FFCP PHASE1:Mm9::chr19:29175877..29175928,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=59028|HGNC=|MCL_coexpression_id=101|UniProt=Q9JJT0|association_with_transcript=12bp_to_ENSMUST00000064393,NM_021525,uc008hda.1,uc012bkh.1_5end|description=CAGE_peak_1_at_Rcl1_5end|id=chr19:29175877..29175928,+|ontology_enrichment_celltype=CL:0000988!8.86e-11!32;CL:0002032!8.86e-11!32;CL:0000037!8.86e-11!32;CL:0000566!8.86e-11!32;CL:0000837!8.86e-11!32;CL:0002320!3.56e-10!46;CL:0000134!3.56e-10!46;CL:0000063!8.21e-09!66;CL:0000542!1.08e-07!13;CL:0000051!1.08e-07!13;CL:0002031!1.12e-07!25;CL:0000838!1.59e-07!12;CL:0000034!1.91e-07!97;CL:0000084!4.58e-07!11;CL:0000827!4.58e-07!11;CL:0000219!5.07e-07!54|ontology_enrichment_celltype_v019_2=CL:0000988,8.86e-11,32;CL:0002032,8.86e-11,32;CL:0000037,8.86e-11,32;CL:0000837,8.86e-11,32;CL:0002320,3.56e-10,46;CL:0000134,3.56e-10,46;CL:0000542,1.08e-07,13;CL:0000051,1.08e-07,13;CL:0002031,1.12e-07,25;CL:0000838,1.59e-07,12;CL:0000034,1.90e-07,97;CL:0000084,4.58e-07,11;CL:0000827,4.58e-07,11;CL:0000219,5.07e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!1.19e-12!70;UBERON:0005057!6.79e-12!51;UBERON:0000949!2.19e-11!72;UBERON:0002365!3.36e-11!25;UBERON:0002330!3.36e-11!25;UBERON:0002107!4.76e-11!22;UBERON:0007499!4.76e-11!22;UBERON:0006925!4.76e-11!22;UBERON:0009497!4.76e-11!22;UBERON:0000015!4.76e-11!22;UBERON:0002423!4.76e-11!22;UBERON:0006235!4.76e-11!22;UBERON:0008835!4.76e-11!22;UBERON:0003894!4.76e-11!22;UBERON:0004161!4.76e-11!22;UBERON:0008836!4.76e-11!22;UBERON:0003929!1.62e-10!55;UBERON:0009854!2.94e-10!23;UBERON:0009856!2.94e-10!23;UBERON:0002384!3.56e-10!46;UBERON:0002530!4.85e-09!65;UBERON:0002368!1.24e-08!60;UBERON:0001041!7.09e-08!92;UBERON:0000077!2.89e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0000949,2.19e-11,72;UBERON:0002365,3.36e-11,25;UBERON:0002330,3.36e-11,25;UBERON:0002107,4.76e-11,22;UBERON:0007499,4.76e-11,22;UBERON:0006925,4.76e-11,22;UBERON:0009497,4.76e-11,22;UBERON:0000015,4.76e-11,22;UBERON:0002423,4.76e-11,22;UBERON:0006235,4.76e-11,22;UBERON:0008835,4.76e-11,22;UBERON:0003894,4.76e-11,22;UBERON:0004161,4.76e-11,22;UBERON:0008836,4.76e-11,22;UBERON:0003929,1.62e-10,55;UBERON:0009854,2.94e-10,23;UBERON:0009856,2.94e-10,23;UBERON:0002384,3.56e-10,46;UBERON:0002530,4.85e-09,65;UBERON:0002368,1.24e-08,60|phase1_expression=15.6945870162698,4.88565570695105,8.64498554840118,1.81478526784098,5.00895729946347,31.5613031194353,28.0335168714631,33.5720640948098,207.240999007253,220.254719268996,181.491046319035,162.575660032496,32.0145364971355,40.2133851127388,39.3069518942482,28.1440621671858,32.1798463938947,28.0761327168832,27.5600011547535,33.1023928402464,13.0116233931137,25.3191925562258,32.9111734315059,19.679068003589,22.2527002635155,13.7815671387605,15.5074318617267,17.8841123129288,14.0617330397717,17.1380488236753,22.6165120868411,67.3132513867209,55.9708956701959,15.8481681015439,45.6385559207014,53.693790450793,43.4880728838846,2.51118978442145,3.906676722619,0.523523743973798,0.588231488031014,0.683045484958446,1.45653105909346,20.1434908760924,18.5519784131712,20.0065959856233,15.6478268869608,15.9158364157726,12.5221124158649,9.52706505463989,13.1587236327841,11.5002051491977,34.0598690297205,29.7398478224651,37.9785993030984,15.9500850342287,14.3266719969378,9.28209766099396,17.8038485556446,16.9277113367051,19.0149421051854,14.9091594110418,18.6751907183339,13.498495759221,12.8552627133707,14.9200824138681,16.7776061890307,14.6002956022191,16.3829587447395,19.5758610580951,18.718921560273,27.9