FFCP PHASE1:Hg19::chr6:12718554..12718563,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=221692|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20990|TSSclassifier=S|UniProt=Q5R356|association_with_transcript=12bp_to_ENST00000379348,uc003nai.2_5end|coexpression_cluster_id=C3|description=CAGE_peak_43_at_PHACTR1_5end|id=chr6:12718554..12718563,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002615;3.27e-23;3|ontology_enrichment_celltype_v019_2=CL:0002615,4.09e-23,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001893!1.08e-67!34;UBERON:0001869!4.22e-66!32;UBERON:0002791!1.30e-63!33;UBERON:0002780!1.03e-60!41;UBERON:0001890!1.03e-60!41;UBERON:0006240!1.03e-60!41;UBERON:0003080!3.59e-59!42;UBERON:0002020!3.00e-56!34;UBERON:0003528!3.00e-56!34;UBERON:0002619!2.93e-50!22;UBERON:0001950!1.80e-48!20;UBERON:0000956!4.98e-44!25;UBERON:0000203!4.98e-44!25;UBERON:0001049!2.10e-42!57;UBERON:0005068!2.10e-42!57;UBERON:0006241!2.10e-42!57;UBERON:0007135!2.10e-42!57;UBERON:0002616!8.42e-41!59;UBERON:0003056!2.66e-39!61;UBERON:0000955!1.33e-36!69;UBERON:0006238!1.33e-36!69;UBERON:0001017!2.18e-35!82;UBERON:0005743!1.70e-33!86;UBERON:0000073!2.39e-32!94;UBERON:0001016!2.39e-32!94;UBERON:0003075!2.57e-31!86;UBERON:0007284!2.57e-31!86;UBERON:0002346!1.13e-29!90;UBERON:0000200!1.02e-28!6;UBERON:0007023!2.81e-26!115;UBERON:0000033!5.02e-20!123;UBERON:0000369!7.29e-20!4;UBERON:0002435!7.29e-20!4;UBERON:0000204!7.29e-20!4;UBERON:0010082!7.29e-20!4;UBERON:0002420!5.37e-19!9;UBERON:0007245!5.37e-19!9;UBERON:0010009!5.37e-19!9;UBERON:0010011!5.37e-19!9;UBERON:0000454!5.37e-19!9;UBERON:0000153!7.81e-19!129;UBERON:0007811!7.81e-19!129;UBERON:0009663!2.13e-17!7;UBERON:0002021!9.38e-16!5;UBERON:0004121!1.83e-15!169;UBERON:0005383!2.31e-15!3;UBERON:0005382!2.31e-15!3;UBERON:0000924!5.74e-15!173;UBERON:0006601!5.74e-15!173;UBERON:0002771!5.75e-15!3;UBERON:0001871!1.13e-14!7;UBERON:0002308!1.79e-13!9;UBERON:0000125!1.79e-13!9;UBERON:0001870!3.64e-11!2;UBERON:0001873!1.06e-10!2;UBERON:0010122!1.06e-10!2;UBERON:0002360!6.70e-10!2;UBERON:0000094!6.70e-10!2;UBERON:0007645!6.70e-10!2;UBERON:0000025!1.12e-09!194;UBERON:0000349!2.73e-09!5;UBERON:0001872!3.14e-09!5;UBERON:0000064!5.51e-08!219;UBERON:0004111!9.61e-07!241|ontology_enrichment_uberon_v019=UBERON:0002022;2.39e-66;1!UBERON:0002021;1.60e-14;5!UBERON:0001950;1.09e-13;20!UBERON:0002619;1.33e-12;22!UBERON:0003688;2.45e-12;6!UBERON:0002358;2.45e-12;6!UBERON:0003684;2.45e-12;6!UBERON:0001178;2.45e-12;6!UBERON:0000956;2.77e-11;25!UBERON:0000203;2.77e-11;25!UBERON:0004457;1.12e-08;9!UBERON:0000042;1.12e-08;9!UBERON:0002791;1.25e-08;32!UBERON:0001869;1.25e-08;32!UBERON:0001893;5.60e-08;34!UBERON:0002780;9.94e-08;41!UBERON:0001890;9.94e-08;41|ontology_enrichment_uberon_v019_2=UBERON:0002022,2.39e-66,1;UBERON:0002021,1.40e-14,5;UBERON:0001950,1.02e-13,20;UBERON:0002619,1.25e-12,22;UBERON:0003688,2.74e-12,6;UBERON:0002358,2.74e-12,6;UBERON:0003684,2.74e-12,6;UBERON:0001178,2.74e-12,6;UBERON:0000956,2.63e-11,25;UBERON:0000203,2.63e-11,25;UBERON:0002791,3.79e-09,32;UBERON:0001869,3.79e-09,32;UBERON:0003528,1.09e-08,34;UBERON:0002020,1.09e-08,34;UBERON:0001893,1.09e-08,34;UBERON:0002780,2.04e-07,41;UBERON:0001890,2.04e-07,41;UBERON:0003080,2.04e-07,41;UBERON:0006240,2.04e-07,41;UBERON:0004457,8.38e-07,12;UBERON:0000042,8.38e-07,12|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0.423863802319124,0,0,0,0,0,0,0,0.276149695926898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=221692 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20990 | |||
|TSSclassifier=S | |||
|UniProt=Q5R356 | |||
|association_with_transcript=12bp_to_ENST00000379348,uc003nai.2_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_43_at_PHACTR1_5end | |||
