniProt: | O15460 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 7.67e-18 | 2 |
cell of skeletal muscle | 1.05e-15 | 9 |
pericyte cell | 1.32e-09 | 4 |
mesenchymal stem cell of the bone marrow | 7.58e-07 | 6 |
mesenchymal stem cell of umbilical cord | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mesenchyme of umbilical cord | 9.49e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.