937964715728,26.5042249141936,16.2912762955889,18.0189485514284,17.4651569455904,19.82085857989,16.7270412891596,18.279177457493,12.5291973343684,14.5465353327831,12.5019208933622,17.3093459380856,22.5105044012672,18.9469827243245,24.1595440088408,21.0710087582672,21.8087351615602,28.5487748866104,13.8295954995417,12.4641730141721,43.8816177260507,86.3563593808843,60.4467574634355,49.3830077260229,52.4191457903883,20.364440919104,16.1908806449155,23.3807404142582,23.3204119176825,13.0984380392313,24.3820307087204,28.028576367731,21.3320010945999,23.5975234702223,22.2956681618087,21.2320266906209,25.3488212976313,28.2242293175417,17.813056687779,26.0227990149204,19.1813251336649,14.7593918243877,14.6200961336044,16.5800077061344,20.1066546127481,20.0227923864843,28.7752720270624,15.0383793831479,14.3972496453194,16.3422723660691,15.5160081003271,14.9113408974498,17.2740670236813,14.4518227701284,15.3274233125155,47.0873439308267,41.9931911695385,36.8503658511888,14.0803201040533,19.6725259212009,19.3507702253811,13.3844726548053,9.71718737855256,13.5062228963714,14.4394724130304,15.5814226690984,14.0579876789405,13.6470289554184,22.7277204357392,18.6072233436666,20.4612872945791,14.5850325142333,12.2070902446929,12.654788842147,13.7081680704789,14.6174690313177,12.4177617954728,25.8681591519411,18.3432897762785,15.4836989264275,22.3579647076126,17.2389294519871,14.2783388274088,15.4336602305958,23.2870092177637,25.9818879305897,41.4330130454691,41.772034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| ||
|EntrezGene=59028 | |||
|HGNC= | |||
|MCL_coexpression_id=101 | |||
|UniProt=Q9JJT0 | |||
|association_with_transcript=12bp_to_ENSMUST00000064393,NM_021525,uc008hda.1,uc012bkh.1_5end | |||
|description=CAGE_peak_1_at_Rcl1_5end | |||
|id=chr19:29175877..29175928,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.86e-11!32;CL:0002032!8.86e-11!32;CL:0000037!8.86e-11!32;CL:0000566!8.86e-11!32;CL:0000837!8.86e-11!32;CL:0002320!3.56e-10!46;CL:0000134!3.56e-10!46;CL:0000063!8.21e-09!66;CL:0000542!1.08e-07!13;CL:0000051!1.08e-07!13;CL:0002031!1.12e-07!25;CL:0000838!1.59e-07!12;CL:0000034!1.91e-07!97;CL:0000084!4.58e-07!11;CL:0000827!4.58e-07!11;CL:0000219!5.07e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.86e-11,32;CL:0002032,8.86e-11,32;CL:0000037,8.86e-11,32;CL:0000837,8.86e-11,32;CL:0002320,3.56e-10,46;CL:0000134,3.56e-10,46;CL:0000542,1.08e-07,13;CL:0000051,1.08e-07,13;CL:0002031,1.12e-07,25;CL:0000838,1.59e-07,12;CL:0000034,1.90e-07,97;CL:0000084,4.58e-07,11;CL:0000827,4.58e-07,11;CL:0000219,5.07e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.19e-12!70;UBERON:0005057!6.79e-12!51;UBERON:0000949!2.19e-11!72;UBERON:0002365!3.36e-11!25;UBERON:0002330!3.36e-11!25;UBERON:0002107!4.76e-11!22;UBERON:0007499!4.76e-11!22;UBERON:0006925!4.76e-11!22;UBERON:0009497!4.76e-11!22;UBERON:0000015!4.76e-11!22;UBERON:0002423!4.76e-11!22;UBERON:0006235!4.76e-11!22;UBERON:0008835!4.76e-11!22;UBERON:0003894!4.76e-11!22;UBERON:0004161!4.76e-11!22;UBERON:0008836!4.76e-11!22;UBERON:0003929!1.62e-10!55;UBERON:0009854!2.94e-10!23;UBERON:0009856!2.94e-10!23;UBERON:0002384!3.56e-10!46;UBERON:0002530!4.85e-09!65;UBERON:0002368!1.24e-08!60;UBERON:0001041!7.09e-08!92;UBERON:0000077!2.89e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000949,2.19e-11,72;UBERON:0002365,3.36e-11,25;UBERON:0002330,3.36e-11,25;UBERON:0002107,4.76e-11,22;UBERON:0007499,4.76e-11,22;UBERON:0006925,4.76e-11,22;UBERON:0009497,4.76e-11,22;UBERON:0000015,4.76e-11,22;UBERON:0002423,4.76e-11,22;UBERON:0006235,4.76e-11,22;UBERON:0008835,4.76e-11,22;UBERON:0003894,4.76e-11,22;UBERON:0004161,4.76e-11,22;UBERON:0008836,4.76e-11,22;UBERON:0003929,1.62e-10,55;UBERON:0009854,2.94e-10,23;UBERON:0009856,2.94e-10,23;UBERON:0002384,3.56e-10,46;UBERON:0002530,4.85e-09,65;UBERON:0002368,1.24e-08,60 | |||