|id=chr6:12718554..12718563,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;3.27e-23;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,4.09e-23,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!1.08e-67!34;UBERON:0001869!4.22e-66!32;UBERON:0002791!1.30e-63!33;UBERON:0002780!1.03e-60!41;UBERON:0001890!1.03e-60!41;UBERON:0006240!1.03e-60!41;UBERON:0003080!3.59e-59!42;UBERON:0002020!3.00e-56!34;UBERON:0003528!3.00e-56!34;UBERON:0002619!2.93e-50!22;UBERON:0001950!1.80e-48!20;UBERON:0000956!4.98e-44!25;UBERON:0000203!4.98e-44!25;UBERON:0001049!2.10e-42!57;UBERON:0005068!2.10e-42!57;UBERON:0006241!2.10e-42!57;UBERON:0007135!2.10e-42!57;UBERON:0002616!8.42e-41!59;UBERON:0003056!2.66e-39!61;UBERON:0000955!1.33e-36!69;UBERON:0006238!1.33e-36!69;UBERON:0001017!2.18e-35!82;UBERON:0005743!1.70e-33!86;UBERON:0000073!2.39e-32!94;UBERON:0001016!2.39e-32!94;UBERON:0003075!2.57e-31!86;UBERON:0007284!2.57e-31!86;UBERON:0002346!1.13e-29!90;UBERON:0000200!1.02e-28!6;UBERON:0007023!2.81e-26!115;UBERON:0000033!5.02e-20!123;UBERON:0000369!7.29e-20!4;UBERON:0002435!7.29e-20!4;UBERON:0000204!7.29e-20!4;UBERON:0010082!7.29e-20!4;UBERON:0002420!5.37e-19!9;UBERON:0007245!5.37e-19!9;UBERON:0010009!5.37e-19!9;UBERON:0010011!5.37e-19!9;UBERON:0000454!5.37e-19!9;UBERON:0000153!7.81e-19!129;UBERON:0007811!7.81e-19!129;UBERON:0009663!2.13e-17!7;UBERON:0002021!9.38e-16!5;UBERON:0004121!1.83e-15!169;UBERON:0005383!2.31e-15!3;UBERON:0005382!2.31e-15!3;UBERON:0000924!5.74e-15!173;UBERON:0006601!5.74e-15!173;UBERON:0002771!5.75e-15!3;UBERON:0001871!1.13e-14!7;UBERON:0002308!1.79e-13!9;UBERON:0000125!1.79e-13!9;UBERON:0001870!3.64e-11!2;UBERON:0001873!1.06e-10!2;UBERON:0010122!1.06e-10!2;UBERON:0002360!6.70e-10!2;UBERON:0000094!6.70e-10!2;UBERON:0007645!6.70e-10!2;UBERON:0000025!1.12e-09!194;UBERON:0000349!2.73e-09!5;UBERON:0001872!3.14e-09!5;UBERON:0000064!5.51e-08!219;UBERON:0004111!9.61e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002022;2.39e-66;1!UBERON:0002021;1.60e-14;5!UBERON:0001950;1.09e-13;20!UBERON:0002619;1.33e-12;22!UBERON:0003688;2.45e-12;6!UBERON:0002358;2.45e-12;6!UBERON:0003684;2.45e-12;6!UBERON:0001178;2.45e-12;6!UBERON:0000956;2.77e-11;25!UBERON:0000203;2.77e-11;25!UBERON:0004457;1.12e-08;9!UBERON:0000042;1.12e-08;9!UBERON:0002791;1.25e-08;32!UBERON:0001869;1.25e-08;32!UBERON:0001893;5.60e-08;34!UBERON:0002780;9.94e-08;41!UBERON:0001890;9.94e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,2.39e-66,1;UBERON:0002021,1.40e-14,5;UBERON:0001950,1.02e-13,20;UBERON:0002619,1.25e-12,22;UBERON:0003688,2.74e-12,6;UBERON:0002358,2.74e-12,6;UBERON:0003684,2.74e-12,6;UBERON:0001178,2.74e-12,6;UBERON:0000956,2.63e-11,25;UBERON:0000203,2.63e-11,25;UBERON:0002791,3.79e-09,32;UBERON:0001869,3.79e-09,32;UBERON:0003528,1.09e-08,34;UBERON:0002020,1.09e-08,34;UBERON:0001893,1.09e-08,34;UBERON:0002780,2.04e-07,41;UBERON:0001890,2.04e-07,41;UBERON:0003080,2.04e-07,41;UBERON:0006240,2.04e-07,41;UBERON:0004457,8.38e-07,12;UBERON:0000042,8.38e-07,12 | |||
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|short_description=p43@PHACTR1 | |||
}} |
Revision as of 17:50, 13 September 2013
Short description: | p43@PHACTR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_43_at_PHACTR1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 12bp_to_ENST00000379348, uc003nai.2_5end |
EntrezGene: | PHACTR1 |
HGNC: | 20990 |
UniProt: | Q5R356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 4.09e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
insula | 2.39e-66 | 1 |
occipital lobe | 1.40e-14 | 5 |
neocortex | 1.02e-13 | 20 |
regional part of cerebral cortex | 1.25e-12 | 22 |
omentum | 2.74e-12 | 6 |
peritoneum | 2.74e-12 | 6 |
abdominal cavity | 2.74e-12 | 6 |
visceral peritoneum | 2.74e-12 | 6 |
cerebral cortex | 2.63e-11 | 25 |
pallium | 2.63e-11 | 25 |
regional part of telencephalon | 3.79e-09 | 32 |
cerebral hemisphere | 3.79e-09 | 32 |
brain grey matter | 1.09e-08 | 34 |
gray matter | 1.09e-08 | 34 |
telencephalon | 1.09e-08 | 34 |
regional part of forebrain | 2.04e-07 | 41 |
forebrain | 2.04e-07 | 41 |
anterior neural tube | 2.04e-07 | 41 |
future forebrain | 2.04e-07 | 41 |
cavity lining | 8.38e-07 | 12 |
serous membrane | 8.38e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.