|phase1_expression=15.6945870162698,4.88565570695105,8.64498554840118,1.81478526784098,5.00895729946347,31.5613031194353,28.0335168714631,33.5720640948098,207.240999007253,220.254719268996,181.491046319035,162.575660032496,32.0145364971355,40.2133851127388,39.3069518942482,28.1440621671858,32.1798463938947,28.0761327168832,27.5600011547535,33.1023928402464,13.0116233931137,25.3191925562258,32.9111734315059,19.679068003589,22.2527002635155,13.7815671387605,15.5074318617267,17.8841123129288,14.0617330397717,17.1380488236753,22.6165120868411,67.3132513867209,55.9708956701959,15.8481681015439,45.6385559207014,53.693790450793,43.4880728838846,2.51118978442145,3.906676722619,0.523523743973798,0.588231488031014,0.683045484958446,1.45653105909346,20.1434908760924,18.5519784131712,20.0065959856233,15.6478268869608,15.9158364157726,12.5221124158649,9.52706505463989,13.1587236327841,11.5002051491977,34.0598690297205,29.7398478224651,37.9785993030984,15.9500850342287,14.3266719969378,9.28209766099396,17.8038485556446,16.9277113367051,19.0149421051854,14.9091594110418,18.6751907183339,13.498495759221,12.8552627133707,14.9200824138681,16.7776061890307,14.6002956022191,16.3829587447395,19.5758610580951,18.718921560273,27.9937964715728,26.5042249141936,16.2912762955889,18.0189485514284,17.4651569455904,19.82085857989,16.7270412891596,18.279177457493,12.5291973343684,14.5465353327831,12.5019208933622,17.3093459380856,22.5105044012672,18.9469827243245,24.1595440088408,21.0710087582672,21.8087351615602,28.5487748866104,13.8295954995417,12.4641730141721,43.8816177260507,86.3563593808843,60.4467574634355,49.3830077260229,52.4191457903883,20.364440919104,16.1908806449155,23.3807404142582,23.3204119176825,13.0984380392313,24.3820307087204,28.028576367731,21.3320010945999,23.5975234702223,22.2956681618087,21.2320266906209,25.3488212976313,28.2242293175417,17.813056687779,26.0227990149204,19.1813251336649,14.7593918243877,14.6200961336044,16.5800077061344,20.1066546127481,20.0227923864843,28.7752720270624,15.0383793831479,14.3972496453194,16.3422723660691,15.5160081003271,14.9113408974498,17.2740670236813,14.4518227701284,15.3274233125155,47.0873439308267,41.9931911695385,36.8503658511888,14.0803201040533,19.6725259212009,19.3507702253811,13.3844726548053,9.71718737855256,13.5062228963714,14.4394724130304,15.5814226690984,14.0579876789405,13.6470289554184,22.7277204357392,18.6072233436666,20.4612872945791,14.5850325142333,12.2070902446929,12.654788842147,13.7081680704789,14.6174690313177,12.4177617954728,25.8681591519411,18.3432897762785,15.4836989264275,22.3579647076126,17.2389294519871,14.2783388274088,15.4336602305958,23.2870092177637,25.9818879305897,41.4330130454691,41.7720344111521,13.6703009873431,14.540615718828,8.82304101158973,10.6535131013345,8.26409773339096,7.55908853148153,7.44108623201305,7.77992864058896,7.35621656913168,6.58239399653922,7.22336841948019,6.4044359541226,5.26319954731196,10.7579556492615,8.99183005694491,16.1923260394378,14.5095503454791,2.97376904685418,23.800550999719,24.3148605610167,23.9203772016252,25.9023597257408,22.1851877085677,16.9007313322101,14.0766963323294,21.353807769503,17.4580892007452,16.3367885720175,12.7332142106337,13.4525220112193,18.8752075817387,12.9682829924817,14.1390304010601,28.4501851429623,22.0499629336777,21.4144697778853,19.5505274731502,18.0375813065892,17.8144982521409,12.0781785907331,10.0374900626129,12.0889020437859,13.8204823592417,53.3614728756868,33.5358662489349,37.739327061735,36.6525243187312,31.849039057995,33.7648023653384,27.4995919923933,32.2219673944908,53.9910305160868,35.1438608880744,30.1913233707445,28.6548529704748,39.3167468124346,48.4951445658455,41.2614051100398,55.9634484781506,12.0089573608293,20.2755810594419,21.8373068432315,20.5391553787978,13.6120344007331,12.3954630506944,8.56957107189649,11.3177515757523,10.0886492227962,8.858587585951,12.9158362612565,16.7140581010053,17.4411831684555,17.7918342055259,12.0633027151418,15.2293591469239,28.0305635620851,30.0771053472158,11.3990918891332,13.3621322715112,31.6394444576984,18.4303776859192,17.0374438484779,14.4462335389756,15.2950612390287,17.9226598464414,16.932699230262,18.3999745012741,12.5491317519217,12.2747460322751,11.4633455604492,23.1351347823701,20.1554920995741,19.5872164033981,17.4289046508326,23.7556977080451,25.2215762845929,26.9486506132029,32.3486205952284,23.5756349694873,21.5570381802964,22.4427657999067,27.1349707826632,21.4484900391728,19.9638531895444,30.0234920039025,25.3004660579997,20.6271086496374,20.0859367394735,17.4659261210371,17.7221396782374,15.4322665222746,13.6551979904551,15.5180871313801,13.4930196893739,17.0500371504176,23.2324990983073,14.6164128896036,18.0833286405069,18.7970328353287,24.0581995776899,19.1191972022254,19.8158091045207,16.5782308742512,15.7399651780119,13.9068976507882,19.8210221725509,15.6854019652049,22.2233432843654,20.3437933565066,19.2738861086645,25.6231553991305,47.2540035382918,44.9244161958942,44.0857916436112,9.54670618015114,18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| |||
|short_description=p1@Rcl1 | |||
}} |
Revision as of 17:19, 13 September 2013
Short description: | p1@Rcl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rcl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:101 |
Association with transcript: | 12bp_to_ENSMUST00000064393, NM_021525, uc008hda.1, uc012bkh.1_5end |
EntrezGene: | Rcl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.86e-11 | 32 |
hematopoietic oligopotent progenitor cell | 8.86e-11 | 32 |
hematopoietic stem cell | 8.86e-11 | 32 |
hematopoietic multipotent progenitor cell | 8.86e-11 | 32 |
connective tissue cell | 3.56e-10 | 46 |
mesenchymal cell | 3.56e-10 | 46 |
lymphocyte | 1.08e-07 | 13 |
common lymphoid progenitor | 1.08e-07 | 13 |
hematopoietic lineage restricted progenitor cell | 1.12e-07 | 25 |
lymphoid lineage restricted progenitor cell | 1.59e-07 | 12 |
stem cell | 1.90e-07 | 97 |
T cell | 4.58e-07 | 11 |
pro-T cell | 4.58e-07 | 11 |
motile cell | 5.07e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
endocrine system | 2.19e-11 | 72 |
exocrine gland | 3.36e-11 | 25 |
exocrine system | 3.36e-11 | 25 |
liver | 4.76e-11 | 22 |
epithelial sac | 4.76e-11 | 22 |
digestive gland | 4.76e-11 | 22 |
epithelium of foregut-midgut junction | 4.76e-11 | 22 |
anatomical boundary | 4.76e-11 | 22 |
hepatobiliary system | 4.76e-11 | 22 |
foregut-midgut junction | 4.76e-11 | 22 |
hepatic diverticulum | 4.76e-11 | 22 |
liver primordium | 4.76e-11 | 22 |
septum transversum | 4.76e-11 | 22 |
liver bud | 4.76e-11 | 22 |
gut epithelium | 1.62e-10 | 55 |
digestive tract diverticulum | 2.94e-10 | 23 |
sac | 2.94e-10 | 23 |
connective tissue | 3.56e-10 | 46 |
gland | 4.85e-09 | 65 |
endocrine gland | 1.24e-08 | 60 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.